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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HEXA is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
36.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
187.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
164.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
127.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
124.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
111.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
98.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
95.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
93.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
92.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
90.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
88.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
86.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
85.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
85.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
83.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
82.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
82.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
82.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
81.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
81.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
81.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
81.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
80.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
79.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
79.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
79.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
78.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
78.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
78.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
77.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
76.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
74.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
74.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
73.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
72.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
71.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
71.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
71.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
71.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
70.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
70.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
69.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
68.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
68.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
68.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
68.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
68.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
67.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
65.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
62.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
62.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
62.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
62.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
61.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
60.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
60.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
59.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
59.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
59.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
59.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
57.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
56.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
56.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
56.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
56.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
56.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
55.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
53.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
53.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
52.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
51.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
51.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
51.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
51.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
50.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
50.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
50.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
49.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
49.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
49.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
49.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
49.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
49.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
48.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
48.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
48.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
48.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
47.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
47.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
47.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
47.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
46.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
46.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
46.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
46.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
46.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
45.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
45.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
45.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
44.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
44.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
44.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
44.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
44.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
44.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
44.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
43.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
43.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
43.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
42.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
42.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
42.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
42.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
42.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
42.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
42.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
42.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
41.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
41.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
41.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
41.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
41.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
41.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
41.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
40.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
40.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
40.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
40.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
39.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
39.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
38.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
38.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
38.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
38.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
38.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
38.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
38.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
38.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
38.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
38.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
37.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
37.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
37.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
37.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
37.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
37.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
36.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
36.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
36.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
36.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
35.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
35.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
35.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
35.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
35.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
34.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
34.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
34.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
34.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
34.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
34.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
34.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
34.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
34.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
34.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
33.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
33.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
33.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
33.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
33.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
33.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
33.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
33.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
33.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
33.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
33.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
32.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
32.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
32.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
32.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
31.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
31.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
31.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
31.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
31.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
31.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
31.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
31.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
30.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
30.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
30.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
30.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
29.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
29.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
29.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
29.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
28.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
28.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
28.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
28.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
28.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
28.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
28.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
28.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
28.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
28.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
27.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
27.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
27.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
27.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
