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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZSWIM8 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
30.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
149.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
91.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
79.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
74.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
74.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
71.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
70.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
65.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
64.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
64.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
62.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
60.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
59.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
59.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
59.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
57.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
55.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
55.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
53.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
53.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
52.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
52.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
52.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
51.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
49.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
48.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
48.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
48.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
48.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
47.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
47.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
47.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
47.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
46.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
46.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
46.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
46.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
45.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
45.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
45.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
44.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
43.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
43.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
42.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
42.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
42.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
42.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
41.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
41.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
41.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
41.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
40.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
40.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
40.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
40.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
40.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
40.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
40.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
40.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
40.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
39.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
39.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
39.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
39.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
39.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
39.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
38.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
38.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
38.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
38.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
38.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
38.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
38.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
38.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
37.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
37.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
37.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
37.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
36.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
36.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
35.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
35.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
35.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
35.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
35.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
35.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
35.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
35.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
35.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
35.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
35.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
34.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
34.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
34.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
34.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
34.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
34.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
34.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
34.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
34.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
34.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
33.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
33.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
33.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
33.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
33.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
33.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
33.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
33.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
33.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
33.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
32.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
32.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
32.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
32.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
32.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
32.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
32.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
32.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
32.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
32.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
32.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
32.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
32.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
32.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
31.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
31.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
31.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
31.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
31.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
31.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
30.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
30.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
30.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
30.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
30.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
30.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
30.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
30.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
30.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
30.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
