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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TAX1BP3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
42.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
324.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
291.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
276.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
260.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
238.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
222.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
209.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
196.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
196.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
193.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
191.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
185.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
181.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
153.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
152.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
144.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
139.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
136.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
132.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
127.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
127.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
121.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
112.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
98.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
98.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
98.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
98.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
98.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
96.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
95.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
93.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
93.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
92.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
90.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
90.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
89.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
89.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
88.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
86.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
85.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
85.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
81.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
80.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
80.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
80.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
80.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
79.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
76.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
74.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
71.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
71.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
71.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
71.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
69.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
68.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
67.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
65.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
65.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
64.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
60.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
59.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
59.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
59.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
59.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
58.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
57.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
56.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
55.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
55.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
52.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
52.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
51.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
51.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
51.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
50.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
50.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
50.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
49.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
49.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
49.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
49.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
49.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
49.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
48.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
48.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
48.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
48.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
48.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
47.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
46.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
46.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
46.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
46.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
45.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
45.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
45.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
44.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
44.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
44.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
44.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
44.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
43.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
43.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
43.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
43.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
43.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
43.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
42.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
41.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
41.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
41.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
41.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
41.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
41.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
41.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
40.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
40.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
40.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
40.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
39.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
39.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
39.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
38.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
38.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
38.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
38.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
38.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
38.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
38.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
38.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
37.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
37.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
37.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
37.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
37.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
37.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
36.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
36.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
36.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
36.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
36.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
36.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
36.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
35.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
35.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
35.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
35.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
35.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
34.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
34.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
34.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
34.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
34.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
33.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
33.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
33.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
33.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
33.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
33.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
32.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
32.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
32.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
32.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
32.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
31.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
31.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
31.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
31.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
30.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
30.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
30.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
30.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
