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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NAXD is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
98.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
76.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
76.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
75.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
73.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
67.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
65.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
63.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
56.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
55.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
51.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
51.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
51.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
50.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
48.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
48.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
48.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
47.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
47.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
47.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
46.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
46.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
46.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
45.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
45.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
44.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
44.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
43.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
43.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
43.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
43.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
43.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
43.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
42.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
42.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
41.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
41.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
39.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
38.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
38.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
38.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
38.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
38.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
38.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
38.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
37.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
37.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
37.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
36.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
36.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
36.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
36.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
35.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
35.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
35.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
34.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
34.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
34.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
34.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
33.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
33.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
33.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
33.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
33.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
33.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
33.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
33.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
32.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
32.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
32.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
32.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
32.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
32.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
32.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
31.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
31.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
31.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
31.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
31.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
30.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
30.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
30.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
30.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
30.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
29.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
29.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
29.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
29.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
29.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
29.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
29.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
29.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
28.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
28.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
28.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
28.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
28.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
28.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
28.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
28.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
28.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
28.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
28.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
28.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
28.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
27.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
27.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
27.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
27.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
27.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
27.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
27.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
27.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
27.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
27.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
26.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
26.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
26.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
26.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
26.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
26.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
26.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
26.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
26.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
26.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
26.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
26.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
26.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
26.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
26.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
26.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
26.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
25.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
25.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
25.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
25.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
25.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
25.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
25.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
25.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
25.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
25.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
25.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
25.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
24.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
24.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
24.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
24.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
24.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
24.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
24.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
24.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
24.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
24.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
23.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
23.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
23.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
23.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
23.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
23.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
23.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
23.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
23.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
23.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
23.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
22.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
22.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
22.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
22.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
22.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
22.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
22.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
22.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
22.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
22.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
22.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
22.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
22.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
22.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
22.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
21.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
21.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
21.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
21.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
21.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
21.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
21.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
21.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
21.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
21.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
21.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
20.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
20.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
20.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
20.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
20.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
20.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
20.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
20.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
20.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
20.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
20.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
20.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
20.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
20.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
20.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
20.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
20.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
20.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
19.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
19.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
19.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
19.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
19.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
19.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
19.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
19.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
19.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
19.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
19.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
19.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
19.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
19.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
19.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
18.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
18.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
18.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
18.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
18.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
18.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
18.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
18.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
17.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
17.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
17.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
17.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
17.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
17.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
17.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
17.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
16.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
16.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
16.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
16.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
16.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
16.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
16.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
16.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
