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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
STARD10 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
299.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
899.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
846.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
774.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
760.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
725.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
718.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
706.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
692.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
684.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
679.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
660.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
656.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
643.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
639.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
634.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
631.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
629.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
629.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
622.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
608.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
603.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
592.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
581.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
579.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
569.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
568.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
564.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
559.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
549.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
547.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
545.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
544.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
538.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
536.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
535.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
534.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
533.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
533.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
533.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
520.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
517.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
514.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
514.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
512.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
511.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
510.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
510.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
509.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
506.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
504.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
503.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
503.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
500.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
500.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
499.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
495.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
487.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
484.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
479.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
477.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
475.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
461.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
460.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
459.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
453.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
451.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
451.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
445.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
439.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
436.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
436.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
430.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
428.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
423.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
423.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
419.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
412.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
412.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
409.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
408.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
406.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
405.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
403.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
401.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
399.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
398.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
397.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
396.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
391.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
390.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
388.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
387.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
387.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
386.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
382.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
379.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
378.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
378.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
373.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
371.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
370.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
369.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
368.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
367.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
367.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
367.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
361.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
358.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
358.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
357.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
357.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
357.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
357.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
357.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
354.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
354.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
353.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
352.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
352.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
347.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
346.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
346.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
343.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
342.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
342.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
341.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
340.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
340.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
337.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
336.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
336.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
335.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
333.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
332.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
331.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
330.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
330.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
328.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
328.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
327.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
324.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
323.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
323.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
321.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
320.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
318.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
316.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
315.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
314.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
313.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
312.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
311.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
311.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
309.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
308.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
308.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
305.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
305.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
304.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
303.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
301.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
301.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
300.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
298.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
293.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
291.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
290.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
290.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
286.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
285.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
284.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
284.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
284.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
283.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
283.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
282.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
282.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
282.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
282.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
280.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
277.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
275.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
274.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
273.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
270.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
270.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
268.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
266.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
266.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
266.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
264.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
264.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
262.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
259.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
258.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
257.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
255.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
255.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
255.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
253.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
253.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
248.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
248.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
247.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
246.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
245.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
242.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
241.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
238.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
235.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
235.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
234.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
234.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
233.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
232.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
229.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
227.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
227.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
226.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
226.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
223.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
221.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
