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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
11.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
3.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
3.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
2.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
2.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
2.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
2.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
1.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
1.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
1.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
0.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
0.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.7
Number of samples
231
Samples
Sample
Description
TPM
DO45155
0 years, male, NA, stage:2, alive, 2160 days
24.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
22.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
22.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
21.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
1.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
1.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
1.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
1.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
1.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
1.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
0.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
0.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
0.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
0.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
0.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
0.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
0.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
0.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
0.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
0.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
0.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
0.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
0.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
0.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
0.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
0.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
0.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
0.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
0.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
0.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
0.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
123
Tumor
3.8
391
Tumor
3.7
473
Tumor
3.5
874
Normal
3.3
635
Tumor
3.1
965
Tumor
2.8
863
Tumor
2.6
661
Tumor
2.6
1015
Tumor
2.5
283
Tumor
2.4
755
Tumor
2.2
267
Tumor
2.1
866
Normal
2.0
141
Tumor
2.0
231
Tumor
1.8
127
Tumor
1.7
665
Tumor
1.7
361
Tumor
1.5
387
Tumor
1.2
535
Tumor
1.2
367
Tumor
1.1
491
Tumor
1.1
615
Tumor
1.0
137
Tumor
0.9
785
Tumor
0.8
214
Normal
0.8
1028
Normal
0.8
222
Normal
0.8
497
Tumor
0.8
1032
Normal
0.8
1022
Normal
0.8
196
Normal
0.8
647
Tumor
0.6
375
Tumor
0.6
666
Normal
0.6
257
Tumor
0.6
311
Tumor
0.5
365
Tumor
0.5
493
Tumor
0.5
721
Tumor
0.5
1042
Normal
0.5
415
Tumor
0.4
487
Tumor
0.4
284
Normal
0.4
862
Normal
0.4
313
Tumor
0.4
1026
Normal
0.3
492
Normal
0.3
268
Normal
0.3
663
Tumor
0.3
368
Normal
0.3
483
Tumor
0.3
716
Normal
0.3
384
Normal
0.2
713
Tumor
0.2
416
Normal
0.2
722
Normal
0.2
363
Tumor
0.2
366
Normal
0.1
355
Tumor
0.1
328
Normal
0.1
484
Normal
0.1
364
Normal
0.1
498
Normal
0.1
362
Normal
0.1
142
Normal
0.1
686
Normal
0.1
223
Tumor
0.1
297
Tumor
0.1
412
Normal
0.1
376
Normal
0.1
714
Normal
0.1
648
Normal
0.0
494
Normal
0.0
