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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
2.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
2.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
2.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
2.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
2.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
2.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
2.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
2.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
2.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
2.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
2.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
2.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
2.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
2.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
2.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
1.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
1.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
1.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
1.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
1.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
1.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
1.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
1.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
1.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
1.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
1.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
1.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
1.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
1.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
1.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
1.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
1.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
1.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
1.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
1.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
1.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
1.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
1.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
1.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
1.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
1.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
1.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
1.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
1.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
1.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
1.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
1.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
1.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
1.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
1.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
1.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
1.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
1.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
1.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
1.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
1.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
1.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
1.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
1.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
1.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
1.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
1.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
1.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
1.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
1.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
1.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
1.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
1.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
0.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ITGA1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.7
Number of samples
231
Samples
Sample
Description
TPM
DO23521
0 years, male, NA, stage:3, alive, 1110 days
109.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
93.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
67.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
59.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
57.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
55.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
52.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
50.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
50.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
46.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
42.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
42.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
41.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
41.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
39.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
38.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
38.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
38.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
38.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
37.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
36.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
36.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
35.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
35.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
35.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
33.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
33.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
33.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
33.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
32.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
32.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
32.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
31.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
31.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
30.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
30.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
29.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
29.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
29.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
29.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
29.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
29.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
28.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
28.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
28.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
28.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
27.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
27.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
27.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
27.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
27.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
26.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
26.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
25.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
25.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
25.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
25.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
25.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
24.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
24.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
24.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
24.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
24.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
24.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
24.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
24.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
24.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
24.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
23.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
23.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
23.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
23.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
23.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
23.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
23.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