30.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
30.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
29.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
29.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
29.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
29.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
29.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
29.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
29.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
29.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
29.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
29.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
28.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
28.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
28.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
28.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
28.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
28.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
28.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
28.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
28.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
28.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
28.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
28.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
28.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
28.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
27.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
27.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
27.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
27.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
27.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
27.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
27.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
27.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
27.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
27.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
27.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
27.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
27.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
26.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
26.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
26.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
26.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
26.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
26.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
26.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
26.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
26.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
26.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
26.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
26.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
26.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
26.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
26.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
26.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
26.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
26.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
26.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
26.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
26.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
26.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
26.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
25.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
25.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
25.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
25.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
25.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
25.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
25.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
25.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
25.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
25.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
25.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
25.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
25.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
25.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
25.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
25.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
24.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
24.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
24.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
24.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
24.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
24.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
24.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
24.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
24.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
24.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
24.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
24.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
24.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
24.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
24.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
24.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
24.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
24.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
24.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
23.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
23.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
23.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
23.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
23.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
23.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
23.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
23.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
23.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
23.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
23.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
23.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
23.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
22.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
22.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
22.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
22.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
22.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
22.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
22.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
22.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
22.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
22.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
22.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
22.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
22.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
22.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
22.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
21.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
21.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
21.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
21.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
21.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
21.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
21.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
21.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
21.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
21.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
21.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
21.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
21.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
21.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
20.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
20.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
20.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
20.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
20.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
