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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CEBPZOS is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
53.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
50.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
50.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
48.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
43.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
43.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
42.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
41.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
40.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
40.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
39.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
38.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
38.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
38.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
37.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
37.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
37.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
37.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
36.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
36.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
36.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
35.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
35.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
34.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
34.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
33.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
33.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
33.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
33.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
33.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
33.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
32.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
32.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
32.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
31.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
31.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
31.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
30.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
30.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
30.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
29.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
29.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
29.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
29.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
29.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
28.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
28.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
28.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
28.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
28.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
28.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
27.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
27.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
27.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
27.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
27.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
27.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
26.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
26.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
26.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
26.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
26.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
26.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
26.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
26.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
26.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
26.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
26.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
25.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
25.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
25.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
25.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
25.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
25.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
25.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
25.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
25.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
25.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
25.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
25.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
25.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
24.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
24.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
24.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
24.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
24.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
24.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
24.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
24.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
23.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
23.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
23.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
23.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
23.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
23.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
23.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
23.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
23.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
23.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
22.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
22.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
22.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
22.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
22.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
22.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
22.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
22.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
22.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
22.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
22.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
21.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
21.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
21.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
21.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
21.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
21.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
21.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
21.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
21.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
21.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
21.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
21.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
20.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
20.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
20.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
20.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
20.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
20.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
20.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
20.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
20.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
20.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
20.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
19.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
19.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
19.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
19.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
19.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
19.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
19.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
19.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
19.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
19.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
19.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
19.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
19.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
19.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
19.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
19.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
19.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
19.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
19.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
19.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
18.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
18.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
18.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
18.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
18.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
18.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
18.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
18.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
18.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
18.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
18.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
