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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SMIM7 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
42.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
95.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
93.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
90.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
88.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
84.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
80.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
78.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
78.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
74.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
73.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
73.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
72.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
71.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
70.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
70.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
68.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
68.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
67.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
67.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
66.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
66.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
66.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
66.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
66.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
65.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
64.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
64.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
63.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
63.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
63.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
62.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
62.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
62.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
62.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
62.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
60.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
59.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
59.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
59.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
59.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
59.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
59.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
59.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
58.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
58.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
58.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
58.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
58.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
57.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
57.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
57.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
57.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
56.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
56.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
56.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
56.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
56.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
56.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
56.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
55.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
55.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
55.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
55.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
54.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
54.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
54.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
54.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
54.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
54.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
53.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
53.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
53.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
53.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
53.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
53.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
52.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
52.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
52.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
51.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
51.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
51.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
51.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
51.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
51.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
50.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
50.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
50.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
50.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
50.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
50.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
50.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
50.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
50.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
50.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
50.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
50.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
49.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
49.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
49.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
49.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
49.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
49.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
49.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
49.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
48.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
48.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
48.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
48.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
48.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
47.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
47.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
47.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
47.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
47.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
47.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
46.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
46.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
46.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
46.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
46.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
46.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
46.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
46.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
45.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
45.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
45.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
45.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
45.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
45.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
45.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
45.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
45.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
44.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
44.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
44.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
44.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
44.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
43.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
43.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
43.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
43.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
43.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
43.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
43.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
43.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
43.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
43.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