221.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
220.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
220.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
219.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
219.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
218.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
217.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
217.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
216.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
216.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
216.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
215.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
213.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
213.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
213.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
212.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
212.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
212.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
211.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
209.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
209.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
207.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
207.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
205.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
205.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
203.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
201.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
200.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
200.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
199.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
199.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
198.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
198.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
195.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
193.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
192.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
192.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
192.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
190.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
189.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
189.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
187.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
187.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
185.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
185.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
183.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
182.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
180.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
179.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
179.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
178.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
178.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
177.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
176.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
175.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
175.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
175.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
174.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
172.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
168.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
167.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
165.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
164.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
163.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
160.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
159.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
159.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
159.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
158.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
155.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
154.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
154.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
152.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
152.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
147.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
145.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
143.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
143.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
143.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
141.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
140.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
136.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
136.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
135.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
134.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
134.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
133.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
132.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
129.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
129.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
128.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
126.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
125.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
120.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
117.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
113.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
112.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
109.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
107.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
106.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
105.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
105.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
105.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
104.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
104.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
103.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
102.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
102.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
102.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
100.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
98.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
98.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
98.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
98.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
98.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
96.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
95.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
94.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
92.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
91.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
91.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
91.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
89.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
86.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
84.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
82.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
81.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
79.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
57.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
57.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
49.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
48.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
47.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
45.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
44.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
23.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
22.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
22.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
18.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
STARD10 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
146.4
Number of samples
231
Samples
Sample
Description
TPM
DO23511
0 years, female, NA, stage:3, dead, 180 days
782.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
691.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
673.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
627.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
598.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
597.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
534.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
466.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
452.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
437.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
436.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
419.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
398.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
358.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
344.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
339.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
326.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
311.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
305.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
292.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
292.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
283.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
283.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
269.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
263.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
259.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
255.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
246.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
245.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
245.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
244.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
244.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
243.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
238.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
227.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
227.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
214.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
212.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
212.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
207.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
204.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
204.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
199.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
198.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
196.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
195.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
194.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
190.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
190.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
190.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
190.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
188.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
185.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
182.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
182.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
180.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
178.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
178.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
176.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
176.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
173.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
173.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
171.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
168.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
165.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
165.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
164.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
163.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
161.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
161.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
160.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
158.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
154.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
151.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
151.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
150.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
149.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
147.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
146.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
146.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
145.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
143.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
143.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
141.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
141.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
