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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GPSM3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
102.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
63.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
42.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
39.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
38.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
34.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
34.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
33.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
32.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
32.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
28.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
27.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
26.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
26.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
26.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
26.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
22.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
21.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
20.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
18.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
18.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
17.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
17.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
17.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
16.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
16.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
16.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
16.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
16.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
15.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
15.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
14.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
14.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
14.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
14.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
13.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
13.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
13.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
12.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
10.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
8.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
7.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
7.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
7.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
6.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
6.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
5.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
5.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
4.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
4.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
4.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
4.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
3.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
3.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
3.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
3.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
2.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
2.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
2.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
2.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
2.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
2.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
1.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GPSM3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.4
Number of samples
231
Samples
Sample
Description
TPM
DO45277
0 years, male, NA, stage:3, alive, 600 days
90.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
89.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
62.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
56.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
54.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
52.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
47.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
45.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
41.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
36.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
34.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
33.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
31.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
30.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
29.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
29.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
28.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
27.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
26.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
25.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
25.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
24.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
24.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
24.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
23.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
23.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
23.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
22.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
22.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
22.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
22.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
21.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
21.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
21.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
21.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
21.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
21.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
20.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
20.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
20.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
20.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
19.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
19.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
19.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
19.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
18.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
18.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
18.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
18.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
17.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
17.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
16.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
