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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CSNK1E is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
130.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
84.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
80.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
79.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
75.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
74.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
73.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
64.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
60.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
60.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
56.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
56.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
54.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
54.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
51.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
49.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
48.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
47.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
46.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
46.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
45.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
45.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
45.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
44.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
41.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
41.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
41.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
40.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
40.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
40.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
40.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
39.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
38.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
38.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
38.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
37.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
37.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
36.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
35.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
35.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
35.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
34.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
34.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
34.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
34.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
34.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
33.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
33.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
33.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
33.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
32.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
32.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
32.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
32.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
32.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
32.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
31.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
31.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
31.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
31.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
30.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
30.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
30.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
30.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
30.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
30.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
30.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
30.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
29.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
29.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
29.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
29.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
29.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
28.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
28.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
28.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
28.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
28.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
28.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
27.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
27.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
27.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
27.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
27.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
26.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
26.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
25.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
25.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
25.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
25.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
25.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
25.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
25.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
25.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
25.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
25.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
25.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
25.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
24.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
24.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
24.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
24.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
23.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
23.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
23.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
23.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
23.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
23.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
23.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
22.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
22.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
22.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
22.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
22.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
22.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
22.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
21.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
21.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
21.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
21.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
21.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
21.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
21.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
21.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
21.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
21.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
21.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
21.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
20.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
20.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
20.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
20.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
20.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
20.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
20.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
20.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
20.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
20.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
20.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
20.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
20.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
20.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
20.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
19.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
19.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
19.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
19.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
19.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
19.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
19.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
19.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
19.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
19.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
19.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
19.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
