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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IFI30 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
230.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
1351.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1350.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
1214.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1179.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1057.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
960.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
915.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
912.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
857.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
843.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
825.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
819.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
801.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
786.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
753.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
748.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
655.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
611.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
594.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
591.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
582.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
579.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
572.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
554.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
541.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
534.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
533.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
521.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
514.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
502.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
492.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
483.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
478.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
471.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
469.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
462.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
462.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
457.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
450.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
449.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
444.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
429.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
427.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
422.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
409.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
407.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
399.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
395.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
391.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
389.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
387.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
383.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
381.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
378.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
374.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
347.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
342.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
342.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
337.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
337.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
333.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
333.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
331.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
330.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
323.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
323.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
322.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
321.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
317.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
317.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
314.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
313.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
311.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
311.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
311.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
304.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
303.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
302.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
298.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
296.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
295.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
295.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
295.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
290.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
288.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
288.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
288.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
286.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
285.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
285.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
283.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
283.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
281.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
281.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
278.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
278.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
274.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
270.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
270.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
270.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
269.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
267.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
265.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
264.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
264.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
263.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
263.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
261.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
256.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
255.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
251.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
250.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
249.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
244.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
242.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
241.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
241.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
240.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
240.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
239.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
237.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
235.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
233.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
233.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
232.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
231.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
230.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
228.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
226.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
225.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
222.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
221.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
218.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
216.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
216.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
214.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
214.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
213.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
213.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
210.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
209.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
207.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
207.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
206.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
205.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
205.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
204.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
204.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
203.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
201.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
200.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
199.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
198.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
198.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
198.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
198.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
194.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
193.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
193.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
193.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
193.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
191.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
187.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
186.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
186.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
185.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
185.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