15.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
15.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
15.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
14.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
12.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
11.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
10.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
10.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
8.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
6.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
6.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
5.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
4.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
4.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
4.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
4.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
4.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
3.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
3.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
3.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
3.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
2.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
2.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
2.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
2.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
2.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
2.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
2.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
2.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
2.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
2.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
2.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
1.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
1.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
211
Tumor
1.4
311
Tumor
1.3
434
Normal
1.1
661
Tumor
1.1
343
Tumor
1.0
467
Tumor
1.0
126
Normal
1.0
192
Normal
1.0
188
Normal
1.0
444
Normal
0.9
224
Normal
0.9
217
Tumor
0.9
385
Tumor
0.8
195
Tumor
0.8
686
Normal
0.8
262
Normal
0.8
312
Normal
0.8
213
Tumor
0.8
386
Normal
0.8
716
Normal
0.7
124
Normal
0.7
468
Normal
0.7
114
Normal
0.7
672
Normal
0.7
714
Normal
0.7
352
Normal
0.7
138
Normal
0.7
391
Tumor
0.7
498
Normal
0.7
978
Normal
0.7
814
Normal
0.7
722
Normal
0.7
455
Tumor
0.7
721
Tumor
0.7
492
Normal
0.6
125
Tumor
0.6
713
Tumor
0.6
145
Tumor
0.6
421
Tumor
0.6
272
Normal
0.6
395
Tumor
0.6
332
Normal
0.6
432
Normal
0.6
524
Normal
0.6
366
Normal
0.6
383
Tumor
0.6
384
Normal
0.5
724
Normal
0.5
966
Normal
0.5
344
Normal
0.5
851
Tumor
0.5
146
Normal
0.5
536
Normal
0.5
456
Normal
0.5
362
Normal
0.5
446
Normal
0.5
111
Normal
0.5
283
Tumor
0.5
662
Normal
0.5
488
Normal
0.5
191
Tumor
0.5
278
Normal
0.5
696
Normal
0.5
268
Normal
0.5
284
Normal
0.4
331
Tumor
0.4
447
Tumor
0.4
742
Normal
0.4
744
Normal
0.4
666
Normal
0.4
396
Normal
0.4
298
Normal
0.4
557
Tumor
0.4
424
Normal
0.4
185
Tumor
0.4
375
Tumor
0.4
187
Tumor
0.4
628
Normal
0.4
223
Tumor
0.4
218
Normal
0.4
778
Normal
0.4
128
Normal
0.4
368
Normal
0.3
413
Tumor
0.3
214
Normal
0.3
142
Normal
0.3
943
Tumor
0.3
857
Tumor
0.3
258
Normal
0.3
815
Tumor
0.3
938
Normal
0.3
297
Tumor
0.3
852
Normal
0.3
546
Normal
0.3
914
Normal
0.3
494
Normal
0.3
954
Normal
0.3
464
Normal
0.3
132
Normal
0.3
558
Normal
0.3
671
Tumor
0.3
365
Tumor
0.3
388
Normal
0.3
738
Normal
0.3
917
Tumor
0.3
392
Normal
0.3
394
Normal
0.3
141
Tumor
0.3
136
Normal
0.2
212
Normal
0.2
354
Normal
0.2
823
Tumor
0.2
314
Normal
0.2
573
Tumor
0.2
723
Tumor
0.2
976
Normal
0.2
534
Normal
0.2
963
Tumor
0.2
478
Normal
0.2
466
Normal
0.2
135
Tumor
0.2
433
Tumor
0.2
563
Tumor
0.2
1043
Tumor
0.2
535
Tumor
0.2
514
Normal
0.2
858
Normal
0.2
451
Tumor
0.2
1046
Normal
0.2
698
Normal
0.2
277
Tumor
0.2
952
Normal
0.2
1044
Normal
0.2
641
Tumor
0.2
428
Normal
0.2
414
Normal
0.2
286
Normal
0.2
1031
Tumor
0.2
816
Normal
0.1
483
Tumor
0.1
664
Normal
0.1
461
Tumor
0.1
818
Normal
0.1
491
Tumor
0.1
1015
Tumor
0.1
518
Normal
0.1
574
Normal
0.1
196
Normal
0.1
817
Tumor
0.1
113
Tumor
0.1
426
Normal
0.1
436
Normal
0.1
367
Tumor
0.1
697
Tumor
0.1
137
Tumor
0.1
452
Normal
0.1
387
Tumor
0.1
423
Tumor
0.1
528
Normal
0.1
422
Normal
0.1
493
Tumor
0.1
728
Normal
0.1
516
Normal
0.1
526
Normal
0.1
642
Normal
0.1
427
Tumor
0.1
648
Normal
0.1
463
Tumor
0.0
161
Tumor
0.0
328
Normal
0.0
127
Tumor
0.0
364
Normal
0.0
874
Normal
0.0
984
Normal
0.0
112
Tumor
0.0
983
Tumor
0.0
861
Tumor
0.0
538
Normal
0.0
1016
Normal
0.0
376
Normal
0.0
813
Tumor
0.0
715
Tumor
0.0
231
Tumor
0.0
222
Normal
0.0
232
Normal
0.0
665
Tumor
0.0
786
Normal
0.0
864
Normal
0.0
636
Normal
0.0
975
Tumor
0.0
824
Normal
-0.1
868
Normal
-0.1
881
Tumor
-0.1
415
Tumor
-0.1
358
Normal
-0.1
617
Tumor
-0.1
944
Normal
-0.1
564
Normal
-0.1
756
Normal
-0.1
982
Normal
-0.1
525
Tumor
-0.1
356
Normal
-0.1
261
Tumor
-0.1
228
Normal
-0.1
471
Tumor
-0.1
866
Normal
-0.1
1014
Normal
-0.1
554
Normal
-0.1
867
Tumor
-0.1
958
Normal
-0.1
968
Normal
-0.2
877
Tumor
-0.2
618
Normal
-0.2
1028
Normal
-0.2
1045
Tumor
-0.2
416
Normal
-0.2
221
Tumor
-0.2
1042
Normal
-0.2
663
Tumor
-0.2
162
Normal
-0.2
148
Normal
-0.2
431
Tumor
-0.2
685
Tumor
-0.2
616
Normal
-0.2
964
Normal
-0.2
955
Tumor
-0.2
627
Tumor
-0.2
695
Tumor
-0.3
172
Normal
-0.3
474
Normal
-0.3
1022
Normal
-0.3
363
Tumor
-0.3
412
Normal
-0.3
186
Normal
-0.3
568
Normal
-0.3
341
Tumor
-0.3
956
Normal
-0.3
1026
Normal
-0.3
313
Tumor
-0.3
472
Normal
-0.3
916
Normal
-0.3
271
Tumor
-0.3
462
Normal
-0.4
123
Tumor
-0.4
785
Tumor
-0.4
267
Tumor
-0.4
727
Tumor
-0.4
353
Tumor
-0.4
482
Normal
-0.4
443
Tumor
-0.4
862
Normal
-0.4
913
Tumor
-0.4
977
Tumor
-0.4
465
Tumor
-0.5
1032
Normal
-0.5
445
Tumor
-0.5
448
Normal
-0.5
393
Tumor
-0.5
361
Tumor
-0.5
572
Normal
-0.5
487
Tumor
-0.5
517
Tumor
-0.5
615
Tumor
-0.5
327
Tumor
-0.5
882
Normal
-0.5
926
Normal
-0.5
553
Tumor
-0.6
746
Normal
-0.6
484
Normal
-0.6
355
Tumor
-0.6
497
Tumor
-0.6
863
Tumor
-0.6
873
Tumor
-0.6
755
Tumor
-0.6
918
Normal
-0.6
878
Normal
-0.6
912
Normal
-0.7
741
Tumor
-0.7
884
Normal
-0.7
922
Normal
-0.7
257
Tumor
-0.7
425
Tumor
-0.7
411
Tumor
-0.7
285
Tumor
-0.7
865
Tumor
-0.8
953
Tumor
-0.8
925
Tumor
-0.8
937
Tumor
-0.8
481
Tumor
-0.8
515
Tumor
-0.8
1027
Tumor
-0.8
227
Tumor
-0.8
435
Tumor
-0.8
537
Tumor
-0.8
951
Tumor
-0.8
342
Normal
-0.9
1025
Tumor
-0.9
567
Tumor
-0.9
545
Tumor
-0.9
647
Tumor
-0.9
981
Tumor
-0.9
967
Tumor
-0.9
745
Tumor
-1.0
915
Tumor
-1.0
571
Tumor
-1.0
924
Normal
-1.0
883
Tumor
-1.0
1021
Tumor
-1.0
527
Tumor
-1.0
1041
Tumor
-1.0
513
Tumor
-1.0
477
Tumor
-1.1
635
Tumor
-1.1
147
Tumor
-1.1
533
Tumor
-1.1
957
Tumor
-1.2
523
Tumor
-1.2
921
Tumor
-1.2
923
Tumor
-1.2
351
Tumor
-1.3
777
Tumor
-1.3
131
Tumor
-1.3
965
Tumor
-1.3
743
Tumor
-1.4
737
Tumor
-1.4
171
Tumor
-1.4
911
Tumor
-1.4
1013
Tumor
-1.6
357
Tumor
-1.6
473
Tumor
-1.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.