42.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
42.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
42.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
42.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
42.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
42.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
42.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
42.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
41.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
41.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
41.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
41.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
41.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
41.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
41.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
41.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
41.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
41.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
41.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
41.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
41.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
41.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
41.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
40.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
40.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
40.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
40.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
40.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
40.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
40.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
40.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
40.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
39.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
39.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
39.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
39.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
39.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
39.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
38.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
38.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
38.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
38.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
38.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
38.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
38.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
38.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
38.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
38.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
38.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
38.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
38.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
38.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
38.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
37.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
37.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
37.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
37.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
37.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
37.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
37.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
37.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
37.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
37.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
37.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
37.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
36.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
36.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
36.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
36.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
36.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
36.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
36.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
36.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
36.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
36.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
35.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
35.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
35.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
35.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
35.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
35.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
35.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
35.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
35.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
35.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
35.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
35.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
35.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
35.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
35.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
35.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
35.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
34.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
34.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
34.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
34.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
34.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
34.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
34.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
34.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
34.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
34.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
34.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
34.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
34.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
34.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
34.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
34.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
34.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
33.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
33.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
33.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
33.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
33.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
33.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
33.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
33.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
33.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
32.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
32.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
32.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
32.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
32.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
32.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
32.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
32.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
32.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
32.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
32.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
32.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
32.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
32.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
32.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
31.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
31.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
31.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
31.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
31.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
31.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
31.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
31.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
31.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
31.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
30.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
30.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
30.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
30.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
30.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
30.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
30.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