29.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
29.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
29.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
29.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
29.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
29.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
28.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
28.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
28.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
28.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
28.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
28.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
27.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
27.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
27.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
27.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
27.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
26.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
26.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
26.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
26.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
25.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
25.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
25.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
25.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
25.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
25.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
24.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
24.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
24.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
24.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
24.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
24.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
24.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
23.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
23.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
23.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
23.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
23.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
23.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
23.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
23.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
22.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
22.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
22.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
22.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
22.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
22.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
21.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
21.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
21.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
21.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
20.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
20.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
20.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
20.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
20.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
19.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
19.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
19.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
19.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
18.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
18.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
18.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
18.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
18.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
18.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
18.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
18.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
18.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
18.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
18.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
18.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
18.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
17.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
17.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
17.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
17.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
17.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
17.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
17.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
17.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
17.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
17.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
17.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
17.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
17.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
17.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
16.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
16.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
16.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
16.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
16.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
16.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
16.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
16.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
16.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
16.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
15.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
15.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
15.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
15.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
15.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
15.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
15.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
14.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
14.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
14.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
13.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
13.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
13.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
13.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
13.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
13.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
12.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
12.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
12.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
12.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
12.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
11.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
11.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
11.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
11.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
10.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
9.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TAX1BP3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
29.9
Number of samples
231
Samples
Sample
Description
TPM
DO45305
0 years, male, NA, stage:4, alive, 300 days
250.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
205.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
192.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
173.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
166.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
151.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
150.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
138.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
108.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
106.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
93.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
91.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
89.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
88.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
87.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
78.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
77.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
77.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
75.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
74.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
70.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
70.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
70.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
62.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
59.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
58.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
58.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
58.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
55.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
54.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
54.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
53.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
48.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
48.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
48.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
47.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
46.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
45.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
44.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
42.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
41.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
40.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
40.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
40.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
39.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
39.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
39.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
39.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
