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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IFRD2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
47.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
199.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
148.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
145.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
138.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
135.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
134.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
119.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
104.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
97.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
96.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
93.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
93.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
91.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
89.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
86.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
86.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
84.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
82.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
81.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
80.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
79.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
78.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
76.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
76.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
76.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
75.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
75.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
74.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
74.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
74.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
73.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
72.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
72.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
72.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
72.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
71.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
71.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
70.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
70.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
70.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
70.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
70.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
70.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
69.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
67.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
67.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
66.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
66.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
66.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
66.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
65.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
65.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
65.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
65.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
65.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
65.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
64.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
64.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
64.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
64.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
64.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
64.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
64.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
64.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
63.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
63.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
63.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
62.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
62.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
62.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
62.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
62.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
61.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
61.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
61.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
60.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
60.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
60.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
59.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
59.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
59.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
59.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
59.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
59.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
58.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
58.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
58.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
58.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
57.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
57.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
57.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
57.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
57.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
57.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
56.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
56.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
56.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
56.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
56.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
56.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
56.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
55.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
55.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
55.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
55.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
55.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
55.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
54.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
54.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
53.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
53.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
53.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
53.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
53.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
53.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
53.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
53.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
52.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
52.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
52.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
52.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
52.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
52.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
51.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
51.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
51.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
51.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
51.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
51.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
51.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
51.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
50.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
50.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
49.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
49.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
49.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
49.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
48.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
48.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
48.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
48.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
48.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
48.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
48.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
47.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
47.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
47.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
47.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
47.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
47.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
47.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
47.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
46.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
46.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
46.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
46.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
46.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
46.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
46.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
45.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
45.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
45.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
45.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
45.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
45.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
45.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
45.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
44.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
44.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
44.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
44.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
43.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
43.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
43.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
43.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
43.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
42.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
42.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
42.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
42.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
42.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
42.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
42.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
42.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
42.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
42.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
41.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
41.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
41.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
41.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
41.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
41.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
41.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
41.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
41.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
41.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
40.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
40.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
40.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
40.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
40.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
40.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
40.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
40.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
39.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
39.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
39.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
39.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
39.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
39.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
39.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