182.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
181.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
180.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
180.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
179.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
178.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
176.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
175.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
174.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
173.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
170.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
170.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
169.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
169.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
169.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
169.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
169.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
169.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
167.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
166.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
166.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
166.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
163.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
160.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
160.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
159.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
157.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
156.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
156.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
155.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
155.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
155.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
154.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
154.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
153.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
153.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
152.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
152.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
150.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
149.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
148.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
148.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
148.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
147.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
146.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
145.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
145.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
143.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
143.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
142.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
141.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
140.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
140.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
139.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
139.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
138.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
138.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
138.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
137.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
137.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
136.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
134.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
134.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
134.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
133.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
133.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
133.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
130.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
129.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
128.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
128.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
126.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
126.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
125.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
124.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
124.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
123.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
123.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
123.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
120.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
118.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
116.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
116.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
115.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
115.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
114.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
112.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
111.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
110.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
110.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
109.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
109.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
109.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
108.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
107.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
105.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
105.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
104.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
104.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
103.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
103.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
103.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
102.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
102.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
100.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
99.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
98.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
97.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
97.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
96.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
95.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
93.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
92.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
92.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
91.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
91.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
91.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
90.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
87.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
87.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
86.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
86.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
86.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
86.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
84.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
84.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
83.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
83.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
83.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
83.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
83.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
81.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
81.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
81.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
80.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
80.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
80.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
79.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
79.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
77.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
75.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
74.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
73.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
73.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
72.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
71.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
71.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
71.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
69.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
69.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
68.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
67.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
66.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
66.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
66.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
65.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
64.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
64.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
63.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
63.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
63.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
62.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
62.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
61.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
61.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
60.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
60.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
60.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
59.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
58.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
58.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
58.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