662
Normal
0.0
672
Normal
0.0
715
Tumor
0.0
298
Normal
0.0
696
Normal
0.0
513
Tumor
0.0
685
Tumor
0.0
218
Normal
0.0
312
Normal
0.0
277
Tumor
0.0
383
Tumor
-0.1
664
Normal
-0.1
285
Tumor
-0.1
1014
Normal
-0.1
488
Normal
-0.1
228
Normal
-0.1
261
Tumor
-0.1
356
Normal
-0.1
195
Tumor
-0.2
278
Normal
-0.2
1041
Tumor
-0.2
331
Tumor
-0.2
388
Normal
-0.2
982
Normal
-0.2
213
Tumor
-0.2
386
Normal
-0.3
1016
Normal
-0.3
392
Normal
-0.3
981
Tumor
-0.3
695
Tumor
-0.3
1045
Tumor
-0.3
411
Tumor
-0.3
327
Tumor
-0.3
984
Normal
-0.3
975
Tumor
-0.3
964
Normal
-0.3
314
Normal
-0.3
517
Tumor
-0.3
132
Normal
-0.4
978
Normal
-0.4
983
Tumor
-0.4
192
Normal
-0.4
394
Normal
-0.5
136
Normal
-0.5
272
Normal
-0.5
396
Normal
-0.5
977
Tumor
-0.5
224
Normal
-0.5
332
Normal
-0.5
385
Tumor
-0.5
146
Normal
-0.5
258
Normal
-0.5
138
Normal
-0.5
967
Tumor
-0.6
777
Tumor
-0.6
868
Normal
-0.6
135
Tumor
-0.6
262
Normal
-0.7
966
Normal
-0.7
1031
Tumor
-0.7
968
Normal
-0.7
395
Tumor
-0.7
671
Tumor
-0.8
958
Normal
-0.8
212
Normal
-0.8
814
Normal
-0.8
227
Tumor
-0.9
861
Tumor
-0.9
217
Tumor
-0.9
963
Tumor
-0.9
976
Normal
-0.9
393
Tumor
-0.9
697
Tumor
-1.0
1046
Normal
-1.0
1013
Tumor
-1.0
472
Normal
-1.0
211
Tumor
-1.1
778
Normal
-1.1
642
Normal
-1.2
618
Normal
-1.2
1044
Normal
-1.2
627
Tumor
-1.2
867
Tumor
-1.3
131
Tumor
-1.3
756
Normal
-1.3
698
Normal
-1.3
873
Tumor
-1.3
957
Tumor
-1.3
448
Normal
-1.3
864
Normal
-1.3
145
Tumor
-1.3
482
Normal
-1.3
628
Normal
-1.3
477
Tumor
-1.4
478
Normal
-1.4
221
Tumor
-1.4
191
Tumor
-1.4
746
Normal
-1.4
536
Normal
-1.5
813
Tumor
-1.5
1027
Tumor
-1.5
447
Tumor
-1.5
1043
Tumor
-1.6
481
Tumor
-1.6
1021
Tumor
-1.6
1025
Tumor
-1.6
462
Normal
-1.6
471
Tumor
-1.7
114
Normal
-1.7
616
Normal
-1.7
271
Tumor
-1.7
745
Tumor
-1.7
113
Tumor
-1.8
461
Tumor
-2.0
111
Normal
-2.1
865
Tumor
-2.1
126
Normal
-2.1
112
Tumor
-2.6
617
Tumor
-2.9
526
Normal
-3.1
286
Normal
-3.3
514
Normal
-3.3
518
Normal
-3.4
516
Normal
-3.5
515
Tumor
-3.6
525
Tumor
-3.7
524
Normal
-3.8
523
Tumor
-3.9
641
Tumor
-5.3
351
Tumor
N/A
352
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
474
Normal
N/A
354
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
124
Normal
N/A
125
Tumor
N/A
128
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
937
Tumor
N/A
817
Tumor
N/A
938
Normal
N/A
818
Normal
N/A
147
Tumor
N/A
148
Normal
N/A
943
Tumor
N/A
823
Tumor
N/A
944
Normal
N/A
824
Normal
N/A
951
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
955
Tumor
N/A
956
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
723
Tumor
N/A
724
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
171
Tumor
N/A
172
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
857
Tumor
N/A
737
Tumor
N/A
858
Normal
N/A
738
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
741
Tumor
N/A
742
Normal
N/A
743
Tumor
N/A
744
Normal
N/A
877
Tumor
N/A
636
Normal
N/A
878
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
883
Tumor
N/A
884
Normal
N/A
527
Tumor
N/A
528
Normal
N/A
533
Tumor
N/A
413
Tumor
N/A
534
Normal
N/A
414
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
423
Tumor
N/A
786
Normal
N/A
424
Normal
N/A
545
Tumor
N/A
425
Tumor
N/A
546
Normal
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
431
Tumor
N/A
432
Normal
N/A
553
Tumor
N/A
433
Tumor
N/A
554
Normal
N/A
434
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
443
Tumor
N/A
564
Normal
N/A
444
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
567
Tumor
N/A
568
Normal
N/A
571
Tumor
N/A
451
Tumor
N/A
572
Normal
N/A
452
Normal
N/A
573
Tumor
N/A
574
Normal
N/A
455
Tumor
N/A
456
Normal
N/A
341
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
343
Tumor
N/A
464
Normal
N/A
344
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