27.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
26.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
26.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
26.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
26.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
26.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
26.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
26.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
26.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
26.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
26.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
25.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
25.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
25.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
25.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
25.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
25.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
25.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
25.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
24.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
24.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
24.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
24.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
24.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
24.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
24.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
24.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
24.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
24.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
24.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
24.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
24.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
24.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
23.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
23.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
23.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
23.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
23.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
23.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
23.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
23.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
23.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
22.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
22.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
22.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
22.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
22.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
22.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
21.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
21.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
21.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
21.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
21.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
21.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
21.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
20.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
20.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
20.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
20.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
20.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
19.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
19.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
19.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
19.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
19.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
19.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
19.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
19.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
19.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
19.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
18.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
18.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
18.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
18.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
18.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
18.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
18.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
17.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
17.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
17.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
16.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
16.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
16.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
16.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
16.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
16.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
16.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
16.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
16.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
15.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
15.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
15.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
15.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
15.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
14.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
14.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
14.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
14.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
14.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
13.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
13.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
13.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
12.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
12.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
10.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
10.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HEXA is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
59.3
Number of samples
231
Samples
Sample
Description
TPM
DO23529
0 years, male, NA, stage:4, alive, 930 days
309.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
214.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
208.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
167.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
149.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
140.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
137.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
133.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
131.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
129.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
126.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
125.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
125.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
122.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
120.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
118.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
116.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
115.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
111.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
109.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
109.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
106.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
105.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
102.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
97.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
95.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
93.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
92.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
92.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
91.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
90.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
90.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
89.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
87.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
87.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
86.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
85.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
85.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
85.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
85.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
84.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
83.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
83.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
82.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
82.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
81.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
80.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
80.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
79.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
79.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
78.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
78.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
76.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
76.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
76.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
75.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
75.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
74.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
73.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
72.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
71.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
68.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
68.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
67.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
67.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
66.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
66.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
66.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
66.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
65.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
65.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
65.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
65.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
64.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
64.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
64.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
64.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
64.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
63.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
63.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
62.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
62.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
62.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
62.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
61.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
60.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
60.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
59.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
59.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
58.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
58.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
58.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
58.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
57.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
57.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
57.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
56.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
56.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
56.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
56.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
55.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
54.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
54.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
53.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