18.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
18.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
18.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
17.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
17.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
17.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
17.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
17.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
17.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
17.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
17.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
17.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
17.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
17.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
17.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
17.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
16.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
16.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
16.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
16.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
16.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
16.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
16.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
16.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
16.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
16.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
16.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
16.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
16.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
16.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
16.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
16.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
16.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
16.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
16.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
16.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
16.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
16.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
16.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
15.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
15.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
15.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
15.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
15.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
15.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
15.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
15.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
14.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
14.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
14.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
14.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
14.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
14.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
14.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
14.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
14.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
14.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
13.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
13.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
13.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
13.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
13.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
13.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
13.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
13.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
13.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
12.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
12.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
12.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
12.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
12.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
12.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
12.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
11.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
11.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
11.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
11.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
10.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
10.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
1.2
745
Tumor
1.2
517
Tumor
1.2
785
Tumor
1.2
537
Tumor
1.2
925
Tumor
1.1
627
Tumor
1.1
665
Tumor
1.1
671
Tumor
1.1
967
Tumor
1.0
571
Tumor
1.0
341
Tumor
0.9
755
Tumor
0.9
615
Tumor
0.9
443
Tumor
0.8
513
Tumor
0.8
567
Tumor
0.8
477
Tumor
0.7
257
Tumor
0.7
171
Tumor
0.7
1021
Tumor
0.7
514
Normal
0.7
1045
Tumor
0.7
922
Normal
0.6
965
Tumor
0.6
553
Tumor
0.6
937
Tumor
0.6
951
Tumor
0.6
351
Tumor
0.6
473
Tumor
0.6
953
Tumor
0.5
127
Tumor
0.5
483
Tumor
0.5
231
Tumor
0.5
647
Tumor
0.5
727
Tumor
0.5
873
Tumor
0.5
491
Tumor
0.5
535
Tumor
0.5
112
Tumor
0.5
1015
Tumor
0.5
557
Tumor
0.5
915
Tumor
0.5
1041
Tumor
0.5
695
Tumor
0.5
135
Tumor
0.5
685
Tumor
0.5
487
Tumor
0.5
1025
Tumor
0.4
981
Tumor
0.4
353
Tumor
0.4
533
Tumor
0.4
515
Tumor
0.4
421
Tumor
0.4
1043
Tumor
0.4
921
Tumor
0.4
494
Normal
0.4
867
Tumor
0.4
393
Tumor
0.4
641
Tumor
0.4
661
Tumor
0.4
1014
Normal
0.4
743
Tumor
0.4
863
Tumor
0.4
395
Tumor
0.4
957
Tumor
0.4
554
Normal
0.3
724
Normal
0.3
363
Tumor
0.3
534
Normal
0.3
697
Tumor
0.3
857
Tumor
0.3
722
Normal
0.3
481
Tumor
0.3
527
Tumor
0.3
488
Normal
0.3
823
Tumor
0.2
883
Tumor
0.2
713
Tumor
0.2
911
Tumor
0.2
125
Tumor
0.2
232
Normal
0.2
573
Tumor
0.2
526
Normal
0.2
944
Normal
0.2
145
Tumor
0.2
1028
Normal
0.2
524
Normal
0.2
984
Normal
0.2
982
Normal
0.2
433
Tumor
0.2
963
Tumor
0.2
546
Normal
0.2
777
Tumor
0.2
923
Tumor
0.2
714
Normal
0.2
913
Tumor
0.2
916
Normal
0.2
147
Tumor
0.2
518
Normal
0.2
396
Normal
0.2
975
Tumor
0.2
425
Tumor
0.2
525
Tumor
0.2
471
Tumor
0.2
642
Normal
0.1
394
Normal
0.1
465
Tumor
0.1
877
Tumor
0.1
744
Normal
0.1
563
Tumor
0.1
227
Tumor
0.1
918
Normal
0.1
538
Normal
0.1
191
Tumor
0.1
864
Normal
0.1
616
Normal
0.1
721
Tumor
0.1
484
Normal
0.1
756
Normal
0.1
558
Normal
0.1
1031
Tumor
0.1
516
Normal
0.1
926
Normal
0.1
715
Tumor
0.1
123
Tumor
0.1
195
Tumor
0.1
213
Tumor
0.1
448
Normal
0.1
964
Normal
0.1
1026
Normal
0.1
285
Tumor
0.1
572
Normal
0.1
636
Normal
0.1
492
Normal
0.1
778
Normal
0.1
983
Tumor
0.1
938
Normal
0.1
737
Tumor
0.1
1042
Normal
0.1
415
Tumor
0.0
955
Tumor
0.0
1013
Tumor
0.0
868
Normal
0.0
411
Tumor
0.0
686
Normal
0.0
528
Normal
0.0
564
Normal
0.0
786
Normal
0.0
271
Tumor
0.0
545
Tumor
0.0
131
Tumor
0.0
388
Normal
0.0
386
Normal
0.0
815
Tumor
0.0
474
Normal
0.0
261
Tumor
0.0
648
Normal
0.0
478
Normal
0.0
696
Normal
0.0
628
Normal
0.0
313
Tumor
0.0
461
Tumor
0.0
427
Tumor
0.0
435
Tumor
0.0
861
Tumor
0.0
862
Normal
0.0
568
Normal
0.0
214
Normal
0.0
746
Normal
0.0
977
Tumor
0.0
618
Normal
0.0
1032
Normal
0.0
852
Normal
0.0
574
Normal
0.0
455
Tumor
0.0
816
Normal
0.0
297
Tumor
0.0
924
Normal
-0.1
172
Normal
-0.1
452
Normal
-0.1
493
Tumor
-0.1
447
Tumor
-0.1
278
Normal
-0.1
818
Normal
-0.1
423
Tumor
-0.1
1022
Normal
-0.1
952
Normal
-0.1
617
Tumor
-0.1
128
Normal
-0.1
917
Tumor
-0.1
462
Normal
-0.1
356
Normal
-0.1
968
Normal
-0.1
943
Tumor
-0.1
741
Tumor
-0.1
1044
Normal
-0.1
698
Normal
-0.1
716
Normal
-0.1
141
Tumor
-0.1
162
Normal
-0.1
866
Normal
-0.1
142
Normal
-0.1
1016
Normal
-0.1
132
Normal
-0.1
1046
Normal
-0.1
954
Normal
-0.1
355
Tumor
-0.1
666
Normal
-0.1
851
Tumor
-0.1
148
Normal
-0.1
672
Normal
-0.1
472
Normal
-0.1
352
Normal
-0.1
267
Tumor
-0.1
523
Tumor
-0.1
728
Normal
-0.1
185
Tumor
-0.1
431
Tumor
-0.1
412
Normal
-0.1
426
Normal
-0.1
912
Normal
-0.1
468
Normal
-0.1
146
Normal
-0.1
723
Tumor
-0.1
976
Normal
-0.2
328
Normal
-0.2
742
Normal
-0.2
482
Normal
-0.2
137
Tumor
-0.2
422
Normal
-0.2
364
Normal
-0.2
956
Normal
-0.2
874
Normal
-0.2
463
Tumor
-0.2
978
Normal
-0.2
738
Normal
-0.2
392
Normal
-0.2
451
Tumor
-0.2
258
Normal
-0.2
113
Tumor
-0.2
456
Normal
-0.2
813
Tumor
-0.2
466
Normal
-0.2
424
Normal
-0.2
445
Tumor
-0.2
882
Normal
-0.2
824
Normal
-0.2
664
Normal
-0.2
385
Tumor
-0.2
498
Normal
-0.2
414
Normal
-0.2
136
Normal
-0.2
497
Tumor
-0.2
436
Normal
-0.2
327
Tumor
-0.2
186
Normal
-0.2
358
Normal
-0.2
662
Normal
-0.2
387
Tumor
-0.2
218
Normal
-0.2
187
Tumor
-0.2
262
Normal
-0.2
188
Normal
-0.2
138
Normal
-0.3
428
Normal
-0.3
416
Normal
-0.3
858
Normal
-0.3
268
Normal
-0.3
958
Normal
-0.3
286
Normal
-0.3
884
Normal
-0.3
223
Tumor
-0.3
212
Normal
-0.3
332
Normal
-0.3
865
Tumor
-0.3
272
Normal
-0.3
221
Tumor
-0.3
114
Normal
-0.3
224
Normal
-0.3
354
Normal
-0.3
966
Normal
-0.3
464
Normal
-0.3
111
Normal
-0.3
124
Normal
-0.3
284
Normal
-0.3
432
Normal
-0.3
914
Normal
-0.3
413
Tumor
-0.3
196
Normal
-0.3
635
Tumor
-0.3
161
Tumor
-0.3
878
Normal
-0.4
446
Normal
-0.4
536
Normal
-0.4
283
Tumor
-0.4
228
Normal
-0.4
217
Tumor
-0.4
126
Normal
-0.4
277
Tumor
-0.4
391
Tumor
-0.4
434
Normal
-0.4
344
Normal
-0.5
467
Tumor
-0.5
222
Normal
-0.5
357
Tumor
-0.5
814
Normal
-0.5
663
Tumor
-0.5
314
Normal
-0.5
298
Normal
-0.6
312
Normal
-0.6
342
Normal
-0.6
444
Normal
-0.6
192
Normal
-0.6
343
Tumor
-0.6
817
Tumor
-0.7
881
Tumor
-0.7
311
Tumor
-0.8
211
Tumor
-0.9
331
Tumor
-0.9
361
Tumor
N/A
362
Normal
N/A
365
Tumor
N/A
366
Normal
N/A
367
Tumor
N/A
368
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
383
Tumor
N/A
384
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.