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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMX2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
54.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
146.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
139.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
134.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
118.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
112.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
110.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
107.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
103.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
98.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
96.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
95.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
94.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
94.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
94.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
93.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
93.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
93.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
91.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
91.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
91.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
91.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
91.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
91.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
91.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
91.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
90.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
88.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
87.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
87.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
87.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
85.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
85.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
84.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
84.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
83.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
83.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
83.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
82.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
82.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
82.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
81.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
80.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
80.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
80.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
79.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
78.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
77.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
76.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
76.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
76.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
75.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
75.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
75.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
75.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
74.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
74.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
73.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
73.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
73.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
73.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
73.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
72.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
72.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
72.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
71.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
71.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
71.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
70.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
70.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
70.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
69.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
69.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
68.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
68.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
68.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
68.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
67.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
67.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
67.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
66.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
66.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
65.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
65.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
65.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
65.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
65.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
65.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
65.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
65.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
64.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
64.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
64.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
64.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
64.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
64.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
63.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
63.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
63.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
63.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
63.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
63.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
63.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
63.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
62.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
62.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
62.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
62.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
62.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
61.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
61.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
61.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
61.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
61.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
60.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
60.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
60.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
60.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
59.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
59.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
59.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
59.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
59.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
58.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
58.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
58.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
58.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
57.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
57.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
57.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
57.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
57.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
57.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
57.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
56.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
56.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
56.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
56.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
56.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
56.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
55.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
55.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
55.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
55.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
54.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
54.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
54.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
54.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
54.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
53.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
53.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
53.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
53.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
53.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
53.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
53.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
53.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
53.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
52.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
52.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
52.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
52.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
52.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
52.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
51.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
51.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
51.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
51.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
51.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
51.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
51.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
51.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
51.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
51.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
51.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
50.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
50.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
50.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
50.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
50.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
50.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
50.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
49.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
49.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
49.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
49.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
49.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
49.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
49.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
48.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
48.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
48.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
48.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
48.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
48.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
48.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
48.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
48.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
48.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
48.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
48.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
48.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
48.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
48.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
47.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
47.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
47.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
47.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
47.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
46.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
46.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
46.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
46.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
46.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
46.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
46.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
46.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
46.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
46.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
46.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
45.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
45.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
45.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
45.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
45.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
45.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