56.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
56.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
56.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
55.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
54.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
52.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
52.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
49.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
49.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
49.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
48.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
48.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
47.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
43.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
43.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
42.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
42.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
41.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
41.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
40.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
30.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
30.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IFI30 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
221.6
Number of samples
231
Samples
Sample
Description
TPM
DO48747
0 years, male, NA, stage:3, alive, 540 days
1363.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1297.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
1254.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
1201.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
1087.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
982.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
922.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
792.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
746.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
743.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
705.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
691.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
668.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
666.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
638.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
588.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
571.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
554.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
546.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
536.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
535.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
480.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
475.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
449.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
448.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
424.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
418.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
406.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
406.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
387.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
384.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
383.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
375.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
370.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
369.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
366.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
357.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
356.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
350.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
336.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
329.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
323.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
323.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
313.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
305.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
301.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
292.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
291.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
285.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
277.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
275.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
275.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
270.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
267.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
267.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
263.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
263.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
256.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
251.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
250.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
250.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
248.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
244.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
243.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
242.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
237.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
235.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
230.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
229.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
228.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
226.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
222.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
220.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
220.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
219.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
217.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
217.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
216.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
213.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
211.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
209.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
209.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
207.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
207.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
204.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
203.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
200.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
198.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
196.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
196.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
195.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
192.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
189.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
188.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
185.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
181.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
181.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
180.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
179.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
177.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
177.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
176.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
175.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
174.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
173.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
173.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
169.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
166.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
164.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
163.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
162.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
161.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
159.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
159.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
159.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
157.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
156.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
156.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
153.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
152.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
150.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
147.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
147.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
145.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
145.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
145.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
144.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
143.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
141.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
140.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
135.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
132.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
130.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
129.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
129.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
129.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
129.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
127.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
126.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
125.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
124.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
121.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
120.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
119.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
116.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
116.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
113.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