38.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
38.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
38.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
38.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
38.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
38.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
38.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
38.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
37.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
37.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
37.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
37.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
37.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
37.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
37.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
37.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
37.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
36.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
36.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
36.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
36.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
36.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
36.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
36.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
36.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
36.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
36.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
36.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
35.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
35.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
35.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
35.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
35.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
35.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
35.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
35.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
35.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
35.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
35.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
34.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
34.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
34.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
34.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
34.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
34.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
34.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
34.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
33.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
33.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
33.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
33.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
33.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
33.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
33.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
33.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
33.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
32.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
32.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
32.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
32.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
32.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
32.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
32.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
32.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
32.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
31.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
31.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
31.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
31.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
31.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
31.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
31.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
31.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
30.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
30.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
30.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
30.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
30.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
30.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
29.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
29.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
29.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
29.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
29.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
29.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
29.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
28.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
28.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
28.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
28.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
28.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
28.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
28.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
28.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
27.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
27.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
27.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
27.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
27.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
27.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
27.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
26.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
26.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
26.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
26.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
26.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
26.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
26.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
26.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
26.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
25.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
25.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
25.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
25.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
25.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
24.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
24.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
23.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
23.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
23.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
23.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
23.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
22.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
22.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
21.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
21.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
21.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
21.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
21.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
21.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
21.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
20.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
19.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
19.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
19.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
19.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
19.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
19.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
18.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
18.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
16.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
15.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
15.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IFRD2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
27.9
Number of samples
231
Samples
Sample
Description
TPM
DO23540
0 years, male, NA, stage:1, alive, 750 days
97.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
92.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
85.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
63.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
61.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
60.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
60.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
60.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
59.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
58.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
55.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
53.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
53.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
53.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
51.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
50.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
48.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
47.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
47.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
47.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
46.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
46.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
45.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
44.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
44.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
43.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
42.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
41.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
40.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
40.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
40.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
39.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
38.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
38.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
38.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
38.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
38.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
38.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
37.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
37.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
36.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
36.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
36.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
36.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
35.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
35.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
35.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
34.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
34.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
34.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
34.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
34.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
33.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
33.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
33.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
33.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
33.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
33.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
32.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
32.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
32.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
32.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
31.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
31.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
31.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
31.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
31.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
31.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
31.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