140.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
138.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
138.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
137.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
136.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
136.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
136.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
134.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
134.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
132.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
132.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
131.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
130.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
130.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
130.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
129.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
129.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
128.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
128.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
127.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
125.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
125.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
125.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
125.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
123.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
123.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
121.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
120.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
119.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
118.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
118.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
116.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
114.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
114.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
113.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
111.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
110.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
109.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
107.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
106.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
104.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
104.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
104.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
103.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
102.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
101.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
100.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
100.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
99.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
99.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
98.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
96.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
96.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
95.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
94.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
94.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
94.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
93.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
92.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
91.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
89.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
89.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
89.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
88.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
88.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
88.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
88.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
87.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
87.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
86.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
86.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
86.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
84.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
83.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
81.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
80.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
80.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
79.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
75.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
75.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
75.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
74.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
73.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
73.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
72.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
70.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
70.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
70.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
70.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
69.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
68.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
66.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
66.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
66.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
66.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
65.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
65.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
64.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
63.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
63.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
62.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
62.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
62.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
61.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
59.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
56.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
54.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
53.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
52.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
51.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
50.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
50.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
50.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
48.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
47.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
44.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
44.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
44.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
43.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
41.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
41.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
40.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
40.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
38.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
38.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
38.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
37.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
36.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
34.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
34.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
33.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
31.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
30.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
29.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
26.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
26.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
25.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
23.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
20.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
16.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
15.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
11.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
741
Tumor
1.3
513
Tumor
0.9
436
Normal
0.9
162
Normal
0.9
128
Normal
0.8
172
Normal
0.8
365
Tumor
0.8
464
Normal
0.8
746
Normal
0.8
196
Normal
0.8
465
Tumor
0.7
911
Tumor
0.7
426
Normal
0.7
824
Normal
0.7
648
Normal
0.7
428
Normal
0.7
362
Normal
0.7
148
Normal
0.7
616
Normal
0.7
258
Normal
0.7
111
Normal
0.7
664
Normal
0.7
132
Normal
0.6
482
Normal
0.6
422
Normal
0.6
278
Normal
0.6
628
Normal
0.6
212
Normal
0.6
756
Normal
0.6
332
Normal
0.6
466
Normal
0.6
1046
Normal
0.6
314
Normal
0.6
114
Normal
0.6
698
Normal
0.6
127
Tumor
0.6
394
Normal
0.6
446
Normal
0.6
1042
Normal
0.6
272
Normal
0.6
618
Normal
0.6
342
Normal
0.6
723
Tumor
0.6
262
Normal
0.6
564
Normal
0.5
388
Normal
0.5
366
Normal
0.5
186
Normal
0.5
1022
Normal
0.5
386
Normal
0.5
518
Normal
0.5
232
Normal
0.5
136
Normal
0.5
627
Tumor
0.5
568
Normal
0.5
376
Normal
0.5
298
Normal
0.5
396
Normal
0.5
424
Normal
0.5
858
Normal
0.5
866
Normal
0.5
981
Tumor
0.5
514
Normal
0.5
938
Normal
0.5
432
Normal
0.5
358
Normal
0.5
188
Normal
0.5
546
Normal
0.5
456
Normal
0.5
356
Normal
0.5
1032
Normal
0.5
474
Normal
0.5
714
Normal
0.5
862
Normal
0.5
912
Normal
0.5
261
Tumor
0.5
978
Normal
0.5
534
Normal
0.4
468
Normal
0.4
642
Normal
0.4
138
Normal
0.4
816
Normal
0.4
716
Normal
0.4
462
Normal
0.4
481
Tumor
0.4
472
Normal
0.4
852
Normal
0.4
976
Normal
0.4
818
Normal
0.4
312
Normal
0.4
222
Normal
0.4
742
Normal
0.4
738
Normal
0.4
878
Normal
0.4
915
Tumor
0.4
1026
Normal
0.4
414
Normal
0.4
528
Normal
0.4
392
Normal
0.4
1041
Tumor
0.4
786
Normal
0.4
412
Normal
0.4
448
Normal
0.4
137
Tumor
0.4
864
Normal
0.4
516
Normal
0.4
574
Normal
0.4
956
Normal
0.4
615
Tumor
0.3
636
Normal
0.3
964
Normal
0.3
868
Normal
0.3
722
Normal
0.3
126
Normal
0.3
884
Normal
0.3
228
Normal
0.3
484
Normal
0.3
526
Normal
0.3
874
Normal
0.3
286
Normal
0.3
214
Normal
0.3
416
Normal
0.3
944
Normal
0.3
558
Normal
0.3
284
Normal
0.3
268
Normal
0.3
142
Normal
0.3
662
Normal
0.3
982
Normal
0.3
914
Normal
0.3
617
Tumor
0.3
452
Normal
0.3
728
Normal
0.3
328
Normal
0.3
882
Normal
0.3
431
Tumor
0.3
572
Normal
0.3
952
Normal
0.3
368
Normal
0.2
327
Tumor
0.2
554
Normal
0.2
1014
Normal
0.2
867
Tumor
0.2
958
Normal
0.2
1028
Normal
0.2
451
Tumor
0.2
434
Normal
0.2
778
Normal
0.2
218
Normal
0.2
666
Normal
0.2
777
Tumor
0.2
354
Normal
0.2
146
Normal
0.2
924
Normal
0.2
918
Normal
0.2
411
Tumor
0.2
696
Normal
0.2
916
Normal
0.2
686
Normal
0.2
926
Normal
0.1
494
Normal
0.1
968
Normal
0.1
1016
Normal
0.1
1043
Tumor
0.1
423
Tumor
0.1
954
Normal
0.1
861
Tumor
0.1
863
Tumor
0.1
966
Normal
0.1
361
Tumor
0.1
1027
Tumor
0.1
384
Normal
0.1
195
Tumor
0.1
1044
Normal
0.1
922
Normal
0.1
352
Normal
0.1
364
Normal
0.0
488
Normal
0.0
538
Normal
0.0
124
Normal
0.0
477
Tumor
0.0
984
Normal
0.0
413
Tumor
0.0
444
Normal
0.0
563
Tumor
-0.1
344
Normal
-0.1
955
Tumor
-0.1
557
Tumor
-0.1
744
Normal
-0.1
271
Tumor
-0.1
478
Normal
-0.1
755
Tumor
-0.1
715
Tumor
-0.1
217
Tumor
-0.1
192
Normal
-0.1
641
Tumor
-0.1
387
Tumor
-0.1
185
Tumor
-0.1
267
Tumor
-0.1
421
Tumor
-0.1
224
Normal
-0.1
785
Tumor
-0.2
353
Tumor
-0.2
171
Tumor
-0.2
498
Normal
-0.2
857
Tumor
-0.2
161
Tumor
-0.2
492
Normal
-0.2
145
Tumor
-0.2
113
Tumor
-0.2
524
Normal
-0.2
923
Tumor
-0.2
487
Tumor
-0.2
523
Tumor
-0.3
135
Tumor
-0.3
187
Tumor
-0.3
375
Tumor
-0.3
461
Tumor
-0.3
471
Tumor
-0.3
1045
Tumor
-0.3
221
Tumor
-0.3
443
Tumor
-0.3
921
Tumor
-0.3
285
Tumor
-0.3
415
Tumor
-0.3
672
Normal
-0.3
331
Tumor
-0.3
937
Tumor
-0.3
913
Tumor
-0.4
925
Tumor
-0.4
257
Tumor
-0.4
977
Tumor
-0.4
483
Tumor
-0.4
427
Tumor
-0.4
455
Tumor
-0.4
147
Tumor
-0.4
713
Tumor
-0.4
975
Tumor
-0.5
141
Tumor
-0.5
227
Tumor
-0.5
363
Tumor
-0.5
685
Tumor
-0.5
865
Tumor
-0.5
823
Tumor
-0.5
123
Tumor
-0.5
515
Tumor
-0.5
1031
Tumor
-0.5
445
Tumor
-0.5
297
Tumor
-0.5
191
Tumor
-0.6
391
Tumor
-0.6
517
Tumor
-0.6
463
Tumor
-0.6
393
Tumor
-0.6
473
Tumor
-0.6
537
Tumor
-0.6
695
Tumor
-0.6
223
Tumor
-0.6
1015
Tumor
-0.6
635
Tumor
-0.6
467
Tumor
-0.6
721
Tumor
-0.6
873
Tumor
-0.6
953
Tumor
-0.6
814
Normal
-0.6
881
Tumor
-0.6
967
Tumor
-0.6
536
Normal
-0.6
545
Tumor
-0.6
571
Tumor
-0.7
447
Tumor
-0.7
1021
Tumor
-0.7
1013
Tumor
-0.7
231
Tumor
-0.7
313
Tumor
-0.7
697
Tumor
-0.7
877
Tumor
-0.7
553
Tumor
-0.7
341
Tumor
-0.7
525
Tumor
-0.7
395
Tumor
-0.7
112
Tumor
-0.7
435
Tumor
-0.8
357
Tumor
-0.8
131
Tumor
-0.8
917
Tumor
-0.8
647
Tumor
-0.8
943
Tumor
-0.9
727
Tumor
-0.9
665
Tumor
-0.9
527
Tumor
-0.9
567
Tumor
-0.9
883
Tumor
-0.9
277
Tumor
-0.9
737
Tumor
-0.9
355
Tumor
-0.9
493
Tumor
-1.0
983
Tumor
-1.0
385
Tumor
-1.0
533
Tumor
-1.0
491
Tumor
-1.0
433
Tumor
-1.0
963
Tumor
-1.0
367
Tumor
-1.0
813
Tumor
-1.1
383
Tumor
-1.2
213
Tumor
-1.2
125
Tumor
-1.2
1025
Tumor
-1.2
311
Tumor
-1.2
671
Tumor
-1.2
724
Normal
-1.2
965
Tumor
-1.2
663
Tumor
-1.2
661
Tumor
-1.3
351
Tumor
-1.3
497
Tumor
-1.3
817
Tumor
-1.3
743
Tumor
-1.3
851
Tumor
-1.3
745
Tumor
-1.3
535
Tumor
-1.4
211
Tumor
-1.4
573
Tumor
-1.4
951
Tumor
-1.4
283
Tumor
-1.4
957
Tumor
-1.5
343
Tumor
-1.6
815
Tumor
-1.7
425
Tumor
-1.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.