29.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
29.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
29.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
29.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
29.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
29.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
29.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
29.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
29.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
29.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
29.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
29.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
29.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
29.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
28.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
28.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
28.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
28.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
28.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
28.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
28.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
28.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
28.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
28.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
27.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
27.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
27.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
27.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
27.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
26.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
26.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
26.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
26.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
26.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
26.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
26.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
26.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
25.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
25.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
25.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
24.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
24.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
24.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
23.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
23.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
23.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
23.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
23.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
23.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
22.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
22.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
22.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
22.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
22.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
22.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
21.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
21.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
21.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
20.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
19.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
19.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
19.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
18.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
525
Tumor
1.2
533
Tumor
1.2
513
Tumor
1.2
1013
Tumor
1.1
863
Tumor
1.0
617
Tumor
1.0
493
Tumor
1.0
537
Tumor
1.0
965
Tumor
1.0
491
Tumor
0.9
913
Tumor
0.9
911
Tumor
0.9
527
Tumor
0.9
123
Tumor
0.9
573
Tumor
0.9
515
Tumor
0.9
427
Tumor
0.9
211
Tumor
0.9
567
Tumor
0.8
283
Tumor
0.8
925
Tumor
0.8
741
Tumor
0.8
571
Tumor
0.8
327
Tumor
0.8
967
Tumor
0.8
981
Tumor
0.8
685
Tumor
0.8
147
Tumor
0.8
823
Tumor
0.7
481
Tumor
0.7
1027
Tumor
0.7
355
Tumor
0.7
951
Tumor
0.7
487
Tumor
0.7
663
Tumor
0.7
231
Tumor
0.6
957
Tumor
0.6
937
Tumor
0.6
497
Tumor
0.6
865
Tumor
0.6
647
Tumor
0.6
857
Tumor
0.6
755
Tumor
0.6
977
Tumor
0.6
627
Tumor
0.6
461
Tumor
0.6
1015
Tumor
0.6
361
Tumor
0.5
1045
Tumor
0.5
553
Tumor
0.5
443
Tumor
0.5
483
Tumor
0.5
445
Tumor
0.5
387
Tumor
0.5
131
Tumor
0.5
494
Normal
0.5
615
Tumor
0.5
1041
Tumor
0.5
777
Tumor
0.5
391
Tumor
0.5
395
Tumor
0.5
983
Tumor
0.5
963
Tumor
0.4
351
Tumor
0.4
343
Tumor
0.4
554
Normal
0.4
451
Tumor
0.4
375
Tumor
0.4
257
Tumor
0.4
737
Tumor
0.4
953
Tumor
0.4
341
Tumor
0.4
135
Tumor
0.4
484
Normal
0.4
943
Tumor
0.4
745
Tumor
0.4
477
Tumor
0.3
851
Tumor
0.3
557
Tumor
0.3
413
Tumor
0.3
535
Tumor
0.3
545
Tumor
0.3
727
Tumor
0.3
463
Tumor
0.3
145
Tumor
0.3
814
Normal
0.3
724
Normal
0.3
861
Tumor
0.3
383
Tumor
0.3
813
Tumor
0.3
518
Normal
0.3
353
Tumor
0.3
785
Tumor
0.2
124
Normal
0.2
425
Tumor
0.2
1014
Normal
0.2
526
Normal
0.2
191
Tumor
0.2
661
Tumor
0.2
125
Tumor
0.2
423
Tumor
0.2
385
Tumor
0.2
365
Tumor
0.2
471
Tumor
0.2
492
Normal
0.2
964
Normal
0.2
488
Normal
0.2
514
Normal
0.2
721
Tumor
0.2
873
Tumor
0.2
435
Tumor
0.2
978
Normal
0.2
357
Tumor
0.2
883
Tumor
0.2
311
Tumor
0.1
313
Tumor
0.1
223
Tumor
0.1
923
Tumor
0.1
421
Tumor
0.1
112
Tumor
0.1
473
Tumor
0.1
534
Normal
0.1
968
Normal
0.1
297
Tumor
0.1
958
Normal
0.1
966
Normal
0.1
393
Tumor
0.1
917
Tumor
0.1
524
Normal
0.1
695
Tumor
0.1
285
Tumor
0.1
467
Tumor
0.1
415
Tumor
0.1
536
Normal
0.0
213
Tumor
0.0
546
Normal
0.0
922
Normal
0.0
498
Normal
0.0
161
Tumor
0.0
1021
Tumor
0.0
436
Normal
0.0
431
Tumor
0.0
944
Normal
0.0
277
Tumor
0.0
915
Tumor
0.0
171
Tumor
0.0
516
Normal
0.0
482
Normal
0.0
137
Tumor
0.0
424
Normal
0.0
984
Normal
0.0
113
Tumor
0.0
433
Tumor
0.0
187
Tumor
0.0
523
Tumor
0.0
864
Normal
0.0
142
Normal
0.0
918
Normal
0.0
697
Tumor
0.0
563
Tumor
0.0
127
Tumor
0.0
1016
Normal
0.0
517
Tumor
-0.1
456
Normal
-0.1
462
Normal
-0.1
982
Normal
-0.1
422
Normal
-0.1
528
Normal
-0.1
868
Normal
-0.1
728
Normal
-0.1
474
Normal
-0.1
665
Tumor
-0.1
1025
Tumor
-0.1
331
Tumor
-0.1
538
Normal
-0.1
572
Normal
-0.1
446
Normal
-0.1
558
Normal
-0.1
568
Normal
-0.1
912
Normal
-0.1
952
Normal
-0.1
412
Normal
-0.1
924
Normal
-0.1
975
Tumor
-0.1
955
Tumor
-0.1
1026
Normal
-0.1
564
Normal
-0.1
1044
Normal
-0.1
455
Tumor
-0.1
354
Normal
-0.1
465
Tumor
-0.1
227
Tumor
-0.2
136
Normal
-0.2
185
Tumor
-0.2
921
Tumor
-0.2
938
Normal
-0.2
141
Tumor
-0.2
926
Normal
-0.2
367
Tumor
-0.2
816
Normal
-0.2
464
Normal
-0.2
411
Tumor
-0.2
743
Tumor
-0.2
574
Normal
-0.2
472
Normal
-0.2
696
Normal
-0.2
195
Tumor
-0.2
1046
Normal
-0.2
618
Normal
-0.2
162
Normal
-0.2
428
Normal
-0.2
221
Tumor
-0.2
713
Tumor
-0.2
267
Tumor
-0.2
352
Normal
-0.2
358
Normal
-0.2
636
Normal
-0.2
824
Normal
-0.2
641
Tumor
-0.2
815
Tumor
-0.2
874
Normal
-0.2
976
Normal
-0.2
852
Normal
-0.3
148
Normal
-0.3
867
Tumor
-0.3
196
Normal
-0.3
218
Normal
-0.3
466
Normal
-0.3
447
Tumor
-0.3
1043
Tumor
-0.3
954
Normal
-0.3
916
Normal
-0.3
126
Normal
-0.3
278
Normal
-0.3
368
Normal
-0.3
111
Normal
-0.3
114
Normal
-0.3
342
Normal
-0.3
314
Normal
-0.3
1022
Normal
-0.3
956
Normal
-0.3
1032
Normal
-0.3
648
Normal
-0.3
858
Normal
-0.3
884
Normal
-0.3
448
Normal
-0.3
172
Normal
-0.3
432
Normal
-0.3
146
Normal
-0.3
376
Normal
-0.3
616
Normal
-0.3
882
Normal
-0.3
914
Normal
-0.3
132
Normal
-0.3
392
Normal
-0.3
186
Normal
-0.3
1028
Normal
-0.3
362
Normal
-0.3
738
Normal
-0.3
1042
Normal
-0.3
756
Normal
-0.3
786
Normal
-0.3
778
Normal
-0.4
746
Normal
-0.4
356
Normal
-0.4
396
Normal
-0.4
862
Normal
-0.4
128
Normal
-0.4
426
Normal
-0.4
628
Normal
-0.4
817
Tumor
-0.4
232
Normal
-0.4
217
Tumor
-0.4
312
Normal
-0.4
742
Normal
-0.4
878
Normal
-0.4
364
Normal
-0.4
414
Normal
-0.4
468
Normal
-0.4
212
Normal
-0.4
138
Normal
-0.4
298
Normal
-0.4
686
Normal
-0.4
344
Normal
-0.4
416
Normal
-0.4
723
Tumor
-0.4
384
Normal
-0.4
188
Normal
-0.4
328
Normal
-0.4
881
Tumor
-0.4
635
Tumor
-0.4
284
Normal
-0.4
698
Normal
-0.4
664
Normal
-0.5
444
Normal
-0.5
666
Normal
-0.5
452
Normal
-0.5
714
Normal
-0.5
642
Normal
-0.5
877
Tumor
-0.5
866
Normal
-0.5
818
Normal
-0.5
214
Normal
-0.5
222
Normal
-0.5
386
Normal
-0.5
286
Normal
-0.5
388
Normal
-0.5
332
Normal
-0.5
394
Normal
-0.5
478
Normal
-0.5
672
Normal
-0.5
662
Normal
-0.5
716
Normal
-0.5
744
Normal
-0.5
366
Normal
-0.5
722
Normal
-0.6
1031
Tumor
-0.6
671
Tumor
-0.6
434
Normal
-0.6
228
Normal
-0.6
261
Tumor
-0.6
224
Normal
-0.7
271
Tumor
-0.7
268
Normal
-0.7
258
Normal
-0.7
192
Normal
-0.8
715
Tumor
-0.9
262
Normal
-0.9
363
Tumor
-0.9
272
Normal
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