45.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
45.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
45.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
44.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
44.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
44.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
44.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
44.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
44.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
43.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
43.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
43.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
43.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
43.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
43.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
43.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
43.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
43.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
43.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
43.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
43.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
42.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
42.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
42.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
42.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
42.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
42.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
42.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
42.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
42.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
42.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
42.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
41.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
41.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
41.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
41.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
41.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
41.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
40.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
40.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
40.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
40.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
40.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
40.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
40.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
40.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
40.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
40.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
39.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
39.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
39.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
39.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
38.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
38.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
38.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
38.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
38.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
38.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
38.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
38.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
38.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
38.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
37.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
37.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
37.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
37.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
37.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
37.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
37.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
37.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
37.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
37.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
36.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
36.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
36.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
36.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
35.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
35.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
35.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
34.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
34.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
34.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
34.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
34.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
33.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
33.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
33.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
33.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
33.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
33.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
33.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
33.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
33.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
33.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
33.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
33.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
32.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
32.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
32.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
32.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
32.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
32.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
32.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
31.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
31.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
31.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
31.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
30.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
30.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
30.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
29.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
29.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
29.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
29.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
28.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
28.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
28.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
28.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
27.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
27.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
27.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
27.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
27.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
26.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
25.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
25.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
25.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
25.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
23.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
22.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
22.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
22.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
20.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
20.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
20.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
16.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMX2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
53.2
Number of samples
231
Samples
Sample
Description
TPM
DO45227
0 years, female, NA, stage:2, alive, 1020 days
145.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
137.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
129.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
114.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
113.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
108.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
103.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
100.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
98.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
94.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
89.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
89.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
87.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
85.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
83.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
83.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
83.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
81.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
80.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
80.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
79.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
77.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
77.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
76.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
75.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
75.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
73.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
73.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
73.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
72.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
72.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
71.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
71.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
71.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
71.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
69.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
68.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
68.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
68.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
68.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
68.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
67.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
67.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
66.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
65.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
65.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
65.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
65.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
65.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
64.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
64.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
64.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
64.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
63.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
63.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
63.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
63.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
63.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
62.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
62.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
62.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
62.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
62.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
61.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
61.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
61.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
61.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
59.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
59.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
59.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
59.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
59.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
58.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
58.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
58.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
57.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
57.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
57.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
57.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
57.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
56.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
56.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
56.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
56.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
55.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
54.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
54.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
54.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
54.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
