MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:0.3 nTPM
HPA Brain:10.0 nTPM
GTEx:0.3 nTPM
FANTOM5:25.3 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 10.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.7
2219 Male, age 76, both hemispheres 11.3
1830 Male, age 51, unknown 9.9
1870 Female, age 42, unknown 9.9
2411 Female, age 72, unknown 9.8
1833 Male, age 53, unknown 9.6
1827 Male, age 72, unknown 7.4
2586 Male, age 75, left hemisphere 7.4
2666 Male, age 74, left hemisphere 7.2
2828 Female, age 72, unknown 7.2
2019 Male, age 18, unknown 7.0
Dorsal raphe nucleus
nTPM: 7.4
2750 Male, age 76, both hemispheres 9.3
2016 Female, age 72, unknown 8.1
2047 Male, age 72, unknown 6.7
2298 Female, age 72, unknown 6.6
1828 Male, age 53, unknown 6.4
Inferior colliculus
nTPM: 8.0
2849 Male, age 72, unknown 9.0
2097 Female, age 72, unknown 8.4
1848 Female, age 42, unknown 7.6
1890 Male, age 53, unknown 7.0
Median raphe nucleus
nTPM: 6.7
2220 Male, age 76, midline 6.7
Periaquaductal grey, anterior
nTPM: 6.0
2502 Female, age 75, unknown 6.4
1795 Male, age 51, unknown 6.0
1947 Male, age 18, unknown 5.5
Periaquaductal grey, dorsal
nTPM: 7.6
2464 Female, age 72, unknown 8.8
1840 Male, age 53, unknown 8.2
2850 Male, age 76, both hemispheres 7.7
1831 Male, age 72, unknown 5.8
Periaquaductal grey, lateral
nTPM: 7.2
2053 Male, age 18, unknown 8.0
2140 Male, age 76, both hemispheres 6.9
2272 Male, age 74, both hemispheres 6.5
Pretectal area
nTPM: 7.1
2825 Male, age 18, unknown 10.5
2224 Female, age 72, unknown 8.9
2667 Female, age 75, unknown 8.4
2407 Male, age 75, both hemispheres 7.8
1815 Male, age 53, unknown 6.7
2316 Male, age 76, right hemisphere 6.6
2273 Male, age 74, both hemispheres 6.4
1817 Female, age 42, unknown 6.2
2007 Male, age 72, unknown 6.2
1944 Female, age 72, unknown 5.6
1816 Male, age 51, unknown 4.4
Red nucleus
nTPM: 10.0
2823 Male, age 76, right hemisphere 11.7
1954 Female, age 42, unknown 11.5
2769 Male, age 72, unknown 11.5
2227 Male, age 72, unknown 11.1
1821 Female, age 72, unknown 11.0
1904 Male, age 53, unknown 10.7
1865 Male, age 51, unknown 10.6
2503 Female, age 72, unknown 10.0
2584 Male, age 75, left hemisphere 8.7
2588 Male, age 74, left hemisphere 8.7
2725 Female, age 75, unknown 7.4
2785 Male, age 18, unknown 7.2
Substantia nigra
nTPM: 9.6
2241 Male, age 72, unknown 13.4
1916 Female, age 42, unknown 11.7
2699 Male, age 18, unknown 10.9
2409 Female, age 72, unknown 10.3
1851 Male, age 51, unknown 9.7
2590 Female, age 75, unknown 8.4
1941 Male, age 53, unknown 8.3
2583 Male, age 75, right hemisphere 7.9
1889 Female, age 72, unknown 7.6
2665 Male, age 74, both hemispheres 7.5
Superior colliculus
nTPM: 6.8
1839 Male, age 51, unknown 9.1
2668 Female, age 75, unknown 7.8
1895 Male, age 76, right hemisphere 7.2
2587 Male, age 74, left hemisphere 7.1
2664 Male, age 75, both hemispheres 7.0
1796 Male, age 53, unknown 6.4
1913 Female, age 42, unknown 6.1
2261 Male, age 18, unknown 6.1
2087 Female, age 72, unknown 5.8
1995 Male, age 72, unknown 5.7
Ventral tegmental area
nTPM: 9.2
2021 Male, age 53, unknown 10.8
1915 Female, age 42, unknown 9.4
2218 Male, age 76, both hemispheres 9.0
2410 Female, age 72, unknown 8.9
2223 Female, age 72, unknown 8.7
1942 Male, age 51, unknown 8.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 0.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 0.3
Samples: 139

Max nTPM: 1.1
Min nTPM: 0.0
Std nTPM: 0.2
Median nTPM: 0.3
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 1.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 1.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 0.9
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 0.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 0.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 0.8
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 0.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 0.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 0.7
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 0.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 0.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 25.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 25.3
FF:10158-103A5 76 years, female 25.3

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