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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NCKIPSD is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
52.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
44.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
41.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
37.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
36.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
34.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
32.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
32.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
30.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
30.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
30.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
29.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
29.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
28.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
28.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
28.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
27.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
27.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
26.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
25.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
25.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
25.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
24.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
24.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
22.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
22.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
21.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
21.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
21.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
21.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
20.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
20.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
20.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
20.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
20.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
20.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
20.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
20.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
19.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
19.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
19.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
19.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
19.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
18.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
18.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
18.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
17.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
17.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
17.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
17.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
17.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
17.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
17.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
17.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
17.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
17.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
17.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
17.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
16.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
16.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
16.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
16.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
16.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
16.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
16.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
16.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
16.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
16.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
16.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
16.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
16.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
15.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
15.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
15.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
15.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
15.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
15.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
15.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
15.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
15.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
14.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
14.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
14.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
14.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
14.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
14.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
14.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
14.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
14.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
14.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
14.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
13.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
13.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
13.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
13.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
13.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
13.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
12.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
12.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
12.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
12.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
12.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
12.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
12.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
12.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
12.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
12.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
12.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
11.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
11.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
11.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
10.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
10.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
10.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
10.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
10.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
9.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
8.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
8.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
7.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
7.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NCKIPSD is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.1
Number of samples
231
Samples
Sample
Description
TPM
DO45253
0 years, male, NA, stage:2, alive, 870 days
27.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
24.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
24.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
21.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
21.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
19.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
16.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
16.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
16.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
16.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
16.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
15.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
15.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
15.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
15.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
14.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
14.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
14.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
13.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
12.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
12.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
11.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
11.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
11.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
10.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
10.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
9.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
9.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
7.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
5.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
5.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
4.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
3.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
3.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.1
161
Tumor
1.0
365
Tumor
0.9
423
Tumor
0.8
953
Tumor
0.8
357
Tumor
0.8
313
Tumor
0.7
375
Tumor
0.6
192
Normal
0.6
231
Tumor
0.6
513
Tumor
0.5
1013
Tumor
0.5
465
Tumor
0.5
483
Tumor
0.5
958
Normal
0.5
533
Tumor
0.5
342
Normal
0.4
125
Tumor
0.4
473
Tumor
0.4
663
Tumor
0.4
257
Tumor
0.3
464
Normal
0.3
477
Tumor
0.3
785
Tumor
0.3
976
Normal
0.3
411
Tumor
0.3
525
Tumor
0.3
427
Tumor
0.3
616
Normal
0.3
222
Normal
0.3
344
Normal
0.3
354
Normal
0.3
648
Normal
0.3
433
Tumor
0.3
563
Tumor
0.3
221
Tumor
0.2
818
Normal
0.2
127
Tumor
0.2
391
Tumor
0.2
445
Tumor
0.2
938
Normal
0.2
446
Normal
0.2
922
Normal
0.2
641
Tumor
0.2
573
Tumor
0.2
278
Normal
0.2
352
Normal
0.2
968
Normal
0.2
498
Normal
0.2
918
Normal
0.2
715
Tumor
0.2
1041
Tumor
0.2
957
Tumor
0.2
488
Normal
0.2
984
Normal
0.2
463
Tumor
0.2
196
Normal
0.2
444
Normal
0.2
268
Normal
0.2
572
Normal
0.2
664
Normal
0.2
618
Normal
0.2
923
Tumor
0.2
358
Normal
0.2
484
Normal
0.2
526
Normal
0.2
741
Tumor
0.2
944
Normal
0.2
258
Normal
0.2
617
Tumor
0.2
1032
Normal
0.2
298
Normal
0.2
865
Tumor
0.2
744
Normal
0.2
491
Tumor
0.2
456
Normal
0.2
567
Tumor
0.2
146
Normal
0.2
128
Normal
0.2
314
Normal
0.2
672
Normal
0.1
874
Normal
0.1
277
Tumor
0.1
642
Normal
0.1
466
Normal
0.1
421
Tumor
0.1
343
Tumor
0.1
452
Normal
0.1
395
Tumor
0.1
428
Normal
0.1
267
Tumor
0.1
1014
Normal
0.1
981
Tumor
0.1
537
Tumor
0.1
964
Normal
0.1
926
Normal
0.1
112
Tumor
0.1
312
Normal
0.1
111
Normal
0.1
478
Normal
0.1
124
Normal
0.1
924
Normal
0.1
574
Normal
0.1
518
Normal
0.1
126
Normal
0.1
481
Tumor
0.1
396
Normal
0.1
272
Normal
0.1
866
Normal
0.1
171
Tumor
0.1
413
Tumor
0.1
954
Normal
0.1
138
Normal
0.1
416
Normal
0.1
424
Normal
0.1
868
Normal
0.1
951
Tumor
0.1
482
Normal
0.1
723
Tumor
0.1
436
Normal
0.1
195
Tumor
0.1
414
Normal
0.1
332
Normal
0.1
824
Normal
0.1
364
Normal
0.1
136
Normal
0.1
361
Tumor
0.1
224
Normal
0.1
412
Normal
0.1
467
Tumor
0.1
422
Normal
0.1
218
Normal
0.1
852
Normal
0.1
515
Tumor
0.1
353
Tumor
0.1
956
Normal
0.1
878
Normal
0.1
461
Tumor
0.1
386
Normal
0.1
516
Normal
0.1
474
Normal
0.1
261
Tumor
0.1
232
Normal
0.1
912
Normal
0.1
356
Normal
0.0
884
Normal
0.0
716
Normal
0.0
558
Normal
0.0
217
Tumor
0.0
553
Tumor
0.0
366
Normal
0.0
568
Normal
0.0
462
Normal
0.0
534
Normal
0.0
666
Normal
0.0
685
Tumor
0.0
554
Normal
0.0
227
Tumor
0.0
636
Normal
0.0
816
Normal
0.0
714
Normal
0.0
388
Normal
0.0
952
Normal
0.0
468
Normal
0.0
186
Normal
0.0
1042
Normal
0.0
368
Normal
0.0
311
Tumor
0.0
492
Normal
0.0
132
Normal
0.0
328
Normal
0.0
815
Tumor
0.0
514
Normal
0.0
434
Normal
0.0
1016
Normal
0.0
982
Normal
0.0
262
Normal
0.0
955
Tumor
0.0
214
Normal
0.0
557
Tumor
0.0
148
Normal
N/A
426
Normal
0.0
435
Tumor
0.0
451
Tumor
0.0
286
Normal
0.0
862
Normal
0.0
362
Normal
0.0
778
Normal
0.0
1028
Normal
0.0
864
Normal
0.0
415
Tumor
0.0
494
Normal
0.0
628
Normal
0.0
1026
Normal
0.0
746
Normal
0.0
978
Normal
0.0
285
Tumor
0.0
384
Normal
0.0
376
Normal
0.0
432
Normal
0.0
448
Normal
0.0
914
Normal
0.0
487
Tumor
0.0
873
Tumor
0.0
882
Normal
0.0
1046
Normal
0.0
114
Normal
0.0
162
Normal
0.0
1022
Normal
0.0
185
Tumor
0.0
698
Normal
0.0
564
Normal
0.0
472
Normal
0.0
538
Normal
0.0
271
Tumor
0.0
647
Tumor
-0.1
786
Normal
-0.1
943
Tumor
-0.1
327
Tumor
-0.1
355
Tumor
-0.1
916
Normal
-0.1
858
Normal
-0.1
756
Normal
-0.1
284
Normal
-0.1
857
Tumor
-0.1
867
Tumor
-0.1
615
Tumor
-0.1
524
Normal
-0.1
172
Normal
-0.1
911
Tumor
-0.1
212
Normal
-0.1
925
Tumor
-0.1
913
Tumor
-0.1
142
Normal
-0.1
341
Tumor
-0.1
917
Tumor
-0.1
528
Normal
-0.1
722
Normal
-0.1
695
Tumor
-0.1
141
Tumor
-0.1
213
Tumor
-0.1
394
Normal
-0.1
662
Normal
-0.1
738
Normal
-0.1
536
Normal
-0.1
883
Tumor
-0.1
523
Tumor
-0.1
686
Normal
-0.1
742
Normal
-0.1
727
Tumor
-0.1
813
Tumor
-0.1
331
Tumor
-0.1
966
Normal
-0.2
728
Normal
-0.2
881
Tumor
-0.2
546
Normal
-0.2
392
Normal
-0.2
393
Tumor
-0.2
777
Tumor
-0.2
1044
Normal
-0.2
696
Normal
-0.2
497
Tumor
-0.2
737
Tumor
-0.2
187
Tumor
-0.2
137
Tumor
-0.2
915
Tumor
-0.2
383
Tumor
-0.2
283
Tumor
-0.2
363
Tumor
-0.2
455
Tumor
-0.2
571
Tumor
-0.2
983
Tumor
-0.2
191
Tumor
-0.2
228
Normal
-0.2
814
Normal
-0.2
635
Tumor
-0.2
123
Tumor
-0.2
535
Tumor
-0.2
877
Tumor
-0.2
817
Tumor
-0.2
1031
Tumor
-0.2
188
Normal
-0.2
1045
Tumor
-0.2
937
Tumor
-0.2
493
Tumor
-0.2
517
Tumor
-0.3
443
Tumor
-0.3
367
Tumor
-0.3
387
Tumor
-0.3
697
Tumor
-0.3
1025
Tumor
-0.3
823
Tumor
-0.3
145
Tumor
-0.3
975
Tumor
-0.3
297
Tumor
-0.3
135
Tumor
-0.3
721
Tumor
-0.3
921
Tumor
-0.3
385
Tumor
-0.3
471
Tumor
-0.3
851
Tumor
-0.4
671
Tumor
-0.4
113
Tumor
-0.4
963
Tumor
-0.4
977
Tumor
-0.4
431
Tumor
-0.4
863
Tumor
-0.4
425
Tumor
-0.4
861
Tumor
-0.4
1015
Tumor
-0.4
223
Tumor
-0.4
713
Tumor
-0.4
131
Tumor
-0.5
665
Tumor
-0.5
1021
Tumor
-0.5
147
Tumor
-0.5
1027
Tumor
-0.5
745
Tumor
-0.5
545
Tumor
-0.5
755
Tumor
-0.5
351
Tumor
-0.5
967
Tumor
-0.5
527
Tumor
-0.5
1043
Tumor
-0.6
965
Tumor
-0.6
211
Tumor
-0.6
743
Tumor
-0.6
661
Tumor
-0.7
447
Tumor
-0.8
724
Normal
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.