HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:14.3 nTPM
HPA Brain:34.3 nTPM
GTEx:14.3 nTPM
FANTOM5:16.1 Scaled Tags Per Million
Pig:21.3 nTPM
Mouse:20.5 nTPM
Allen mouse:0.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA037612
Glial cells Not detected
Neuronal cells High


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 34.3
Sample id Sample description nTPM
Hippocampus
nTPM: 31.2
2621 Female, age 67, right hemisphere 42.8
2148 Female, age 91, left hemisphere 41.1
1911 Female, age 85, right hemisphere 30.8
2529 Female, age 94, left hemisphere 26.0
1898 Male, age 80, left hemisphere 23.9
1855 Male, age 76, left hemisphere 22.5
Dentate gyrus
nTPM: 34.3
1927 Female, age 91, both hemispheres 50.0
2530 Female, age 94, left hemisphere 43.3
2531 Female, age 67, both hemispheres 37.4
2528 Male, age 74, both hemispheres 27.2
2246 Female, age 85, both hemispheres 24.1
2010 Male, age 76, both hemispheres 23.7
Entorhinal gyrus
nTPM: 22.4
2613 Female, age 94, left hemisphere 40.7
1938 Female, age 85, left hemisphere 23.7
1787 Male, age 76, left hemisphere 19.2
2764 Male, age 80, right hemisphere 18.4
2117 Female, age 91, right hemisphere 16.4
2686 Male, age 75, right hemisphere 15.8
Hippocampus, CA1
nTPM: 29.4
2749 Male, age 80, left hemisphere 43.0
1873 Female, age 85, both hemispheres 40.8
2527 Male, age 74, both hemispheres 29.4
2045 Male, age 76, both hemispheres 21.9
2082 Female, age 91, right hemisphere 11.7
Hippocampus, CA2
nTPM: 28.4
1963 Male, age 80, left hemisphere 71.3
2437 Female, age 94, left hemisphere 27.1
1892 Male, age 76, both hemispheres 25.3
2249 Male, age 74, both hemispheres 21.0
1940 Female, age 85, left hemisphere 13.0
2113 Female, age 91, right hemisphere 12.5
Hippocampus, CA3
nTPM: 27.6
2861 Female, age 67, both hemispheres 46.9
2620 Female, age 94, left hemisphere 36.2
2137 Male, age 80, left hemisphere 30.1
1891 Female, age 85, both hemispheres 20.7
2436 Male, age 74, both hemispheres 16.0
1867 Male, age 76, both hemispheres 15.7
Parahippocampal cortex
nTPM: 15.5
2250 Female, age 67, right hemisphere 21.4
2245 Female, age 91, both hemispheres 19.4
2693 Female, age 94, both hemispheres 19.0
1990 Female, age 91, right hemisphere 18.7
1933 Female, age 85, both hemispheres 18.4
2692 Male, age 74, both hemispheres 16.7
2532 Female, age 72, left hemisphere 11.7
1850 Male, age 80, both hemispheres 10.9
2622 Female, age 67, right hemisphere 10.6
2018 Male, age 76, both hemispheres 8.2
Perirhinal gyrus
nTPM: 15.5
2521 Female, age 94, right hemisphere 21.3
1847 Female, age 91, left hemisphere 20.5
1841 Female, age 85, right hemisphere 13.3
2848 Male, age 76, right hemisphere 11.7
1794 Male, age 80, right hemisphere 10.5
Subiculum
nTPM: 16.5
1977 Female, age 85, both hemispheres 21.0
2619 Male, age 74, both hemispheres 18.0
2729 Female, age 91, right hemisphere 16.4
1901 Male, age 80, both hemispheres 15.6
2042 Male, age 76, both hemispheres 15.1
2438 Female, age 94, left hemisphere 12.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 14.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 14.3
Samples: 197

Max nTPM: 38.8
Min nTPM: 1.4
Std nTPM: 7.6
Median nTPM: 12.7
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 38.8
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 37.9
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 36.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 33.7
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 33.2
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 32.9
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 31.7
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 31.6
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 31.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 31.3
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 29.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 16.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 16.1
FF:10153-102I9 76 years, female 17.8
FF:10169-103B7 60 years, female 14.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 21.3
Pig sample Sample description nTPM
Subiculum
nTPM: 18.9
Samples: 4

Max nTPM: 24.4
Min nTPM: 15.6
Sample A Female 24.4
Sample B Female 19.4
Sample C Male 15.6
Sample D Male 16.3
Dorsal hippocampus
nTPM: 18.2
Samples: 4

Max nTPM: 22.5
Min nTPM: 12.9
Sample A Female 22.5
Sample B Female 21.5
Sample C Male 12.9
Sample D Male 15.9
Entorhinal cortex
nTPM: 21.3
Samples: 4

Max nTPM: 23.2
Min nTPM: 18.8
Sample A Female 23.1
Sample B Female 18.8
Sample C Male 23.2
Sample D Male 19.9
Ventral hippocampus
nTPM: 17.5
Samples: 4

Max nTPM: 23.5
Min nTPM: 14.2
Sample A Female 15.0
Sample B Female 14.2
Sample C Male 17.3
Sample D Male 23.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 20.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 20.5
Samples: 4

Max nTPM: 22.5
Min nTPM: 16.5
Sample A Male 21.7
Sample B Male 21.2
Sample C Female 16.5
Sample D Female 22.5
Hippocampal formation
nTPM: 13.7
Samples: 4

Max nTPM: 17.2
Min nTPM: 11.7
Sample A Male 17.2
Sample B Male 14.1
Sample C Female 11.8
Sample D Female 11.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.1
71496233 Antisense, RP_050913_04_A12, Mouse strain C57BL/6J (56 days, male) 0.2
77904879 Antisense, RP_070212_03_G12, Mouse strain C57BL/6J (56 days, male) 0.1

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