54.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
54.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
53.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
53.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
53.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
53.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
53.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
52.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
52.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
52.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
52.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
51.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
51.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
51.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
51.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
51.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
51.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
50.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
50.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
50.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
50.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
50.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
50.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
50.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
49.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
49.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
49.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
49.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
49.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
49.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
49.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
48.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
48.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
48.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
48.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
48.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
48.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
48.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
48.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
47.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
47.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
47.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
47.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
47.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
47.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
46.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
46.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
46.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
46.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
46.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
46.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
45.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
45.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
45.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
45.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
45.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
45.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
44.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
44.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
44.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
44.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
44.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
43.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
43.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
43.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
43.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
43.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
43.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
42.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
42.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
42.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
42.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
42.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
42.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
42.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
42.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
42.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
42.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
41.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
41.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
41.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
41.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
40.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
40.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
40.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
39.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
39.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
39.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
38.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
38.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
38.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
38.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
38.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
38.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
38.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
37.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
37.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
37.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
37.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
37.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
36.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
35.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
35.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
35.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
35.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
35.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
35.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
34.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
34.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
34.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
33.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
33.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
32.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
32.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
32.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
32.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
32.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
32.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
32.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
31.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
31.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
31.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
31.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
31.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
30.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
29.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
29.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
28.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
28.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
28.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
27.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
26.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
25.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
25.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
25.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
25.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
24.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
24.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
24.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
23.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
22.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
341
Tumor
1.4
647
Tumor
1.2
435
Tumor
1.2
741
Tumor
1.0
411
Tumor
0.9
911
Tumor
0.9
615
Tumor
0.8
171
Tumor
0.8
1013
Tumor
0.8
227
Tumor
0.8
1027
Tumor
0.7
777
Tumor
0.7
491
Tumor
0.6
863
Tumor
0.6
981
Tumor
0.6
537
Tumor
0.5
925
Tumor
0.5
915
Tumor
0.5
861
Tumor
0.5
387
Tumor
0.5
481
Tumor
0.5
313
Tumor
0.5
635
Tumor
0.5
365
Tumor
0.5
123
Tumor
0.5
755
Tumor
0.4
571
Tumor
0.4
257
Tumor
0.4
137
Tumor
0.4
361
Tumor
0.4
517
Tumor
0.4
955
Tumor
0.4
147
Tumor
0.4
745
Tumor
0.4
388
Normal
0.3
128
Normal
0.3
568
Normal
0.3
363
Tumor
0.3
957
Tumor
0.3
515
Tumor
0.3
665
Tumor
0.3
953
Tumor
0.3
1015
Tumor
0.3
513
Tumor
0.2
563
Tumor
0.2
127
Tumor
0.2
353
Tumor
0.2
785
Tumor
0.2
574
Normal
0.2
533
Tumor
0.2
368
Normal
0.2
867
Tumor
0.2
376
Normal
0.2
527
Tumor
0.2
977
Tumor
0.2
963
Tumor
0.2
366
Normal
0.2
314
Normal
0.2
573
Tumor
0.2
477
Tumor
0.2
727
Tumor
0.2
525
Tumor
0.2
342
Normal
0.2
873
Tumor
0.2
737
Tumor
0.1
228
Normal
0.1
862
Normal
0.1
196
Normal
0.1
172
Normal
0.1
452
Normal
0.1
564
Normal
0.1
535
Tumor
0.1
648
Normal
0.1
332
Normal
0.1
114
Normal
0.1
698
Normal
0.1
685
Tumor
0.1
516
Normal
0.1
125
Tumor
0.1
462
Normal
0.1
355
Tumor
0.1
448
Normal
0.1
362
Normal
0.1
923
Tumor
0.1
357
Tumor
0.1
1021
Tumor
0.1
111
Normal
0.1
922
Normal
0.1
396
Normal
0.1
436
Normal
0.1
446
Normal
0.1
392
Normal
0.1
956
Normal
0.1
212
Normal
0.1
523
Tumor
0.1
938
Normal
0.1
866
Normal
0.1
868
Normal
0.1
412
Normal
0.1
466
Normal
0.1
286
Normal
0.1
786
Normal
0.1
746
Normal
0.1
455
Tumor
0.1
484
Normal
0.1
1045
Tumor
0.1
695
Tumor
0.1
744
Normal
0.0
567
Tumor
0.0
354
Normal
0.0
386
Normal
0.0
1043
Tumor
0.0
356
Normal
0.0
331
Tumor
0.0
967
Tumor
0.0
297
Tumor
0.0
231
Tumor
0.0
518
Normal
0.0
427
Tumor
0.0
358
Normal
0.0
697
Tumor
0.0
482
Normal
0.0
672
Normal
0.0
213
Tumor
0.0
952
Normal
0.0
222
Normal
0.0
211
Tumor
0.0
223
Tumor
0.0
124
Normal
0.0
132
Normal
0.0
258
Normal
0.0
546
Normal
0.0
465
Tumor
0.0
145
Tumor
0.0
451
Tumor
0.0
423
Tumor
0.0
278
Normal
0.0
864
Normal
0.0
232
Normal
0.0
261
Tumor
0.0
944
Normal
0.0
878
Normal
0.0
713
Tumor
0.0
968
Normal
0.0
728
Normal
0.0
572
Normal
0.0
924
Normal
0.0
472
Normal
0.0
662
Normal
0.0
351
Tumor
0.0
142
Normal
0.0
126
Normal
0.0
432
Normal
0.0
384
Normal
0.0
214
Normal
0.0
375
Tumor
0.0
874
Normal
0.0
187
Tumor
0.0
284
Normal
0.0
191
Tumor
0.0
394
Normal
0.0
277
Tumor
0.0
298
Normal
0.0
913
Tumor
0.0
195
Tumor
0.0
464
Normal
0.0
474
Normal
0.0
272
Normal
0.0
742
Normal
0.0
148
Normal
0.0
138
Normal
0.0
141
Tumor
-0.1
526
Normal
-0.1
865
Tumor
-0.1
431
Tumor
-0.1
161
Tumor
-0.1
554
Normal
-0.1
367
Tumor
-0.1
344
Normal
-0.1
851
Tumor
-0.1
912
Normal
-0.1
327
Tumor
-0.1
497
Tumor
-0.1
817
Tumor
-0.1
224
Normal
-0.1
1022
Normal
-0.1
756
Normal
-0.1
425
Tumor
-0.1
468
Normal
-0.1
534
Normal
-0.1
964
Normal
-0.1
312
Normal
-0.1
1028
Normal
-0.1
738
Normal
-0.1
852
Normal
-0.1
483
Tumor
-0.1
364
Normal
-0.1
217
Tumor
-0.1
473
Tumor
-0.1
816
Normal
-0.1
456
Normal
-0.1
283
Tumor
-0.1
666
Normal
-0.1
722
Normal
-0.1
954
Normal
-0.1
135
Tumor
-0.1
882
Normal
-0.1
528
Normal
-0.1
434
Normal
-0.1
778
Normal
-0.1
664
Normal
-0.1
743
Tumor
-0.1
218
Normal
-0.1
918
Normal
-0.1
714
Normal
-0.1
824
Normal
-0.1
553
Tumor
-0.1
488
Normal
-0.1
395
Tumor
-0.1
328
Normal
-0.1
926
Normal
-0.1
958
Normal
-0.1
112
Tumor
-0.1
914
Normal
-0.1
1041
Tumor
-0.1
416
Normal
-0.2
976
Normal
-0.2
857
Tumor
-0.2
262
Normal
-0.2
686
Normal
-0.2
445
Tumor
-0.2
492
Normal
-0.2
494
Normal
-0.2
1046
Normal
-0.2
558
Normal
-0.2
393
Tumor
-0.2
696
Normal
-0.2
823
Tumor
-0.2
616
Normal
-0.2
192
Normal
-0.2
443
Tumor
-0.2
188
Normal
-0.2
422
Normal
-0.2
538
Normal
-0.2
426
Normal
-0.2
1016
Normal
-0.2
113
Tumor
-0.2
514
Normal
-0.2
162
Normal
-0.2
618
Normal
-0.2
716
Normal
-0.2
636
Normal
-0.2
424
Normal
-0.2
982
Normal
-0.2
921
Tumor
-0.2
858
Normal
-0.2
813
Tumor
-0.2
966
Normal
-0.2
671
Tumor
-0.2
461
Tumor
-0.2
421
Tumor
-0.2
721
Tumor
-0.2
186
Normal
-0.2
1044
Normal
-0.2
818
Normal
-0.2
1014
Normal
-0.2
916
Normal
-0.2
943
Tumor
-0.3
1026
Normal
-0.3
536
Normal
-0.3
524
Normal
-0.3
185
Tumor
-0.3
414
Normal
-0.3
444
Normal
-0.3
268
Normal
-0.3
984
Normal
-0.3
877
Tumor
-0.3
663
Tumor
-0.3
433
Tumor
-0.3
352
Normal
-0.3
557
Tumor
-0.3
267
Tumor
-0.3
1032
Normal
-0.3
343
Tumor
-0.3
642
Normal
-0.3
447
Tumor
-0.3
723
Tumor
-0.3
815
Tumor
-0.3
1025
Tumor
-0.3
136
Normal
-0.3
917
Tumor
-0.3
478
Normal
-0.3
415
Tumor
-0.3
221
Tumor
-0.3
1042
Normal
-0.3
385
Tumor
-0.3
493
Tumor
-0.3
884
Normal
-0.3
391
Tumor
-0.3
975
Tumor
-0.3
498
Normal
-0.4
715
Tumor
-0.4
661
Tumor
-0.4
428
Normal
-0.4
978
Normal
-0.4
965
Tumor
-0.4
627
Tumor
-0.4
146
Normal
-0.4
814
Normal
-0.4
937
Tumor
-0.4
487
Tumor
-0.4
413
Tumor
-0.4
724
Normal
-0.4
383
Tumor
-0.4
951
Tumor
-0.5
628
Normal
-0.5
545
Tumor
-0.5
285
Tumor
-0.5
271
Tumor
-0.5
471
Tumor
-0.5
983
Tumor
-0.5
467
Tumor
-0.5
463
Tumor
-0.5
1031
Tumor
-0.6
131
Tumor
-0.6
881
Tumor
-0.6
311
Tumor
-0.6
617
Tumor
-0.7
641
Tumor
-0.9
883
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
