HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.7 nTPM
HPA Brain:4.9 nTPM
GTEx:7.7 nTPM
FANTOM5:38.2 Scaled Tags Per Million
Pig:6.7 nTPM
Mouse:14.9 nTPM
Allen mouse:0.8 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 4.9
Sample id Sample description nTPM
Hippocampus
nTPM: 3.7
2621 Female, age 67, right hemisphere 7.6
1898 Male, age 80, left hemisphere 6.1
1855 Male, age 76, left hemisphere 3.8
2529 Female, age 94, left hemisphere 2.5
2148 Female, age 91, left hemisphere 2.2
1911 Female, age 85, right hemisphere 0.0
Dentate gyrus
nTPM: 2.9
2010 Male, age 76, both hemispheres 5.6
2528 Male, age 74, both hemispheres 4.9
2531 Female, age 67, both hemispheres 3.6
1927 Female, age 91, both hemispheres 1.6
2246 Female, age 85, both hemispheres 0.8
2530 Female, age 94, left hemisphere 0.7
Entorhinal gyrus
nTPM: 4.6
2764 Male, age 80, right hemisphere 8.7
1787 Male, age 76, left hemisphere 5.8
2686 Male, age 75, right hemisphere 5.5
1938 Female, age 85, left hemisphere 5.2
2117 Female, age 91, right hemisphere 2.1
2613 Female, age 94, left hemisphere 0.5
Hippocampus, CA1
nTPM: 4.7
2082 Female, age 91, right hemisphere 7.0
2749 Male, age 80, left hemisphere 6.1
1873 Female, age 85, both hemispheres 4.9
2045 Male, age 76, both hemispheres 3.5
2527 Male, age 74, both hemispheres 2.0
Hippocampus, CA2
nTPM: 3.1
1892 Male, age 76, both hemispheres 4.3
2249 Male, age 74, both hemispheres 4.3
1940 Female, age 85, left hemisphere 3.5
2113 Female, age 91, right hemisphere 3.2
1963 Male, age 80, left hemisphere 3.0
2437 Female, age 94, left hemisphere 0.5
Hippocampus, CA3
nTPM: 4.5
2620 Female, age 94, left hemisphere 7.5
1891 Female, age 85, both hemispheres 5.6
2137 Male, age 80, left hemisphere 4.7
1867 Male, age 76, both hemispheres 3.7
2861 Female, age 67, both hemispheres 3.4
2436 Male, age 74, both hemispheres 2.1
Parahippocampal cortex
nTPM: 4.4
2250 Female, age 67, right hemisphere 11.2
1933 Female, age 85, both hemispheres 6.3
2018 Male, age 76, both hemispheres 5.1
1850 Male, age 80, both hemispheres 4.7
1990 Female, age 91, right hemisphere 3.8
2693 Female, age 94, both hemispheres 3.8
2622 Female, age 67, right hemisphere 3.7
2532 Female, age 72, left hemisphere 3.2
2245 Female, age 91, both hemispheres 2.3
2692 Male, age 74, both hemispheres 0.0
Perirhinal gyrus
nTPM: 4.9
2521 Female, age 94, right hemisphere 6.8
1794 Male, age 80, right hemisphere 6.4
1847 Female, age 91, left hemisphere 5.4
1841 Female, age 85, right hemisphere 3.6
2848 Male, age 76, right hemisphere 2.5
Subiculum
nTPM: 3.0
2729 Female, age 91, right hemisphere 6.7
1977 Female, age 85, both hemispheres 6.1
2619 Male, age 74, both hemispheres 2.4
1901 Male, age 80, both hemispheres 1.5
2042 Male, age 76, both hemispheres 1.4
2438 Female, age 94, left hemisphere 0.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 7.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 7.7
Samples: 197

Max nTPM: 15.8
Min nTPM: 3.0
Std nTPM: 1.8
Median nTPM: 7.7
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 15.8
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 13.9
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 13.0
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 12.2
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 11.6
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 11.2
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 10.8
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 10.8
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 10.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 10.5
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 10.5
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 38.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 38.2
FF:10153-102I9 76 years, female 39.0
FF:10169-103B7 60 years, female 37.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 6.7
Pig sample Sample description nTPM
Subiculum
nTPM: 5.8
Samples: 4

Max nTPM: 6.2
Min nTPM: 5.6
Sample A Female 6.2
Sample B Female 5.6
Sample C Male 5.7
Sample D Male 5.6
Dorsal hippocampus
nTPM: 6.7
Samples: 4

Max nTPM: 7.6
Min nTPM: 5.9
Sample A Female 7.6
Sample B Female 6.8
Sample C Male 6.4
Sample D Male 5.9
Entorhinal cortex
nTPM: 5.4
Samples: 4

Max nTPM: 6.5
Min nTPM: 4.2
Sample A Female 6.5
Sample B Female 5.9
Sample C Male 5.1
Sample D Male 4.2
Ventral hippocampus
nTPM: 6.3
Samples: 4

Max nTPM: 7.2
Min nTPM: 5.0
Sample A Female 6.7
Sample B Female 5.0
Sample C Male 7.2
Sample D Male 6.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 14.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 12.9
Samples: 4

Max nTPM: 14.6
Min nTPM: 11.7
Sample A Male 11.8
Sample B Male 13.6
Sample C Female 14.6
Sample D Female 11.7
Hippocampal formation
nTPM: 14.9
Samples: 4

Max nTPM: 15.9
Min nTPM: 14.2
Sample A Male 15.9
Sample B Male 14.2
Sample C Female 14.8
Sample D Female 14.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.8
1458 Antisense, RP_040428_01_B03, Mouse strain C57BL/6J (56 days, male) 1.1
100142531 Antisense, RP_110421_01_C07, Mouse strain C57BL/6J (56 days, male) 0.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org