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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HNRNPUL2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
51.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
48.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
47.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
43.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
40.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
39.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
38.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
38.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
38.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
37.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
35.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
34.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
33.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
33.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
32.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
32.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
30.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
30.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
30.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
30.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
30.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
30.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
29.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
29.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
29.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
28.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
28.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
27.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
27.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
27.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
27.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
25.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
25.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
25.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
25.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
24.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
24.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
24.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
23.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
23.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
23.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
23.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
23.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
23.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
22.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
22.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
22.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
22.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
22.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
22.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
21.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
21.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
21.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
21.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
21.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
21.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
21.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
20.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
20.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
20.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
20.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
20.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
20.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
20.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
20.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
20.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
20.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
20.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
19.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
19.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
19.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
19.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
19.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
19.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
19.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
19.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
19.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
19.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
18.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
18.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
18.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
18.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
18.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
18.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
18.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
18.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
18.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
18.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
18.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
18.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
18.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
18.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
18.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
18.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
18.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
17.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
17.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
17.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
17.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
17.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
17.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
17.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
17.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
17.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
17.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
17.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
17.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
17.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
17.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
16.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
16.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
16.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
16.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
16.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
16.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
16.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
16.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
16.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
16.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
16.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
16.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
16.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
16.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
16.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
16.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
16.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
15.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
15.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
15.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
15.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
15.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
15.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
15.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
15.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
15.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
15.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
15.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
15.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
15.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
15.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
15.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
15.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
15.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
15.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
15.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
15.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
15.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
15.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
15.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
15.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
15.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
14.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
14.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
14.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