22.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
22.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
22.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
22.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
21.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
20.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
20.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
20.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
19.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
19.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
19.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
19.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
19.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
19.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
19.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
19.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
18.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
18.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
18.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
18.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
18.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
18.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
18.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
18.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
18.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
18.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
17.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
17.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
17.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
17.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
17.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
17.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
17.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
17.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
17.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
16.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
16.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
16.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
16.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
16.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
15.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
15.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
15.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
15.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
15.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
14.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
14.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
14.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
13.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
13.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
11.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
11.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
10.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
10.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
9.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
7.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
3.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
2.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
2.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
1.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
285
Tumor
0.9
497
Tumor
0.8
538
Normal
0.8
737
Tumor
0.7
192
Normal
0.7
878
Normal
0.7
813
Tumor
0.7
517
Tumor
0.6
975
Tumor
0.6
742
Normal
0.6
523
Tumor
0.6
344
Normal
0.6
744
Normal
0.6
1043
Tumor
0.6
412
Normal
0.6
498
Normal
0.6
698
Normal
0.6
924
Normal
0.6
448
Normal
0.5
952
Normal
0.5
746
Normal
0.5
938
Normal
0.5
672
Normal
0.5
982
Normal
0.5
984
Normal
0.5
958
Normal
0.5
478
Normal
0.5
554
Normal
0.5
364
Normal
0.5
356
Normal
0.5
553
Tumor
0.5
1032
Normal
0.5
778
Normal
0.5
186
Normal
0.5
922
Normal
0.5
1028
Normal
0.4
1044
Normal
0.4
976
Normal
0.4
536
Normal
0.4
534
Normal
0.4
342
Normal
0.4
1022
Normal
0.4
1046
Normal
0.4
816
Normal
0.4
862
Normal
0.4
954
Normal
0.4
472
Normal
0.4
618
Normal
0.4
568
Normal
0.4
132
Normal
0.4
422
Normal
0.4
376
Normal
0.4
426
Normal
0.4
817
Tumor
0.4
228
Normal
0.4
723
Tumor
0.4
786
Normal
0.4
1014
Normal
0.4
332
Normal
0.4
546
Normal
0.4
528
Normal
0.4
824
Normal
0.4
968
Normal
0.4
196
Normal
0.4
636
Normal
0.4
852
Normal
0.4
142
Normal
0.4
518
Normal
0.4
866
Normal
0.4
488
Normal
0.3
314
Normal
0.3
124
Normal
0.3
912
Normal
0.3
572
Normal
0.3
916
Normal
0.3
162
Normal
0.3
462
Normal
0.3
966
Normal
0.3
918
Normal
0.3
818
Normal
0.3
716
Normal
0.3
414
Normal
0.3
425
Tumor
0.3
944
Normal
0.3
212
Normal
0.3
126
Normal
0.3
864
Normal
0.3
1026
Normal
0.3
354
Normal
0.3
284
Normal
0.3
466
Normal
0.3
214
Normal
0.3
436
Normal
0.3
416
Normal
0.3
482
Normal
0.3
494
Normal
0.3
526
Normal
0.3
388
Normal
0.3
686
Normal
0.3
666
Normal
0.3
738
Normal
0.3
514
Normal
0.3
664
Normal
0.3
298
Normal
0.3
868
Normal
0.3
642
Normal
0.2
415
Tumor
0.2
516
Normal
0.2
1042
Normal
0.2
286
Normal
0.2
756
Normal
0.2
363
Tumor
0.2
696
Normal
0.2
1025
Tumor
0.2
967
Tumor
0.2
172
Normal
0.2
874
Normal
0.2
148
Normal
0.2
815
Tumor
0.2
728
Normal
0.2
468
Normal
0.2
136
Normal
0.2
146
Normal
0.2
421
Tumor
0.2
524
Normal
0.2
456
Normal
0.2
394
Normal
0.2
1016
Normal
0.2
867
Tumor
0.2
128
Normal
0.2
428
Normal
0.2
956
Normal
0.2
368
Normal
0.2
432
Normal
0.2
424
Normal
0.2
272
Normal
0.2
352
Normal
0.2
362
Normal
0.2
882
Normal
0.2
138
Normal
0.2
1031
Tumor
0.2
943
Tumor
0.2
446
Normal
0.2
515
Tumor
0.2
358
Normal
0.2
628
Normal
0.2
884
Normal
0.2
981
Tumor
0.2
858
Normal
0.2
328
Normal
0.2
484
Normal
0.2
111
Normal
0.2
481
Tumor
0.2
915
Tumor
0.1
278
Normal
0.1
964
Normal
0.1
224
Normal
0.1
978
Normal
0.1
185
Tumor
0.1
261
Tumor
0.1
431
Tumor
0.1
392
Normal
0.1
574
Normal
0.1
384
Normal
0.1
527
Tumor
0.1
461
Tumor
0.1
464
Normal
0.1
434
Normal
0.1
564
Normal
0.1
648
Normal
0.1
413
Tumor
0.1
452
Normal
0.1
386
Normal
0.1
444
Normal
0.1
955
Tumor
0.1
814
Normal
0.1
232
Normal
0.1
911
Tumor
0.1
914
Normal
0.1
268
Normal
0.1
188
Normal
0.1
218
Normal
0.1
222
Normal
0.1
366
Normal
0.1
695
Tumor
0.1
135
Tumor
0.1
977
Tumor
0.1
662
Normal
0.1
473
Tumor
0.0
435
Tumor
0.0
258
Normal
0.0
396
Normal
0.0
223
Tumor
0.0
492
Normal
0.0
963
Tumor
0.0
277
Tumor
0.0
545
Tumor
0.0
823
Tumor
0.0
114
Normal
0.0
714
Normal
0.0
616
Normal
0.0
312
Normal
0.0
722
Normal
0.0
926
Normal
0.0
433
Tumor
0.0
715
Tumor
0.0
161
Tumor
0.0
447
Tumor
0.0
563
Tumor
0.0
721
Tumor
-0.1
455
Tumor
-0.1
262
Normal
-0.1
191
Tumor
-0.1
187
Tumor
-0.1
617
Tumor
-0.1
697
Tumor
-0.1
141
Tumor
-0.1
923
Tumor
-0.1
558
Normal
-0.1
857
Tumor
-0.1
387
Tumor
-0.1
863
Tumor
-0.1
474
Normal
-0.1
487
Tumor
-0.1
227
Tumor
-0.1
195
Tumor
-0.1
137
Tumor
-0.2
125
Tumor
-0.2
355
Tumor
-0.2
983
Tumor
-0.2
477
Tumor
-0.2
465
Tumor
-0.2
533
Tumor
-0.2
951
Tumor
-0.2
423
Tumor
-0.2
785
Tumor
-0.2
471
Tumor
-0.2
755
Tumor
-0.2
917
Tumor
-0.2
615
Tumor
-0.2
383
Tumor
-0.2
881
Tumor
-0.2
341
Tumor
-0.2
445
Tumor
-0.3
297
Tumor
-0.3
671
Tumor
-0.3
467
Tumor
-0.3
913
Tumor
-0.3
353
Tumor
-0.3
1045
Tumor
-0.3
1013
Tumor
-0.3
873
Tumor
-0.3
493
Tumor
-0.3
361
Tumor
-0.3
217
Tumor
-0.3
343
Tumor
-0.3
777
Tumor
-0.3
513
Tumor
-0.3
327
Tumor
-0.3
713
Tumor
-0.3
127
Tumor
-0.3
213
Tumor
-0.3
145
Tumor
-0.4
883
Tumor
-0.4
1041
Tumor
-0.4
483
Tumor
-0.4
271
Tumor
-0.4
131
Tumor
-0.4
427
Tumor
-0.4
877
Tumor
-0.4
627
Tumor
-0.4
641
Tumor
-0.4
463
Tumor
-0.4
724
Normal
-0.4
391
Tumor
-0.4
411
Tumor
-0.4
365
Tumor
-0.5
535
Tumor
-0.5
1015
Tumor
-0.5
331
Tumor
-0.5
311
Tumor
-0.5
147
Tumor
-0.5
851
Tumor
-0.5
861
Tumor
-0.5
921
Tumor
-0.5
965
Tumor
-0.6
745
Tumor
-0.6
525
Tumor
-0.6
443
Tumor
-0.6
491
Tumor
-0.6
937
Tumor
-0.6
537
Tumor
-0.6
741
Tumor
-0.6
221
Tumor
-0.6
727
Tumor
-0.6
257
Tumor
-0.6
661
Tumor
-0.6
743
Tumor
-0.6
112
Tumor
-0.6
665
Tumor
-0.7
357
Tumor
-0.7
685
Tumor
-0.7
123
Tumor
-0.7
385
Tumor
-0.8
267
Tumor
-0.8
635
Tumor
-0.8
1021
Tumor
-0.8
113
Tumor
-0.8
1027
Tumor
-0.8
571
Tumor
-0.8
567
Tumor
-0.8
367
Tumor
-0.8
313
Tumor
-0.9
211
Tumor
-0.9
171
Tumor
-0.9
953
Tumor
-0.9
647
Tumor
-0.9
925
Tumor
-0.9
663
Tumor
-0.9
557
Tumor
-0.9
231
Tumor
-1.0
451
Tumor
-1.0
395
Tumor
-1.0
957
Tumor
-1.0
351
Tumor
-1.1
865
Tumor
-1.1
573
Tumor
-1.1
375
Tumor
-1.2
283
Tumor
-1.2
393
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