38.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
38.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
38.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
37.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
36.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
36.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
35.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
35.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
35.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
34.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
34.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
32.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
32.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
32.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
32.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
31.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
31.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
31.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
30.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
30.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
30.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
29.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
29.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
28.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
28.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
28.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
28.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
27.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
27.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
27.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
27.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
26.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
26.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
25.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
25.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
25.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
24.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
24.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
24.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
24.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
24.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
23.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
23.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
23.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
22.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
21.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
21.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
21.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
21.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
20.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
20.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
20.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
19.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
19.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
19.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
19.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
19.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
19.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
19.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
19.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
18.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
18.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
18.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
18.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
18.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
18.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
18.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
17.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
17.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
17.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
17.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
17.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
16.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
16.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
16.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
16.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
16.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
15.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
15.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
15.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
14.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
14.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
14.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
13.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
13.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
13.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
12.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
6.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
817
Tumor
1.7
131
Tumor
1.5
641
Tumor
1.3
221
Tumor
1.3
715
Tumor
1.1
478
Normal
1.1
447
Tumor
1.0
444
Normal
1.0
545
Tumor
1.0
455
Tumor
1.0
498
Normal
1.0
917
Tumor
0.9
877
Tumor
0.9
975
Tumor
0.9
395
Tumor
0.9
492
Normal
0.9
881
Tumor
0.8
536
Normal
0.8
553
Tumor
0.8
557
Tumor
0.8
311
Tumor
0.7
461
Tumor
0.7
671
Tumor
0.7
192
Normal
0.7
814
Normal
0.7
467
Tumor
0.7
451
Tumor
0.7
943
Tumor
0.7
268
Normal
0.7
1031
Tumor
0.7
713
Tumor
0.6
538
Normal
0.6
916
Normal
0.6
135
Tumor
0.6
958
Normal
0.6
385
Tumor
0.6
271
Tumor
0.6
363
Tumor
0.6
283
Tumor
0.6
413
Tumor
0.6
921
Tumor
0.6
473
Tumor
0.5
721
Tumor
0.5
563
Tumor
0.5
976
Normal
0.5
223
Tumor
0.5
185
Tumor
0.4
375
Tumor
0.4
963
Tumor
0.4
224
Normal
0.4
384
Normal
0.4
857
Tumor
0.4
421
Tumor
0.4
491
Tumor
0.4
297
Tumor
0.4
743
Tumor
0.4
383
Tumor
0.4
471
Tumor
0.3
284
Normal
0.3
145
Tumor
0.3
954
Normal
0.3
497
Tumor
0.3
924
Normal
0.3
516
Normal
0.3
343
Tumor
0.3
852
Normal
0.3
823
Tumor
0.3
851
Tumor
0.3
1028
Normal
0.3
126
Normal
0.3
191
Tumor
0.3
697
Tumor
0.3
956
Normal
0.3
344
Normal
0.3
868
Normal
0.3
685
Tumor
0.3
493
Tumor
0.3
188
Normal
0.2
285
Tumor
0.2
386
Normal
0.2
434
Normal
0.2
535
Tumor
0.2
874
Normal
0.2
978
Normal
0.2
312
Normal
0.2
415
Tumor
0.2
878
Normal
0.2
785
Tumor
0.2
813
Tumor
0.2
952
Normal
0.2
1044
Normal
0.2
392
Normal
0.2
968
Normal
0.2
364
Normal
0.2
463
Tumor
0.2
558
Normal
0.2
524
Normal
0.2
716
Normal
0.2
982
Normal
0.2
816
Normal
0.2
448
Normal
0.2
416
Normal
0.2
125
Tumor
0.2
672
Normal
0.2
412
Normal
0.2
525
Tumor
0.2
483
Tumor
0.2
951
Tumor
0.2
474
Normal
0.1
124
Normal
0.1
355
Tumor
0.1
863
Tumor
0.1
212
Normal
0.1
146
Normal
0.1
327
Tumor
0.1
864
Normal
0.1
136
Normal
0.1
387
Tumor
0.1
466
Normal
0.1
138
Normal
0.1
1045
Tumor
0.1
923
Tumor
0.1
433
Tumor
0.1
365
Tumor
0.1
425
Tumor
0.1
696
Normal
0.1
227
Tumor
0.1
918
Normal
0.1
786
Normal
0.1
427
Tumor
0.1
354
Normal
0.1
957
Tumor
0.1
1041
Tumor
0.1
554
Normal
0.1
818
Normal
0.1
938
Normal
0.1
1032
Normal
0.1
362
Normal
0.0
494
Normal
0.0
464
Normal
0.0
824
Normal
0.0
432
Normal
0.0
468
Normal
0.0
368
Normal
0.0
964
Normal
0.0
1042
Normal
0.0
195
Tumor
0.0
1016
Normal
0.0
1043
Tumor
0.0
528
Normal
0.0
278
Normal
0.0
328
Normal
0.0
356
Normal
0.0
714
Normal
0.0
228
Normal
0.0
913
Tumor
0.0
1046
Normal
0.0
187
Tumor
0.0
883
Tumor
0.0
686
Normal
0.0
984
Normal
0.0
211
Tumor
0.0
424
Normal
0.0
352
Normal
0.0
514
Normal
0.0
723
Tumor
0.0
884
Normal
0.0
456
Normal
0.0
331
Tumor
0.0
262
Normal
-0.1
722
Normal
-0.1
213
Tumor
-0.1
698
Normal
-0.1
572
Normal
-0.1
286
Normal
-0.1
926
Normal
-0.1
1021
Tumor
-0.1
977
Tumor
-0.1
214
Normal
-0.1
944
Normal
-0.1
1015
Tumor
-0.1
142
Normal
-0.1
922
Normal
-0.1
488
Normal
-0.1
665
Tumor
-0.1
332
Normal
-0.1
873
Tumor
-0.1
1014
Normal
-0.1
617
Tumor
-0.1
261
Tumor
-0.1
1022
Normal
-0.1
422
Normal
-0.1
574
Normal
-0.1
914
Normal
-0.1
148
Normal
-0.1
232
Normal
-0.1
546
Normal
-0.1
666
Normal
-0.1
526
Normal
-0.1
573
Tumor
-0.1
132
Normal
-0.1
778
Normal
-0.1
937
Tumor
-0.1
728
Normal
-0.1
966
Normal
-0.1
866
Normal
-0.1
955
Tumor
-0.1
642
Normal
-0.1
376
Normal
-0.2
534
Normal
-0.2
394
Normal
-0.2
744
Normal
-0.2
217
Tumor
-0.2
272
Normal
-0.2
277
Tumor
-0.2
1025
Tumor
-0.2
861
Tumor
-0.2
351
Tumor
-0.2
428
Normal
-0.2
925
Tumor
-0.2
882
Normal
-0.2
662
Normal
-0.2
162
Normal
-0.2
446
Normal
-0.2
342
Normal
-0.2
366
Normal
-0.2
862
Normal
-0.2
515
Tumor
-0.2
472
Normal
-0.2
137
Tumor
-0.2
865
Tumor
-0.2
912
Normal
-0.2
746
Normal
-0.2
388
Normal
-0.2
858
Normal
-0.2
518
Normal
-0.2
141
Tumor
-0.2
664
Normal
-0.2
111
Normal
-0.2
967
Tumor
-0.2
627
Tumor
-0.3
755
Tumor
-0.3
484
Normal
-0.3
815
Tumor
-0.3
867
Tumor
-0.3
1026
Normal
-0.3
738
Normal
-0.3
231
Tumor
-0.3
314
Normal
-0.3
313
Tumor
-0.3
513
Tumor
-0.3
161
Tumor
-0.3
396
Normal
-0.3
218
Normal
-0.3
186
Normal
-0.3
663
Tumor
-0.3
128
Normal
-0.3
616
Normal
-0.3
915
Tumor
-0.3
452
Normal
-0.3
258
Normal
-0.3
756
Normal
-0.3
981
Tumor
-0.3
298
Normal
-0.3
527
Tumor
-0.3
564
Normal
-0.3
436
Normal
-0.4
983
Tumor
-0.4
367
Tumor
-0.4
147
Tumor
-0.4
114
Normal
-0.4
628
Normal
-0.4
172
Normal
-0.4
737
Tumor
-0.4
222
Normal
-0.4
257
Tumor
-0.4
426
Normal
-0.4
537
Tumor
-0.4
341
Tumor
-0.4
196
Normal
-0.4
358
Normal
-0.4
113
Tumor
-0.4
745
Tumor
-0.4
648
Normal
-0.5
618
Normal
-0.5
636
Normal
-0.5
477
Tumor
-0.5
361
Tumor
-0.5
965
Tumor
-0.5
393
Tumor
-0.5
911
Tumor
-0.5
727
Tumor
-0.5
533
Tumor
-0.5
742
Normal
-0.5
953
Tumor
-0.5
267
Tumor
-0.5
661
Tumor
-0.5
777
Tumor
-0.5
353
Tumor
-0.5
724
Normal
-0.6
647
Tumor
-0.6
414
Normal
-0.6
568
Normal
-0.6
171
Tumor
-0.6
1027
Tumor
-0.6
465
Tumor
-0.6
443
Tumor
-0.6
462
Normal
-0.6
127
Tumor
-0.6
517
Tumor
-0.6
1013
Tumor
-0.6
391
Tumor
-0.6
482
Normal
-0.6
445
Tumor
-0.7
423
Tumor
-0.7
411
Tumor
-0.7
431
Tumor
-0.7
695
Tumor
-0.7
481
Tumor
-0.8
112
Tumor
-0.8
741
Tumor
-0.8
123
Tumor
-0.8
571
Tumor
-0.8
567
Tumor
-0.8
615
Tumor
-0.8
357
Tumor
-0.8
635
Tumor
-0.9
523
Tumor
-1.0
435
Tumor
-1.1
487
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