20.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
20.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
20.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
20.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
20.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
20.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
20.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
20.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
20.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
20.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
19.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
19.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
19.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
19.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
19.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
19.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
19.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
19.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
19.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
19.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
19.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
19.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
19.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
19.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
19.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
19.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
19.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
18.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
18.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
18.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
18.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
18.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
18.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
18.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
17.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
17.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
17.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
17.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
17.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
17.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
16.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
16.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
16.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
16.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
16.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
16.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
16.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
16.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
15.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
15.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
15.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
15.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
14.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
14.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
13.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
13.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
11.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
11.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
231
Tumor
0.6
636
Normal
0.4
428
Normal
0.4
915
Tumor
0.4
648
Normal
0.4
466
Normal
0.4
464
Normal
0.4
114
Normal
0.4
376
Normal
0.3
426
Normal
0.3
666
Normal
0.3
477
Tumor
0.3
616
Normal
0.3
553
Tumor
0.3
473
Tumor
0.3
414
Normal
0.3
618
Normal
0.3
196
Normal
0.3
261
Tumor
0.3
127
Tumor
0.3
884
Normal
0.3
824
Normal
0.3
664
Normal
0.3
128
Normal
0.3
257
Tumor
0.3
422
Normal
0.3
161
Tumor
0.3
815
Tumor
0.3
358
Normal
0.3
818
Normal
0.3
537
Tumor
0.3
518
Normal
0.3
468
Normal
0.3
361
Tumor
0.3
124
Normal
0.3
271
Tumor
0.3
443
Tumor
0.3
911
Tumor
0.3
642
Normal
0.3
953
Tumor
0.3
218
Normal
0.3
965
Tumor
0.3
421
Tumor
0.3
534
Normal
0.3
924
Normal
0.3
714
Normal
0.2
148
Normal
0.2
925
Tumor
0.2
858
Normal
0.2
628
Normal
0.2
132
Normal
0.2
327
Tumor
0.2
145
Tumor
0.2
172
Normal
0.2
742
Normal
0.2
483
Tumor
0.2
111
Normal
0.2
362
Normal
0.2
912
Normal
0.2
918
Normal
0.2
816
Normal
0.2
113
Tumor
0.2
958
Normal
0.2
147
Tumor
0.2
533
Tumor
0.2
162
Normal
0.2
722
Normal
0.2
388
Normal
0.2
214
Normal
0.2
744
Normal
0.2
123
Tumor
0.2
171
Tumor
0.2
1042
Normal
0.2
567
Tumor
0.2
433
Tumor
0.2
228
Normal
0.2
546
Normal
0.2
715
Tumor
0.2
384
Normal
0.2
1041
Tumor
0.2
883
Tumor
0.2
125
Tumor
0.2
472
Normal
0.2
1025
Tumor
0.2
451
Tumor
0.2
222
Normal
0.2
514
Normal
0.2
484
Normal
0.2
662
Normal
0.2
957
Tumor
0.2
462
Normal
0.2
926
Normal
0.2
186
Normal
0.2
456
Normal
0.2
191
Tumor
0.2
1032
Normal
0.2
481
Tumor
0.2
1027
Tumor
0.2
431
Tumor
0.2
465
Tumor
0.2
368
Normal
0.2
922
Normal
0.2
914
Normal
0.2
877
Tumor
0.2
277
Tumor
0.2
554
Normal
0.2
1046
Normal
0.2
964
Normal
0.2
923
Tumor
0.2
262
Normal
0.2
126
Normal
0.2
471
Tumor
0.2
423
Tumor
0.2
328
Normal
0.2
978
Normal
0.2
921
Tumor
0.1
432
Normal
0.1
413
Tumor
0.1
672
Normal
0.1
394
Normal
0.1
448
Normal
0.1
528
Normal
0.1
344
Normal
0.1
436
Normal
0.1
366
Normal
0.1
392
Normal
0.1
474
Normal
0.1
356
Normal
0.1
482
Normal
0.1
716
Normal
0.1
467
Tumor
0.1
1044
Normal
0.1
232
Normal
0.1
686
Normal
0.1
545
Tumor
0.1
723
Tumor
0.1
112
Tumor
0.1
136
Normal
0.1
284
Normal
0.1
878
Normal
0.1
557
Tumor
0.1
355
Tumor
0.1
342
Normal
0.1
446
Normal
0.1
258
Normal
0.1
396
Normal
0.1
488
Normal
0.1
272
Normal
0.1
1022
Normal
0.1
671
Tumor
0.1
696
Normal
0.1
786
Normal
0.1
882
Normal
0.1
698
Normal
0.1
452
Normal
0.1
976
Normal
0.1
1014
Normal
0.1
283
Tumor
0.1
427
Tumor
0.1
1026
Normal
0.1
364
Normal
0.1
1028
Normal
0.1
852
Normal
0.1
212
Normal
0.1
435
Tumor
0.1
365
Tumor
0.1
1016
Normal
0.1
966
Normal
0.1
526
Normal
0.1
286
Normal
0.1
268
Normal
0.1
916
Normal
0.1
568
Normal
0.1
498
Normal
0.1
851
Tumor
0.1
743
Tumor
0.1
956
Normal
0.1
524
Normal
0.1
721
Tumor
0.1
814
Normal
0.1
728
Normal
0.1
572
Normal
0.1
146
Normal
0.1
434
Normal
0.1
864
Normal
0.1
138
Normal
0.1
968
Normal
0.1
354
Normal
0.1
217
Tumor
0.1
185
Tumor
0.1
412
Normal
0.1
564
Normal
0.1
424
Normal
0.1
416
Normal
0.1
455
Tumor
0.1
192
Normal
0.1
813
Tumor
0.0
983
Tumor
0.0
142
Normal
0.0
981
Tumor
0.0
445
Tumor
0.0
352
Normal
0.0
313
Tumor
0.0
353
Tumor
0.0
558
Normal
0.0
375
Tumor
0.0
665
Tumor
0.0
494
Normal
0.0
641
Tumor
0.0
298
Normal
0.0
497
Tumor
0.0
938
Normal
0.0
862
Normal
0.0
411
Tumor
0.0
314
Normal
0.0
615
Tumor
0.0
756
Normal
0.0
647
Tumor
0.0
745
Tumor
0.0
278
Normal
0.0
738
Normal
0.0
868
Normal
0.0
285
Tumor
0.0
188
Normal
0.0
267
Tumor
0.0
135
Tumor
0.0
386
Normal
0.0
393
Tumor
0.0
881
Tumor
0.0
357
Tumor
0.0
857
Tumor
0.0
187
Tumor
0.0
955
Tumor
0.0
685
Tumor
0.0
982
Normal
0.0
984
Normal
0.0
221
Tumor
0.0
823
Tumor
0.0
867
Tumor
0.0
785
Tumor
0.0
444
Normal
0.0
724
Normal
0.0
1043
Tumor
0.0
627
Tumor
0.0
746
Normal
0.0
516
Normal
0.0
367
Tumor
0.0
527
Tumor
0.0
536
Normal
0.0
195
Tumor
0.0
425
Tumor
0.0
538
Normal
0.0
332
Normal
0.0
312
Normal
0.0
727
Tumor
0.0
695
Tumor
0.0
977
Tumor
-0.1
713
Tumor
-0.1
224
Normal
-0.1
874
Normal
-0.1
131
Tumor
-0.1
574
Normal
-0.1
223
Tumor
-0.1
385
Tumor
-0.1
213
Tumor
-0.1
463
Tumor
-0.1
663
Tumor
-0.1
866
Normal
-0.1
478
Normal
-0.1
778
Normal
-0.1
944
Normal
-0.1
351
Tumor
-0.1
311
Tumor
-0.1
952
Normal
-0.1
523
Tumor
-0.1
661
Tumor
-0.1
341
Tumor
-0.1
741
Tumor
-0.1
211
Tumor
-0.1
937
Tumor
-0.1
391
Tumor
-0.1
447
Tumor
-0.1
513
Tumor
-0.1
137
Tumor
-0.1
297
Tumor
-0.1
383
Tumor
-0.1
1031
Tumor
-0.1
635
Tumor
-0.1
492
Normal
-0.1
563
Tumor
-0.1
387
Tumor
-0.1
331
Tumor
-0.1
951
Tumor
-0.1
493
Tumor
-0.1
873
Tumor
-0.1
777
Tumor
-0.1
395
Tumor
-0.1
517
Tumor
-0.1
363
Tumor
-0.1
975
Tumor
-0.1
415
Tumor
-0.1
863
Tumor
-0.2
343
Tumor
-0.2
617
Tumor
-0.2
573
Tumor
-0.2
697
Tumor
-0.2
227
Tumor
-0.2
1015
Tumor
-0.2
1045
Tumor
-0.2
141
Tumor
-0.2
1021
Tumor
-0.2
943
Tumor
-0.2
963
Tumor
-0.2
861
Tumor
-0.2
571
Tumor
-0.2
917
Tumor
-0.2
913
Tumor
-0.2
525
Tumor
-0.2
491
Tumor
-0.2
954
Normal
-0.2
461
Tumor
-0.2
487
Tumor
-0.2
515
Tumor
-0.3
967
Tumor
-0.3
755
Tumor
-0.3
737
Tumor
-0.3
817
Tumor
-0.3
865
Tumor
-0.3
1013
Tumor
-0.4
535
Tumor
-0.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