19.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
18.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
18.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
18.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
18.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
18.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
18.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
18.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
18.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
18.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
18.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
18.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
18.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
18.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
18.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
18.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
17.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
17.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
17.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
17.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
17.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
17.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
17.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
17.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
17.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
17.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
17.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
17.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
17.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
17.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
16.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
16.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
16.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
16.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
16.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
16.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
16.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
16.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
16.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
16.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
16.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
16.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
16.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
16.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
16.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
16.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
16.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
16.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
15.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
15.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
15.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
15.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
15.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
15.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
15.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
15.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
15.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
15.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
15.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
14.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
14.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
14.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
14.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
14.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
14.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
14.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
14.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
13.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
13.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
13.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
13.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
13.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
12.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
12.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
11.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
11.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
11.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
11.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
10.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
9.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
8.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CSNK1E is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.0
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
77.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
73.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
70.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
66.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
62.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
60.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
58.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
55.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
53.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
52.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
50.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
50.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
49.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
46.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
45.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
44.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
43.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
41.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
41.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
40.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
40.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
38.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
37.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
37.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
36.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
35.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
34.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
34.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
34.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
33.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
33.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
31.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
30.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
30.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
29.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
28.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
27.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
27.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
27.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
27.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
27.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
26.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
26.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
26.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
26.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
26.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
26.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
26.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
25.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
25.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
25.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
25.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
25.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
25.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
25.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
25.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
24.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
24.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
24.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
24.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
24.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
24.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
24.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
24.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
24.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
23.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
23.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
23.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
23.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
22.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
22.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
22.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
22.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
22.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
22.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
22.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