14.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
14.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
14.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
14.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
13.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
13.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
13.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
13.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
13.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
13.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
13.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
13.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
13.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
13.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
12.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
12.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
12.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
12.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
12.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
12.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
12.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
11.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
11.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
11.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
10.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
10.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
10.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
9.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
7.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HNRNPUL2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.3
Number of samples
231
Samples
Sample
Description
TPM
DO45289
0 years, female, NA, stage:3, alive, 360 days
49.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
47.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
46.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
46.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
40.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
40.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
40.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
39.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
39.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
39.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
38.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
37.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
37.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
36.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
36.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
36.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
35.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
35.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
35.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
35.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
35.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
35.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
34.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
34.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
33.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
33.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
33.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
33.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
32.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
32.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
32.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
31.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
30.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
30.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
30.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
30.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
30.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
30.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
30.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
29.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
28.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
28.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
28.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
28.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
28.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
28.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
28.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
28.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
28.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
27.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
27.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
27.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
27.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
27.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
27.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
27.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
26.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
26.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
26.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
26.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
26.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
25.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
25.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
25.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
25.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
25.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
25.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
25.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
25.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
25.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
24.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
24.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
24.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
24.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
24.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
23.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
23.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
23.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
23.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
23.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
23.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
23.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
23.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
22.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
22.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
22.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
22.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
22.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
22.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
22.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
22.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
22.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
22.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
22.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
22.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
22.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
22.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
22.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
22.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
22.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
21.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
21.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
21.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
21.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
21.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
21.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
21.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
21.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
21.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
21.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
21.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
21.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
20.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
20.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
20.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
20.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
20.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
20.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
20.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
20.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
20.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
20.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
20.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
20.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
20.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
20.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