110.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
110.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
109.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
109.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
108.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
107.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
104.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
104.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
104.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
103.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
102.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
101.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
100.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
98.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
98.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
94.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
93.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
93.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
93.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
91.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
87.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
84.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
84.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
83.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
82.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
81.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
81.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
80.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
76.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
74.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
71.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
70.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
70.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
68.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
68.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
68.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
67.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
67.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
66.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
65.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
65.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
64.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
63.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
63.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
63.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
62.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
61.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
57.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
56.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
56.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
55.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
54.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
54.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
53.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
53.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
50.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
49.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
49.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
48.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
48.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
48.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
48.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
46.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
44.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
44.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
44.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
43.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
42.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
41.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
41.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
41.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
38.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
37.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
36.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
34.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
34.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
31.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
31.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
26.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
24.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
24.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
19.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
18.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
17.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
125
Tumor
1.5
231
Tumor
1.2
395
Tumor
1.2
313
Tumor
1.1
451
Tumor
1.1
851
Tumor
1.0
661
Tumor
1.0
525
Tumor
1.0
557
Tumor
0.9
311
Tumor
0.8
343
Tumor
0.8
697
Tumor
0.7
124
Normal
0.6
434
Normal
0.6
211
Tumor
0.6
537
Tumor
0.6
385
Tumor
0.6
375
Tumor
0.6
713
Tumor
0.6
571
Tumor
0.5
1027
Tumor
0.5
147
Tumor
0.5
283
Tumor
0.4
563
Tumor
0.4
257
Tumor
0.4
817
Tumor
0.4
463
Tumor
0.4
161
Tumor
0.4
387
Tumor
0.4
923
Tumor
0.4
141
Tumor
0.3
443
Tumor
0.3
113
Tumor
0.3
641
Tumor
0.3
137
Tumor
0.3
267
Tumor
0.3
421
Tumor
0.3
467
Tumor
0.3
491
Tumor
0.3
262
Normal
0.3
383
Tumor
0.3
492
Normal
0.3
297
Tumor
0.2
573
Tumor
0.2
883
Tumor
0.2
223
Tumor
0.2
123
Tumor
0.2
217
Tumor
0.2
145
Tumor
0.2
221
Tumor
0.2
195
Tumor
0.2
813
Tumor
0.2
188
Normal
0.2
391
Tumor
0.2
953
Tumor
0.2
362
Normal
0.1
366
Normal
0.1
471
Tumor
0.1
344
Normal
0.1
538
Normal
0.1
966
Normal
0.1
393
Tumor
0.1
663
Tumor
0.1
213
Tumor
0.1
715
Tumor
0.1
461
Tumor
0.1
983
Tumor
0.1
545
Tumor
0.1
357
Tumor
0.1
331
Tumor
0.1
1015
Tumor
0.1
917
Tumor
0.1
535
Tumor
0.1
861
Tumor
0.1
361
Tumor
0.0
218
Normal
0.0
951
Tumor
0.0
452
Normal
0.0
365
Tumor
0.0
268
Normal
0.0
823
Tumor
0.0
396
Normal
0.0
388
Normal
0.0
455
Tumor
0.0
952
Normal
0.0
386
Normal
0.0
185
Tumor
0.0
727
Tumor
0.0
567
Tumor
0.0
394
Normal
0.0
258
Normal
0.0
914
Normal
0.0
724
Normal
0.0
171
Tumor
0.0
126
Normal
0.0
114
Normal
0.0
224
Normal
0.0
272
Normal
0.0
363
Tumor
0.0
138
Normal
-0.1
392
Normal
-0.1
172
Normal
-0.1
368
Normal
-0.1
427
Tumor
-0.1
332
Normal
-0.1
355
Tumor
-0.1
286
Normal
-0.1
312
Normal
-0.1
432
Normal
-0.1
468
Normal
-0.1
493
Tumor
-0.1
671
Tumor
-0.1
187
Tumor
-0.1
112
Tumor
-0.2
384
Normal
-0.2
553
Tumor
-0.2
111
Normal
-0.2
464
Normal
-0.2
473
Tumor
-0.2
943
Tumor
-0.2
857
Tumor
-0.2
913
Tumor
-0.2
277
Tumor
-0.2
162
Normal
-0.2
554
Normal
-0.2
353
Tumor
-0.2
212
Normal
-0.2
662
Normal
-0.2
911
Tumor
-0.2
148
Normal
-0.2
271
Tumor
-0.2
755
Tumor
-0.2
955
Tumor
-0.2
261
Tumor
-0.2
232
Normal
-0.2
136
Normal
-0.2
686
Normal
-0.2
447
Tumor
-0.2
814
Normal
-0.2
186
Normal
-0.2
278
Normal
-0.2
285
Tumor
-0.2
1028
Normal
-0.2
881
Tumor
-0.3
466
Normal
-0.3
191
Tumor
-0.3
915
Tumor
-0.3
376
Normal
-0.3
1016
Normal
-0.3
523
Tumor
-0.3
192
Normal
-0.3
526
Normal
-0.3
474
Normal
-0.3
533
Tumor
-0.3
446
Normal
-0.3
685
Tumor
-0.3
456
Normal
-0.3
146
Normal
-0.3
574
Normal
-0.3
721
Tumor
-0.3
298
Normal
-0.3
135
Tumor
-0.3
536
Normal
-0.3
132
Normal
-0.3
984
Normal
-0.3
937
Tumor
-0.3
222
Normal
-0.3
635
Tumor
-0.3
524
Normal
-0.3
967
Tumor
-0.3
284
Normal
-0.3
342
Normal
-0.3
228
Normal
-0.3
433
Tumor
-0.3
356
Normal
-0.3
916
Normal
-0.3
858
Normal
-0.3
196
Normal
-0.3
816
Normal
-0.3
414
Normal
-0.4
327
Tumor
-0.4
314
Normal
-0.4
925
Tumor
-0.4
423
Tumor
-0.4
128
Normal
-0.4
627
Tumor
-0.4
516
Normal
-0.4
413
Tumor
-0.4
868
Normal
-0.4
963
Tumor
-0.4
965
Tumor
-0.4
728
Normal
-0.4
422
Normal
-0.4
568
Normal
-0.4
428
Normal
-0.4
214
Normal
-0.4
367
Tumor
-0.4
127
Tumor
-0.4
956
Normal
-0.4
518
Normal
-0.4
142
Normal
-0.4
444
Normal
-0.4
618
Normal
-0.4
738
Normal
-0.4
867
Tumor
-0.4
824
Normal
-0.4
436
Normal
-0.4
227
Tumor
-0.4
358
Normal
-0.5
416
Normal
-0.5
778
Normal
-0.5
487
Tumor
-0.5
818
Normal
-0.5
968
Normal
-0.5
354
Normal
-0.5
716
Normal
-0.5
352
Normal
-0.5
617
Tumor
-0.5
1014
Normal
-0.5
975
Tumor
-0.5
874
Normal
-0.5
472
Normal
-0.5
465
Tumor
-0.5
884
Normal
-0.5
483
Tumor
-0.5
424
Normal
-0.5
482
Normal
-0.5
944
Normal
-0.5
528
Normal
-0.5
478
Normal
-0.5
564
Normal
-0.5
642
Normal
-0.5
558
Normal
-0.5
514
Normal
-0.5
978
Normal
-0.5
411
Tumor
-0.5
497
Tumor
-0.5
426
Normal
-0.5
744
Normal
-0.5
636
Normal
-0.5
546
Normal
-0.5
351
Tumor
-0.5
957
Tumor
-0.5
1025
Tumor
-0.6
954
Normal
-0.6
462
Normal
-0.6
328
Normal
-0.6
714
Normal
-0.6
852
Normal
-0.6
445
Tumor
-0.6
415
Tumor
-0.6
494
Normal
-0.6
865
Tumor
-0.6
1021
Tumor
-0.6
878
Normal
-0.6
664
Normal
-0.6
1043
Tumor
-0.6
976
Normal
-0.6
696
Normal
-0.6
341
Tumor
-0.6
1041
Tumor
-0.6
364
Normal
-0.6
534
Normal
-0.6
515
Tumor
-0.6
1045
Tumor
-0.7
572
Normal
-0.7
1031
Tumor
-0.7
926
Normal
-0.7
866
Normal
-0.7
648
Normal
-0.7
698
Normal
-0.7
742
Normal
-0.7
964
Normal
-0.7
862
Normal
-0.7
498
Normal
-0.7
722
Normal
-0.7
877
Tumor
-0.7
1026
Normal
-0.7
435
Tumor
-0.7
412
Normal
-0.7
912
Normal
-0.7
864
Normal
-0.7
938
Normal
-0.7
981
Tumor
-0.7
746
Normal
-0.7
477
Tumor
-0.7
488
Normal
-0.7
484
Normal
-0.8
882
Normal
-0.8
815
Tumor
-0.8
873
Tumor
-0.8
628
Normal
-0.8
666
Normal
-0.8
982
Normal
-0.8
527
Tumor
-0.8
672
Normal
-0.8
924
Normal
-0.8
723
Tumor
-0.8
647
Tumor
-0.8
1013
Tumor
-0.8
615
Tumor
-0.8
922
Normal
-0.9
431
Tumor
-0.9
513
Tumor
-0.9
665
Tumor
-0.9
918
Normal
-0.9
1042
Normal
-0.9
616
Normal
-0.9
1044
Normal
-0.9
921
Tumor
-0.9
958
Normal
-0.9
481
Tumor
-0.9
1046
Normal
-0.9
517
Tumor
-1.0
786
Normal
-1.0
448
Normal
-1.0
863
Tumor
-1.0
1032
Normal
-1.0
695
Tumor
-1.0
745
Tumor
-1.0
756
Normal
-1.1
1022
Normal
-1.1
743
Tumor
-1.1
785
Tumor
-1.2
737
Tumor
-1.2
425
Tumor
-1.2
777
Tumor
-1.3
977
Tumor
-1.3
131
Tumor
-1.5
741
Tumor
-1.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.