30.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
30.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
30.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
30.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
30.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
29.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
29.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
29.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
29.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
29.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
29.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
29.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
28.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
28.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
28.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
28.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
28.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
27.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
27.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
27.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
27.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
27.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
27.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
27.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
27.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
27.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
26.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
26.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
26.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
26.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
26.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
26.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
26.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
26.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
26.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
26.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
26.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
26.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
26.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
26.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
26.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
26.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
25.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
25.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
25.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
25.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
25.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
25.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
25.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
24.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
24.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
24.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
24.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
24.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
24.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
24.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
24.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
24.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
24.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
23.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
23.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
23.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
23.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
23.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
23.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
23.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
23.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
23.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
23.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
23.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
23.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
23.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
23.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
23.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
23.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
22.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
22.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
22.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
22.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
22.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
22.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
22.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
22.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
21.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
21.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
21.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
21.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
21.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
21.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
21.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
21.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
21.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
21.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
20.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
20.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
20.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
20.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
20.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
20.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
20.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
19.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
19.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
19.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
18.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
18.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
18.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
18.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
18.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
18.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
18.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
18.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
18.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
17.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
17.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
16.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
16.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
16.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
16.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
16.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
16.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
16.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
16.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
15.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
15.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
14.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
14.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
14.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
127
Tumor
1.3
331
Tumor
0.9
128
Normal
0.9
393
Tumor
0.8
557
Tumor
0.7
813
Tumor
0.7
715
Tumor
0.7
567
Tumor
0.7
523
Tumor
0.6
395
Tumor
0.6
413
Tumor
0.6
1041
Tumor
0.6
615
Tumor
0.6
124
Normal
0.5
113
Tumor
0.5
851
Tumor
0.5
391
Tumor
0.5
171
Tumor
0.5
537
Tumor
0.4
112
Tumor
0.4
344
Normal
0.4
111
Normal
0.4
351
Tumor
0.4
517
Tumor
0.4
358
Normal
0.4
114
Normal
0.4
271
Tumor
0.4
741
Tumor
0.4
258
Normal
0.3
685
Tumor
0.3
126
Normal
0.3
387
Tumor
0.3
1021
Tumor
0.3
513
Tumor
0.3
426
Normal
0.3
385
Tumor
0.3
232
Normal
0.3
375
Tumor
0.3
573
Tumor
0.3
664
Normal
0.3
231
Tumor
0.3
815
Tumor
0.3
465
Tumor
0.3
383
Tumor
0.3
865
Tumor
0.3
671
Tumor
0.3
352
Normal
0.3
451
Tumor
0.3
123
Tumor
0.3
428
Normal
0.3
648
Normal
0.3
327
Tumor
0.3
187
Tumor
0.2
268
Normal
0.2
672
Normal
0.2
394
Normal
0.2
423
Tumor
0.2
814
Normal
0.2
525
Tumor
0.2
313
Tumor
0.2
278
Normal
0.2
388
Normal
0.2
462
Normal
0.2
196
Normal
0.2
172
Normal
0.2
392
Normal
0.2
737
Tumor
0.2
314
Normal
0.2
357
Tumor
0.2
665
Tumor
0.2
436
Normal
0.2
365
Tumor
0.2
131
Tumor
0.2
563
Tumor
0.2
914
Normal
0.2
272
Normal
0.2
297
Tumor
0.2
222
Normal
0.2
427
Tumor
0.2
467
Tumor
0.2
262
Normal
0.2
574
Normal
0.2
724
Normal
0.2
332
Normal
0.2
186
Normal
0.2
267
Tumor
0.2
666
Normal
0.2
534
Normal
0.2
533
Tumor
0.2
528
Normal
0.2
285
Tumor
0.2
214
Normal
0.1
464
Normal
0.1
432
Normal
0.1
298
Normal
0.1
422
Normal
0.1
446
Normal
0.1
356
Normal
0.1
695
Tumor
0.1
1046
Normal
0.1
553
Tumor
0.1
396
Normal
0.1
342
Normal
0.1
965
Tumor
0.1
218
Normal
0.1
354
Normal
0.1
424
Normal
0.1
518
Normal
0.1
148
Normal
0.1
568
Normal
0.1
786
Normal
0.1
564
Normal
0.1
136
Normal
0.1
662
Normal
0.1
1028
Normal
0.1
135
Tumor
0.1
477
Tumor
0.1
618
Normal
0.1
964
Normal
0.1
132
Normal
0.1
1027
Tumor
0.1
468
Normal
0.1
627
Tumor
0.0
745
Tumor
0.0
161
Tumor
0.0
535
Tumor
0.0
435
Tumor
0.0
466
Normal
0.0
414
Normal
0.0
546
Normal
0.0
977
Tumor
0.0
746
Normal
0.0
341
Tumor
0.0
162
Normal
0.0
663
Tumor
0.0
411
Tumor
0.0
862
Normal
0.0
353
Tumor
0.0
515
Tumor
0.0
386
Normal
0.0
361
Tumor
0.0
867
Tumor
0.0
866
Normal
0.0
984
Normal
0.0
852
Normal
0.0
312
Normal
0.0
472
Normal
0.0
445
Tumor
0.0
185
Tumor
0.0
882
Normal
0.0
261
Tumor
0.0
188
Normal
0.0
474
Normal
0.0
616
Normal
0.0
366
Normal
0.0
416
Normal
0.0
697
Tumor
0.0
742
Normal
0.0
425
Tumor
0.0
328
Normal
0.0
881
Tumor
0.0
362
Normal
0.0
421
Tumor
0.0
721
Tumor
0.0
554
Normal
0.0
146
Normal
0.0
824
Normal
0.0
536
Normal
0.0
286
Normal
0.0
455
Tumor
0.0
858
Normal
0.0
141
Tumor
0.0
877
Tumor
0.0
913
Tumor
-0.1
722
Normal
-0.1
1045
Tumor
-0.1
925
Tumor
-0.1
223
Tumor
-0.1
661
Tumor
-0.1
1016
Normal
-0.1
817
Tumor
-0.1
883
Tumor
-0.1
368
Normal
-0.1
756
Normal
-0.1
1043
Tumor
-0.1
384
Normal
-0.1
1022
Normal
-0.1
376
Normal
-0.1
461
Tumor
-0.1
145
Tumor
-0.1
217
Tumor
-0.1
944
Normal
-0.1
257
Tumor
-0.1
983
Tumor
-0.1
1013
Tumor
-0.1
434
Normal
-0.1
938
Normal
-0.1
227
Tumor
-0.1
816
Normal
-0.1
213
Tumor
-0.1
1026
Normal
-0.1
636
Normal
-0.1
526
Normal
-0.1
571
Tumor
-0.1
744
Normal
-0.1
911
Tumor
-0.1
482
Normal
-0.1
818
Normal
-0.1
868
Normal
-0.1
538
Normal
-0.1
572
Normal
-0.2
191
Tumor
-0.2
452
Normal
-0.2
527
Tumor
-0.2
723
Tumor
-0.2
444
Normal
-0.2
975
Tumor
-0.2
857
Tumor
-0.2
714
Normal
-0.2
956
Normal
-0.2
228
Normal
-0.2
642
Normal
-0.2
343
Tumor
-0.2
954
Normal
-0.2
138
Normal
-0.2
953
Tumor
-0.2
952
Normal
-0.2
516
Normal
-0.2
412
Normal
-0.2
955
Tumor
-0.2
884
Normal
-0.2
951
Tumor
-0.2
976
Normal
-0.2
221
Tumor
-0.2
524
Normal
-0.2
873
Tumor
-0.2
448
Normal
-0.2
978
Normal
-0.2
433
Tumor
-0.2
698
Normal
-0.2
912
Normal
-0.2
284
Normal
-0.2
982
Normal
-0.2
864
Normal
-0.2
364
Normal
-0.2
443
Tumor
-0.2
738
Normal
-0.2
456
Normal
-0.2
142
Normal
-0.2
447
Tumor
-0.2
874
Normal
-0.2
137
Tumor
-0.2
481
Tumor
-0.2
195
Tumor
-0.2
514
Normal
-0.2
1015
Tumor
-0.2
311
Tumor
-0.2
367
Tumor
-0.3
212
Normal
-0.3
471
Tumor
-0.3
696
Normal
-0.3
1025
Tumor
-0.3
743
Tumor
-0.3
1044
Normal
-0.3
968
Normal
-0.3
777
Tumor
-0.3
755
Tumor
-0.3
192
Normal
-0.3
1032
Normal
-0.3
415
Tumor
-0.3
823
Tumor
-0.3
728
Normal
-0.3
463
Tumor
-0.3
1014
Normal
-0.3
483
Tumor
-0.3
922
Normal
-0.3
967
Tumor
-0.3
966
Normal
-0.3
277
Tumor
-0.3
558
Normal
-0.3
963
Tumor
-0.3
493
Tumor
-0.3
635
Tumor
-0.3
958
Normal
-0.4
617
Tumor
-0.4
641
Tumor
-0.4
147
Tumor
-0.4
224
Normal
-0.4
878
Normal
-0.4
727
Tumor
-0.4
926
Normal
-0.4
473
Tumor
-0.4
494
Normal
-0.4
957
Tumor
-0.4
861
Tumor
-0.4
363
Tumor
-0.4
1031
Tumor
-0.4
647
Tumor
-0.4
497
Tumor
-0.4
778
Normal
-0.4
918
Normal
-0.4
431
Tumor
-0.4
628
Normal
-0.4
545
Tumor
-0.4
686
Normal
-0.5
484
Normal
-0.5
1042
Normal
-0.5
283
Tumor
-0.5
716
Normal
-0.5
355
Tumor
-0.5
921
Tumor
-0.5
211
Tumor
-0.5
785
Tumor
-0.5
924
Normal
-0.5
915
Tumor
-0.5
917
Tumor
-0.5
125
Tumor
-0.6
498
Normal
-0.6
488
Normal
-0.6
923
Tumor
-0.6
487
Tumor
-0.6
713
Tumor
-0.6
943
Tumor
-0.6
981
Tumor
-0.6
478
Normal
-0.6
916
Normal
-0.7
863
Tumor
-0.7
937
Tumor
-0.7
491
Tumor
-0.8
492
Normal
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