53.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
53.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
53.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
53.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
51.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
51.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
51.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
51.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
51.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
50.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
50.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
50.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
49.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
49.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
48.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
48.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
48.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
48.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
47.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
47.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
47.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
47.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
47.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
46.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
46.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
46.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
46.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
46.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
45.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
45.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
44.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
44.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
44.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
44.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
43.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
42.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
42.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
42.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
42.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
42.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
42.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
41.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
41.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
40.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
40.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
40.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
40.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
40.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
40.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
40.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
39.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
39.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
39.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
39.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
38.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
38.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
38.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
38.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
37.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
37.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
36.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
36.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
35.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
35.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
35.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
35.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
35.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
35.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
35.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
35.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
34.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
34.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
34.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
34.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
34.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
33.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
33.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
33.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
32.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
32.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
31.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
31.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
31.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
31.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
31.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
31.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
31.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
30.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
30.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
30.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
29.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
29.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
29.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
29.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
29.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
29.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
29.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
29.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
29.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
29.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
28.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
28.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
28.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
28.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
27.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
27.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
27.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
27.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
27.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
27.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
26.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
26.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
25.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
25.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
24.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
22.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
22.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
22.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
21.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
20.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
19.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
19.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
18.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
16.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
16.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
387
Tumor
1.3
231
Tumor
1.2
1041
Tumor
0.8
557
Tumor
0.8
817
Tumor
0.8
135
Tumor
0.8
715
Tumor
0.7
953
Tumor
0.7
435
Tumor
0.7
911
Tumor
0.7
171
Tumor
0.7
257
Tumor
0.7
641
Tumor
0.7
661
Tumor
0.6
1027
Tumor
0.6
421
Tumor
0.6
851
Tumor
0.6
367
Tumor
0.5
313
Tumor
0.5
261
Tumor
0.5
573
Tumor
0.5
124
Normal
0.4
663
Tumor
0.4
467
Tumor
0.4
363
Tumor
0.4
525
Tumor
0.4
123
Tumor
0.4
567
Tumor
0.4
137
Tumor
0.4
127
Tumor
0.3
983
Tumor
0.3
395
Tumor
0.3
147
Tumor
0.3
867
Tumor
0.3
227
Tumor
0.3
443
Tumor
0.3
283
Tumor
0.3
394
Normal
0.3
111
Normal
0.3
125
Tumor
0.2
343
Tumor
0.2
447
Tumor
0.2
965
Tumor
0.2
685
Tumor
0.2
385
Tumor
0.2
461
Tumor
0.2
925
Tumor
0.2
267
Tumor
0.2
221
Tumor
0.2
433
Tumor
0.2
357
Tumor
0.2
951
Tumor
0.2
112
Tumor
0.2
141
Tumor
0.1
745
Tumor
0.1
527
Tumor
0.1
571
Tumor
0.1
913
Tumor
0.1
526
Normal
0.1
1015
Tumor
0.1
311
Tumor
0.1
713
Tumor
0.1
114
Normal
0.1
915
Tumor
0.1
445
Tumor
0.1
434
Normal
0.1
617
Tumor
0.1
361
Tumor
0.1
466
Normal
0.1
425
Tumor
0.1
188
Normal
0.1
358
Normal
0.0
868
Normal
0.0
755
Tumor
0.0
312
Normal
0.0
414
Normal
0.0
161
Tumor
0.0
493
Tumor
0.0
857
Tumor
0.0
957
Tumor
0.0
386
Normal
0.0
344
Normal
0.0
491
Tumor
0.0
375
Tumor
0.0
232
Normal
0.0
537
Tumor
0.0
272
Normal
0.0
1016
Normal
0.0
881
Tumor
0.0
128
Normal
0.0
636
Normal
0.0
428
Normal
0.0
515
Tumor
0.0
354
Normal
0.0
212
Normal
0.0
356
Normal
0.0
662
Normal
0.0
258
Normal
0.0
494
Normal
0.0
136
Normal
0.0
388
Normal
0.0
574
Normal
0.0
113
Tumor
0.0
627
Tumor
0.0
191
Tumor
0.0
342
Normal
0.0
396
Normal
0.0
728
Normal
0.0
665
Tumor
0.0
664
Normal
0.0
975
Tumor
0.0
351
Tumor
0.0
514
Normal
0.0
452
Normal
0.0
814
Normal
0.0
422
Normal
0.0
126
Normal
0.0
535
Tumor
0.0
647
Tumor
0.0
432
Normal
0.0
477
Tumor
0.0
516
Normal
0.0
538
Normal
0.0
384
Normal
-0.1
858
Normal
-0.1
878
Normal
-0.1
686
Normal
-0.1
916
Normal
-0.1
262
Normal
-0.1
883
Tumor
-0.1
268
Normal
-0.1
723
Tumor
-0.1
352
Normal
-0.1
464
Normal
-0.1
224
Normal
-0.1
462
Normal
-0.1
952
Normal
-0.1
423
Tumor
-0.1
392
Normal
-0.1
743
Tumor
-0.1
327
Tumor
-0.1
426
Normal
-0.1
195
Tumor
-0.1
436
Normal
-0.1
722
Normal
-0.1
786
Normal
-0.1
744
Normal
-0.1
852
Normal
-0.1
912
Normal
-0.1
424
Normal
-0.1
223
Tumor
-0.1
362
Normal
-0.1
955
Tumor
-0.1
1042
Normal
-0.1
648
Normal
-0.1
186
Normal
-0.1
427
Tumor
-0.1
815
Tumor
-0.1
1028
Normal
-0.1
558
Normal
-0.1
314
Normal
-0.1
864
Normal
-0.1
738
Normal
-0.1
368
Normal
-0.1
746
Normal
-0.1
132
Normal
-0.1
813
Tumor
-0.1
148
Normal
-0.1
185
Tumor
-0.1
455
Tumor
-0.1
528
Normal
-0.1
353
Tumor
-0.1
187
Tumor
-0.1
816
Normal
-0.1
568
Normal
-0.1
391
Tumor
-0.1
696
Normal
-0.1
741
Tumor
-0.1
328
Normal
-0.1
524
Normal
-0.1
213
Tumor
-0.2
471
Tumor
-0.2
921
Tumor
-0.2
383
Tumor
-0.2
192
Normal
-0.2
497
Tumor
-0.2
778
Normal
-0.2
618
Normal
-0.2
616
Normal
-0.2
278
Normal
-0.2
615
Tumor
-0.2
914
Normal
-0.2
411
Tumor
-0.2
172
Normal
-0.2
882
Normal
-0.2
777
Tumor
-0.2
917
Tumor
-0.2
742
Normal
-0.2
978
Normal
-0.2
474
Normal
-0.2
492
Normal
-0.2
142
Normal
-0.2
214
Normal
-0.2
286
Normal
-0.2
866
Normal
-0.2
785
Tumor
-0.2
724
Normal
-0.2
628
Normal
-0.2
984
Normal
-0.2
222
Normal
-0.2
884
Normal
-0.2
446
Normal
-0.2
341
Tumor
-0.2
1021
Tumor
-0.2
824
Normal
-0.2
635
Tumor
-0.2
918
Normal
-0.2
756
Normal
-0.2
572
Normal
-0.2
716
Normal
-0.2
412
Normal
-0.2
297
Tumor
-0.2
488
Normal
-0.2
482
Normal
-0.2
145
Tumor
-0.2
444
Normal
-0.2
874
Normal
-0.2
218
Normal
-0.2
162
Normal
-0.2
553
Tumor
-0.2
666
Normal
-0.2
546
Normal
-0.2
332
Normal
-0.2
672
Normal
-0.2
146
Normal
-0.2
1014
Normal
-0.2
355
Tumor
-0.2
923
Tumor
-0.2
487
Tumor
-0.2
714
Normal
-0.2
818
Normal
-0.2
944
Normal
-0.2
472
Normal
-0.2
376
Normal
-0.2
298
Normal
-0.2
473
Tumor
-0.2
642
Normal
-0.2
534
Normal
-0.3
416
Normal
-0.3
196
Normal
-0.3
365
Tumor
-0.3
926
Normal
-0.3
563
Tumor
-0.3
456
Normal
-0.3
364
Normal
-0.3
1045
Tumor
-0.3
468
Normal
-0.3
228
Normal
-0.3
954
Normal
-0.3
956
Normal
-0.3
284
Normal
-0.3
393
Tumor
-0.3
554
Normal
-0.3
518
Normal
-0.3
976
Normal
-0.3
536
Normal
-0.3
1026
Normal
-0.3
366
Normal
-0.3
938
Normal
-0.3
943
Tumor
-0.3
1022
Normal
-0.3
478
Normal
-0.3
823
Tumor
-0.3
138
Normal
-0.3
271
Tumor
-0.3
564
Normal
-0.3
498
Normal
-0.3
671
Tumor
-0.3
513
Tumor
-0.3
924
Normal
-0.3
331
Tumor
-0.3
922
Normal
-0.4
483
Tumor
-0.4
217
Tumor
-0.4
863
Tumor
-0.4
982
Normal
-0.4
211
Tumor
-0.4
958
Normal
-0.4
415
Tumor
-0.4
285
Tumor
-0.4
1044
Normal
-0.4
981
Tumor
-0.4
964
Normal
-0.4
966
Normal
-0.4
727
Tumor
-0.4
697
Tumor
-0.4
484
Normal
-0.4
517
Tumor
-0.4
861
Tumor
-0.4
862
Normal
-0.4
451
Tumor
-0.5
545
Tumor
-0.5
533
Tumor
-0.5
481
Tumor
-0.5
413
Tumor
-0.5
698
Normal
-0.5
448
Normal
-0.5
1032
Normal
-0.5
1013
Tumor
-0.5
877
Tumor
-0.5
721
Tumor
-0.5
873
Tumor
-0.5
1046
Normal
-0.5
277
Tumor
-0.6
963
Tumor
-0.6
937
Tumor
-0.6
977
Tumor
-0.6
431
Tumor
-0.6
968
Normal
-0.6
131
Tumor
-0.6
463
Tumor
-0.7
737
Tumor
-0.7
695
Tumor
-0.7
1025
Tumor
-0.7
1031
Tumor
-0.8
465
Tumor
-0.8
1043
Tumor
-0.9
523
Tumor
-0.9
865
Tumor
-1.0
967
Tumor
-1.1
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