20.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
20.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
20.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
20.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
20.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
20.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
19.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
19.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
19.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
19.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
19.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
19.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
19.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
19.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
19.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
18.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
18.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
18.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
18.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
18.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
18.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
18.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
18.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
18.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
18.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
18.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
18.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
18.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
18.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
17.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
17.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
17.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
17.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
17.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
17.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
17.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
17.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
17.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
17.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
17.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
17.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
17.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
17.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
17.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
17.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
16.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
16.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
16.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
16.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
16.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
16.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
16.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
16.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
16.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
16.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
15.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
15.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
15.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
15.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
15.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
15.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
15.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
15.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
15.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
14.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
14.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
14.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
13.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
11.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
813
Tumor
1.3
814
Normal
1.0
211
Tumor
0.9
883
Tumor
0.9
815
Tumor
0.8
425
Tumor
0.7
917
Tumor
0.7
487
Tumor
0.7
161
Tumor
0.6
921
Tumor
0.6
977
Tumor
0.6
925
Tumor
0.6
331
Tumor
0.5
477
Tumor
0.5
727
Tumor
0.5
497
Tumor
0.5
1027
Tumor
0.5
1031
Tumor
0.5
923
Tumor
0.5
447
Tumor
0.5
491
Tumor
0.5
975
Tumor
0.5
483
Tumor
0.5
527
Tumor
0.5
737
Tumor
0.5
455
Tumor
0.4
387
Tumor
0.4
355
Tumor
0.4
685
Tumor
0.4
545
Tumor
0.4
817
Tumor
0.4
1025
Tumor
0.4
343
Tumor
0.4
313
Tumor
0.4
123
Tumor
0.4
285
Tumor
0.4
865
Tumor
0.4
185
Tumor
0.4
385
Tumor
0.4
1021
Tumor
0.4
431
Tumor
0.4
297
Tumor
0.4
553
Tumor
0.4
443
Tumor
0.3
427
Tumor
0.3
271
Tumor
0.3
963
Tumor
0.3
213
Tumor
0.3
533
Tumor
0.3
411
Tumor
0.3
881
Tumor
0.3
635
Tumor
0.3
311
Tumor
0.3
785
Tumor
0.3
525
Tumor
0.3
1015
Tumor
0.3
743
Tumor
0.3
171
Tumor
0.3
777
Tumor
0.3
471
Tumor
0.3
641
Tumor
0.3
1041
Tumor
0.3
421
Tumor
0.3
451
Tumor
0.3
341
Tumor
0.3
517
Tumor
0.3
515
Tumor
0.3
227
Tumor
0.3
413
Tumor
0.3
1013
Tumor
0.2
513
Tumor
0.2
217
Tumor
0.2
535
Tumor
0.2
478
Normal
0.2
467
Tumor
0.2
492
Normal
0.2
913
Tumor
0.2
823
Tumor
0.2
395
Tumor
0.2
863
Tumor
0.2
125
Tumor
0.2
563
Tumor
0.2
877
Tumor
0.2
221
Tumor
0.2
461
Tumor
0.2
131
Tumor
0.2
671
Tumor
0.2
911
Tumor
0.2
493
Tumor
0.2
661
Tumor
0.2
524
Normal
0.2
523
Tumor
0.2
375
Tumor
0.2
141
Tumor
0.2
951
Tumor
0.2
536
Normal
0.1
943
Tumor
0.1
665
Tumor
0.1
415
Tumor
0.1
283
Tumor
0.1
127
Tumor
0.1
916
Normal
0.1
383
Tumor
0.1
444
Normal
0.1
873
Tumor
0.1
615
Tumor
0.1
277
Tumor
0.1
498
Normal
0.1
721
Tumor
0.1
268
Normal
0.1
958
Normal
0.1
861
Tumor
0.1
192
Normal
0.1
713
Tumor
0.1
573
Tumor
0.1
137
Tumor
0.1
481
Tumor
0.0
715
Tumor
0.0
1045
Tumor
0.0
537
Tumor
0.0
695
Tumor
0.0
1043
Tumor
0.0
135
Tumor
0.0
978
Normal
0.0
434
Normal
0.0
957
Tumor
0.0
857
Tumor
0.0
195
Tumor
0.0
516
Normal
0.0
984
Normal
0.0
357
Tumor
0.0
954
Normal
0.0
112
Tumor
0.0
966
Normal
0.0
212
Normal
0.0
1014
Normal
0.0
981
Tumor
0.0
686
Normal
0.0
647
Tumor
0.0
188
Normal
0.0
697
Tumor
0.0
147
Tumor
0.0
423
Tumor
0.0
663
Tumor
0.0
976
Normal
0.0
964
Normal
0.0
851
Tumor
-0.1
224
Normal
-0.1
463
Tumor
-0.1
955
Tumor
-0.1
351
Tumor
-0.1
113
Tumor
-0.1
627
Tumor
-0.1
538
Normal
-0.1
433
Tumor
-0.1
922
Normal
-0.1
367
Tumor
-0.1
924
Normal
-0.1
755
Tumor
-0.1
327
Tumor
-0.1
557
Tumor
-0.1
867
Tumor
-0.1
1032
Normal
-0.1
488
Normal
-0.1
1028
Normal
-0.1
223
Tumor
-0.1
126
Normal
-0.1
435
Tumor
-0.1
284
Normal
-0.1
878
Normal
-0.1
412
Normal
-0.1
365
Tumor
-0.1
146
Normal
-0.1
384
Normal
-0.1
716
Normal
-0.1
472
Normal
-0.1
724
Normal
-0.1
261
Tumor
-0.2
386
Normal
-0.2
696
Normal
-0.2
968
Normal
-0.2
142
Normal
-0.2
187
Tumor
-0.2
938
Normal
-0.2
124
Normal
-0.2
312
Normal
-0.2
484
Normal
-0.2
474
Normal
-0.2
926
Normal
-0.2
448
Normal
-0.2
526
Normal
-0.2
262
Normal
-0.2
884
Normal
-0.2
356
Normal
-0.2
554
Normal
-0.2
558
Normal
-0.2
756
Normal
-0.2
944
Normal
-0.2
514
Normal
-0.2
874
Normal
-0.2
328
Normal
-0.2
915
Tumor
-0.2
445
Tumor
-0.2
494
Normal
-0.2
465
Tumor
-0.2
937
Tumor
-0.2
473
Tumor
-0.2
982
Normal
-0.2
786
Normal
-0.2
953
Tumor
-0.2
918
Normal
-0.2
138
Normal
-0.2
416
Normal
-0.2
364
Normal
-0.2
534
Normal
-0.2
1016
Normal
-0.2
1042
Normal
-0.2
778
Normal
-0.2
528
Normal
-0.2
362
Normal
-0.2
332
Normal
-0.2
363
Tumor
-0.2
546
Normal
-0.2
1046
Normal
-0.2
272
Normal
-0.2
1044
Normal
-0.2
852
Normal
-0.2
518
Normal
-0.2
672
Normal
-0.2
145
Tumor
-0.2
912
Normal
-0.2
956
Normal
-0.2
1022
Normal
-0.2
952
Normal
-0.2
314
Normal
-0.2
858
Normal
-0.2
278
Normal
-0.2
628
Normal
-0.2
662
Normal
-0.2
257
Tumor
-0.2
231
Tumor
-0.2
396
Normal
-0.2
172
Normal
-0.2
191
Tumor
-0.2
162
Normal
-0.2
344
Normal
-0.2
228
Normal
-0.2
352
Normal
-0.2
983
Tumor
-0.2
258
Normal
-0.2
965
Tumor
-0.2
391
Tumor
-0.2
914
Normal
-0.2
114
Normal
-0.3
368
Normal
-0.3
298
Normal
-0.3
714
Normal
-0.3
868
Normal
-0.3
882
Normal
-0.3
482
Normal
-0.3
353
Tumor
-0.3
394
Normal
-0.3
462
Normal
-0.3
698
Normal
-0.3
567
Tumor
-0.3
572
Normal
-0.3
392
Normal
-0.3
738
Normal
-0.3
744
Normal
-0.3
864
Normal
-0.3
824
Normal
-0.3
218
Normal
-0.3
616
Normal
-0.3
136
Normal
-0.3
388
Normal
-0.3
393
Tumor
-0.3
214
Normal
-0.3
424
Normal
-0.3
1026
Normal
-0.3
432
Normal
-0.3
361
Tumor
-0.3
722
Normal
-0.3
664
Normal
-0.3
816
Normal
-0.3
574
Normal
-0.3
414
Normal
-0.3
366
Normal
-0.3
468
Normal
-0.3
746
Normal
-0.3
636
Normal
-0.3
666
Normal
-0.3
967
Tumor
-0.3
866
Normal
-0.3
818
Normal
-0.3
452
Normal
-0.3
741
Tumor
-0.3
728
Normal
-0.3
426
Normal
-0.3
111
Normal
-0.3
132
Normal
-0.3
148
Normal
-0.3
376
Normal
-0.3
617
Tumor
-0.4
422
Normal
-0.4
186
Normal
-0.4
196
Normal
-0.4
466
Normal
-0.4
222
Normal
-0.4
232
Normal
-0.4
745
Tumor
-0.4
428
Normal
-0.4
456
Normal
-0.4
286
Normal
-0.4
648
Normal
-0.4
862
Normal
-0.4
464
Normal
-0.4
742
Normal
-0.4
342
Normal
-0.4
436
Normal
-0.4
723
Tumor
-0.4
128
Normal
-0.4
354
Normal
-0.4
568
Normal
-0.4
564
Normal
-0.4
642
Normal
-0.4
618
Normal
-0.4
446
Normal
-0.4
358
Normal
-0.4
267
Tumor
-0.5
571
Tumor
-0.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