22.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
22.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
21.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
21.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
21.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
21.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
21.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
21.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
21.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
21.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
21.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
21.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
21.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
20.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
20.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
20.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
20.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
20.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
20.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
20.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
20.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
20.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
19.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
19.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
19.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
19.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
19.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
18.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
18.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
18.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
18.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
18.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
18.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
17.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
17.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
17.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
17.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
17.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
17.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
17.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
17.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
17.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
17.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
16.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
16.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
16.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
16.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
16.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
16.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
15.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
15.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
15.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
15.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
15.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
15.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
15.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
15.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
14.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
14.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
14.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
14.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
14.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
13.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
13.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
13.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
13.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
13.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
13.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
12.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
12.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
11.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
1.2
913
Tumor
0.8
427
Tumor
0.8
123
Tumor
0.8
267
Tumor
0.6
487
Tumor
0.6
635
Tumor
0.5
145
Tumor
0.5
671
Tumor
0.5
367
Tumor
0.5
433
Tumor
0.5
443
Tumor
0.5
951
Tumor
0.4
375
Tumor
0.4
257
Tumor
0.4
331
Tumor
0.4
663
Tumor
0.4
911
Tumor
0.4
647
Tumor
0.4
953
Tumor
0.4
965
Tumor
0.4
641
Tumor
0.4
112
Tumor
0.4
285
Tumor
0.4
435
Tumor
0.4
777
Tumor
0.4
423
Tumor
0.4
113
Tumor
0.4
525
Tumor
0.4
271
Tumor
0.4
277
Tumor
0.4
937
Tumor
0.3
957
Tumor
0.3
187
Tumor
0.3
385
Tumor
0.3
147
Tumor
0.3
127
Tumor
0.3
135
Tumor
0.3
297
Tumor
0.3
125
Tumor
0.3
311
Tumor
0.3
573
Tumor
0.3
395
Tumor
0.3
497
Tumor
0.3
545
Tumor
0.3
661
Tumor
0.3
873
Tumor
0.3
921
Tumor
0.3
185
Tumor
0.3
665
Tumor
0.2
1027
Tumor
0.2
313
Tumor
0.2
557
Tumor
0.2
981
Tumor
0.2
231
Tumor
0.2
537
Tumor
0.2
137
Tumor
0.2
527
Tumor
0.2
851
Tumor
0.2
341
Tumor
0.2
421
Tumor
0.2
817
Tumor
0.2
283
Tumor
0.2
723
Tumor
0.2
535
Tumor
0.2
923
Tumor
0.2
983
Tumor
0.2
463
Tumor
0.2
865
Tumor
0.2
396
Normal
0.2
425
Tumor
0.2
467
Tumor
0.2
1041
Tumor
0.2
391
Tumor
0.2
342
Normal
0.2
1031
Tumor
0.2
186
Normal
0.2
114
Normal
0.2
648
Normal
0.2
172
Normal
0.2
447
Tumor
0.2
967
Tumor
0.2
883
Tumor
0.2
394
Normal
0.2
743
Tumor
0.2
815
Tumor
0.2
477
Tumor
0.2
517
Tumor
0.2
222
Normal
0.2
413
Tumor
0.2
925
Tumor
0.1
351
Tumor
0.1
1015
Tumor
0.1
664
Normal
0.1
388
Normal
0.1
141
Tumor
0.1
1025
Tumor
0.1
162
Normal
0.1
1021
Tumor
0.1
666
Normal
0.1
387
Tumor
0.1
392
Normal
0.1
943
Tumor
0.1
211
Tumor
0.1
221
Tumor
0.1
445
Tumor
0.1
171
Tumor
0.1
881
Tumor
0.1
386
Normal
0.1
344
Normal
0.1
161
Tumor
0.1
471
Tumor
0.1
863
Tumor
0.1
491
Tumor
0.1
365
Tumor
0.1
455
Tumor
0.1
148
Normal
0.1
697
Tumor
0.1
393
Tumor
0.1
131
Tumor
0.1
982
Normal
0.1
975
Tumor
0.1
662
Normal
0.1
523
Tumor
0.1
737
Tumor
0.1
124
Normal
0.1
1045
Tumor
0.1
188
Normal
0.1
813
Tumor
0.1
196
Normal
0.1
444
Normal
0.1
431
Tumor
0.1
814
Normal
0.1
383
Tumor
0.1
191
Tumor
0.1
915
Tumor
0.1
357
Tumor
0.1
977
Tumor
0.1
434
Normal
0.1
268
Normal
0.0
515
Tumor
0.0
567
Tumor
0.0
1013
Tumor
0.0
824
Normal
0.0
857
Tumor
0.0
411
Tumor
0.0
126
Normal
0.0
223
Tumor
0.0
877
Tumor
0.0
745
Tumor
0.0
715
Tumor
0.0
917
Tumor
0.0
574
Normal
0.0
111
Normal
0.0
746
Normal
0.0
618
Normal
0.0
563
Tumor
0.0
513
Tumor
0.0
446
Normal
0.0
672
Normal
0.0
728
Normal
0.0
465
Tumor
0.0
534
Normal
0.0
361
Tumor
0.0
327
Tumor
0.0
451
Tumor
0.0
755
Tumor
0.0
217
Tumor
0.0
727
Tumor
0.0
627
Tumor
0.0
218
Normal
0.0
695
Tumor
0.0
918
Normal
0.0
128
Normal
0.0
138
Normal
0.0
955
Tumor
0.0
461
Tumor
0.0
636
Normal
0.0
384
Normal
0.0
356
Normal
0.0
572
Normal
0.0
818
Normal
0.0
258
Normal
0.0
192
Normal
0.0
564
Normal
0.0
284
Normal
0.0
214
Normal
0.0
616
Normal
0.0
968
Normal
0.0
558
Normal
0.0
212
Normal
0.0
261
Tumor
0.0
1016
Normal
0.0
426
Normal
0.0
358
Normal
0.0
785
Tumor
0.0
132
Normal
0.0
617
Tumor
0.0
355
Tumor
0.0
976
Normal
0.0
571
Tumor
0.0
493
Tumor
0.0
195
Tumor
0.0
922
Normal
0.0
628
Normal
0.0
362
Normal
0.0
823
Tumor
-0.1
867
Tumor
-0.1
136
Normal
-0.1
964
Normal
-0.1
213
Tumor
-0.1
1028
Normal
-0.1
858
Normal
-0.1
262
Normal
-0.1
227
Tumor
-0.1
436
Normal
-0.1
314
Normal
-0.1
428
Normal
-0.1
468
Normal
-0.1
954
Normal
-0.1
615
Tumor
-0.1
816
Normal
-0.1
376
Normal
-0.1
146
Normal
-0.1
278
Normal
-0.1
456
Normal
-0.1
952
Normal
-0.1
483
Tumor
-0.1
878
Normal
-0.1
568
Normal
-0.1
352
Normal
-0.1
862
Normal
-0.1
724
Normal
-0.1
861
Tumor
-0.1
312
Normal
-0.1
286
Normal
-0.1
742
Normal
-0.1
416
Normal
-0.1
938
Normal
-0.1
368
Normal
-0.1
786
Normal
-0.1
884
Normal
-0.1
984
Normal
-0.1
432
Normal
-0.1
298
Normal
-0.1
452
Normal
-0.1
926
Normal
-0.1
514
Normal
-0.1
642
Normal
-0.1
228
Normal
-0.1
473
Tumor
-0.1
978
Normal
-0.1
924
Normal
-0.1
353
Tumor
-0.1
328
Normal
-0.1
738
Normal
-0.1
142
Normal
-0.1
528
Normal
-0.1
1044
Normal
-0.1
415
Tumor
-0.1
448
Normal
-0.1
966
Normal
-0.1
424
Normal
-0.1
778
Normal
-0.1
422
Normal
-0.1
882
Normal
-0.1
412
Normal
-0.1
364
Normal
-0.1
343
Tumor
-0.1
1014
Normal
-0.1
713
Tumor
-0.1
366
Normal
-0.1
332
Normal
-0.1
866
Normal
-0.2
916
Normal
-0.2
852
Normal
-0.2
524
Normal
-0.2
958
Normal
-0.2
546
Normal
-0.2
1026
Normal
-0.2
232
Normal
-0.2
272
Normal
-0.2
414
Normal
-0.2
944
Normal
-0.2
464
Normal
-0.2
536
Normal
-0.2
741
Tumor
-0.2
492
Normal
-0.2
714
Normal
-0.2
488
Normal
-0.2
722
Normal
-0.2
685
Tumor
-0.2
963
Tumor
-0.2
864
Normal
-0.2
224
Normal
-0.2
696
Normal
-0.2
912
Normal
-0.2
956
Normal
-0.2
874
Normal
-0.2
744
Normal
-0.2
1032
Normal
-0.2
1042
Normal
-0.2
518
Normal
-0.2
686
Normal
-0.2
698
Normal
-0.2
554
Normal
-0.2
462
Normal
-0.2
466
Normal
-0.2
756
Normal
-0.2
484
Normal
-0.2
516
Normal
-0.2
482
Normal
-0.2
354
Normal
-0.2
1046
Normal
-0.2
553
Tumor
-0.2
526
Normal
-0.2
472
Normal
-0.2
498
Normal
-0.2
716
Normal
-0.2
363
Tumor
-0.2
538
Normal
-0.2
474
Normal
-0.3
481
Tumor
-0.3
914
Normal
-0.3
1043
Tumor
-0.3
868
Normal
-0.3
478
Normal
-0.3
1022
Normal
-0.3
721
Tumor
-0.3
494
Normal
-0.3
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