16.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
16.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
16.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
16.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
16.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
16.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
15.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
15.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
15.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
15.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
15.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
15.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
15.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
15.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
14.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
14.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
14.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
14.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
14.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
14.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
13.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
13.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
13.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
13.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
13.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
13.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
12.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
12.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
12.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
12.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
12.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
12.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
11.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
11.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
11.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
11.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
11.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
10.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
135
Tumor
1.5
571
Tumor
1.1
695
Tumor
1.0
627
Tumor
0.7
863
Tumor
0.7
698
Normal
0.7
981
Tumor
0.6
132
Normal
0.6
128
Normal
0.6
741
Tumor
0.6
924
Normal
0.6
955
Tumor
0.5
744
Normal
0.5
314
Normal
0.5
546
Normal
0.5
882
Normal
0.5
746
Normal
0.5
214
Normal
0.5
952
Normal
0.5
862
Normal
0.5
114
Normal
0.5
342
Normal
0.5
298
Normal
0.5
111
Normal
0.5
448
Normal
0.5
344
Normal
0.5
534
Normal
0.5
358
Normal
0.4
436
Normal
0.4
713
Tumor
0.4
196
Normal
0.4
278
Normal
0.4
426
Normal
0.4
148
Normal
0.4
1026
Normal
0.4
564
Normal
0.4
618
Normal
0.4
878
Normal
0.4
356
Normal
0.4
261
Tumor
0.4
554
Normal
0.4
738
Normal
0.4
258
Normal
0.4
452
Normal
0.4
714
Normal
0.4
354
Normal
0.4
923
Tumor
0.4
722
Normal
0.4
648
Normal
0.4
474
Normal
0.4
864
Normal
0.4
466
Normal
0.4
1027
Tumor
0.4
824
Normal
0.4
186
Normal
0.4
312
Normal
0.4
1032
Normal
0.3
756
Normal
0.3
742
Normal
0.3
538
Normal
0.3
515
Tumor
0.3
332
Normal
0.3
222
Normal
0.3
472
Normal
0.3
136
Normal
0.3
616
Normal
0.3
484
Normal
0.3
1046
Normal
0.3
568
Normal
0.3
172
Normal
0.3
1022
Normal
0.3
858
Normal
0.3
488
Normal
0.3
146
Normal
0.3
482
Normal
0.3
816
Normal
0.3
464
Normal
0.3
956
Normal
0.3
142
Normal
0.3
778
Normal
0.3
468
Normal
0.3
414
Normal
0.3
743
Tumor
0.3
518
Normal
0.3
572
Normal
0.3
914
Normal
0.3
866
Normal
0.3
874
Normal
0.3
228
Normal
0.3
272
Normal
0.3
411
Tumor
0.3
456
Normal
0.3
964
Normal
0.3
162
Normal
0.3
424
Normal
0.3
642
Normal
0.3
984
Normal
0.3
328
Normal
0.3
636
Normal
0.3
728
Normal
0.3
212
Normal
0.3
628
Normal
0.3
664
Normal
0.3
1014
Normal
0.3
138
Normal
0.2
446
Normal
0.2
422
Normal
0.2
218
Normal
0.2
386
Normal
0.2
672
Normal
0.2
662
Normal
0.2
723
Tumor
0.2
686
Normal
0.2
968
Normal
0.2
462
Normal
0.2
416
Normal
0.2
494
Normal
0.2
696
Normal
0.2
976
Normal
0.2
137
Tumor
0.2
364
Normal
0.2
912
Normal
0.2
982
Normal
0.2
516
Normal
0.2
232
Normal
0.2
1028
Normal
0.2
352
Normal
0.2
412
Normal
0.2
922
Normal
0.2
966
Normal
0.2
1043
Tumor
0.2
574
Normal
0.2
376
Normal
0.2
944
Normal
0.2
697
Tumor
0.2
938
Normal
0.2
716
Normal
0.2
852
Normal
0.2
262
Normal
0.2
868
Normal
0.2
528
Normal
0.2
394
Normal
0.2
786
Normal
0.2
911
Tumor
0.2
1016
Normal
0.2
615
Tumor
0.2
126
Normal
0.1
558
Normal
0.1
1042
Normal
0.1
432
Normal
0.1
286
Normal
0.1
396
Normal
0.1
327
Tumor
0.1
492
Normal
0.1
124
Normal
0.1
1044
Normal
0.1
362
Normal
0.1
423
Tumor
0.1
915
Tumor
0.1
366
Normal
0.1
368
Normal
0.1
277
Tumor
0.1
513
Tumor
0.1
188
Normal
0.1
526
Normal
0.1
113
Tumor
0.1
785
Tumor
0.1
445
Tumor
0.1
361
Tumor
0.1
884
Normal
0.1
958
Normal
0.1
388
Normal
0.1
918
Normal
0.1
954
Normal
0.0
392
Normal
0.0
227
Tumor
0.0
666
Normal
0.0
284
Normal
0.0
271
Tumor
0.0
192
Normal
0.0
481
Tumor
0.0
641
Tumor
0.0
428
Normal
0.0
926
Normal
0.0
195
Tumor
0.0
818
Normal
0.0
498
Normal
0.0
478
Normal
0.0
916
Normal
0.0
755
Tumor
0.0
737
Tumor
0.0
435
Tumor
0.0
635
Tumor
-0.1
112
Tumor
-0.1
536
Normal
-0.1
384
Normal
-0.1
1025
Tumor
-0.1
434
Normal
-0.1
514
Normal
-0.1
224
Normal
-0.1
617
Tumor
-0.1
473
Tumor
-0.1
777
Tumor
-0.1
873
Tumor
-0.1
867
Tumor
-0.1
444
Normal
-0.1
877
Tumor
-0.2
268
Normal
-0.2
363
Tumor
-0.2
721
Tumor
-0.2
365
Tumor
-0.2
145
Tumor
-0.2
141
Tumor
-0.2
353
Tumor
-0.2
978
Normal
-0.2
1045
Tumor
-0.2
131
Tumor
-0.2
921
Tumor
-0.2
443
Tumor
-0.2
524
Normal
-0.2
1015
Tumor
-0.2
127
Tumor
-0.2
857
Tumor
-0.2
663
Tumor
-0.2
967
Tumor
-0.2
393
Tumor
-0.3
553
Tumor
-0.3
963
Tumor
-0.3
341
Tumor
-0.3
415
Tumor
-0.3
471
Tumor
-0.3
727
Tumor
-0.3
355
Tumor
-0.3
461
Tumor
-0.3
257
Tumor
-0.3
433
Tumor
-0.3
517
Tumor
-0.3
217
Tumor
-0.3
823
Tumor
-0.4
745
Tumor
-0.4
297
Tumor
-0.4
185
Tumor
-0.4
487
Tumor
-0.4
483
Tumor
-0.4
883
Tumor
-0.4
221
Tumor
-0.4
267
Tumor
-0.4
477
Tumor
-0.4
147
Tumor
-0.4
685
Tumor
-0.4
925
Tumor
-0.4
491
Tumor
-0.4
1031
Tumor
-0.4
715
Tumor
-0.4
563
Tumor
-0.4
913
Tumor
-0.4
465
Tumor
-0.5
861
Tumor
-0.5
1041
Tumor
-0.5
975
Tumor
-0.5
455
Tumor
-0.5
567
Tumor
-0.5
557
Tumor
-0.5
231
Tumor
-0.5
161
Tumor
-0.5
421
Tumor
-0.6
451
Tumor
-0.6
223
Tumor
-0.6
467
Tumor
-0.6
331
Tumor
-0.6
447
Tumor
-0.6
375
Tumor
-0.6
523
Tumor
-0.6
953
Tumor
-0.6
191
Tumor
-0.6
311
Tumor
-0.6
865
Tumor
-0.7
525
Tumor
-0.7
395
Tumor
-0.7
357
Tumor
-0.7
187
Tumor
-0.7
815
Tumor
-0.7
171
Tumor
-0.7
951
Tumor
-0.7
1021
Tumor
-0.7
497
Tumor
-0.7
535
Tumor
-0.7
817
Tumor
-0.8
545
Tumor
-0.8
431
Tumor
-0.8
493
Tumor
-0.8
671
Tumor
-0.8
427
Tumor
-0.8
313
Tumor
-0.8
813
Tumor
-0.8
881
Tumor
-0.8
123
Tumor
-0.8
957
Tumor
-0.9
943
Tumor
-0.9
814
Normal
-0.9
367
Tumor
-0.9
1013
Tumor
-0.9
917
Tumor
-0.9
851
Tumor
-0.9
425
Tumor
-0.9
213
Tumor
-0.9
977
Tumor
-0.9
351
Tumor
-0.9
665
Tumor
-0.9
965
Tumor
-0.9
937
Tumor
-1.0
383
Tumor
-1.0
343
Tumor
-1.0
391
Tumor
-1.0
537
Tumor
-1.0
125
Tumor
-1.0
413
Tumor
-1.1
533
Tumor
-1.1
983
Tumor
-1.1
527
Tumor
-1.1
647
Tumor
-1.1
211
Tumor
-1.1
573
Tumor
-1.2
385
Tumor
-1.3
285
Tumor
-1.3
463
Tumor
-1.3
387
Tumor
-1.3
661
Tumor
-1.4
724
Normal
-1.4
283
Tumor
-1.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
