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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SRA1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
33.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
21.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
20.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
20.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
20.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
19.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
18.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
18.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
17.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
16.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
16.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
16.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
16.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
15.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
15.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
15.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
15.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
15.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
15.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
15.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
15.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
15.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
14.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
14.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
14.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
14.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
13.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
13.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
12.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
12.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
11.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
11.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
11.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
10.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
9.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
9.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
9.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
9.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
8.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
8.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
8.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
8.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
7.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
7.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
6.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
6.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
6.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
6.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
6.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
6.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
5.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
5.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
5.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
5.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
5.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
5.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
5.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
5.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
5.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
5.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
4.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
4.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
3.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
3.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
3.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
2.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SRA1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
27.1
Number of samples
231
Samples
Sample
Description
TPM
DO23532
0 years, female, NA, stage:1, alive, 960 days
154.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
137.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
92.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
90.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
76.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
76.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
71.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
63.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
63.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
62.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
60.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
56.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
52.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
47.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
46.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
46.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
46.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
45.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
45.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
45.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
45.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
43.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
42.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
42.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
42.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
41.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
41.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
41.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
40.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
40.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
40.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
40.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
39.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
39.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
39.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
37.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
37.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
37.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
37.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
36.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
36.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
35.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
35.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
35.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
34.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
34.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
34.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
34.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
34.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
34.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
33.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
33.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
33.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
33.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
32.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
32.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
32.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
32.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
31.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
31.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
31.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
31.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
31.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
31.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
31.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
30.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
30.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
30.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
30.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
29.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
29.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
29.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
29.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
29.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
29.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
29.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
28.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
28.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
28.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
28.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
28.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
28.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
27.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
27.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
27.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
27.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
27.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
27.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
26.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
26.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
26.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
26.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
26.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
25.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
25.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
25.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
25.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
25.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
24.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
24.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
24.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
24.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
24.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
24.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
24.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
24.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
24.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
23.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
23.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
23.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
23.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
23.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
23.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
23.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
23.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
22.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
22.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
22.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
21.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
21.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
21.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
21.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
21.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
21.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
20.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
20.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
20.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
20.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
20.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
20.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
20.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
20.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
20.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
20.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
20.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
20.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
20.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
20.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
20.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
19.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
19.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
19.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
19.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
19.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
19.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
19.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
18.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
18.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
18.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
18.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
17.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
17.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
17.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
17.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
17.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
17.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
17.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
17.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
17.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
17.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
17.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
17.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
17.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
16.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
16.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
16.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
16.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
16.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
16.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
16.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
16.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
15.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
15.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
15.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
15.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
15.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
15.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
14.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
14.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
14.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
14.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
14.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
14.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
13.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
11.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
123
Tumor
1.1
635
Tumor
0.9
523
Tumor
0.9
353
Tumor
0.9
865
Tumor
0.8
571
Tumor
0.8
1013
Tumor
0.7
1027
Tumor
0.7
737
Tumor
0.7
355
Tumor
0.7
745
Tumor
0.6
777
Tumor
0.6
913
Tumor
0.6
533
Tumor
0.6
213
Tumor
0.6
497
Tumor
0.6
647
Tumor
0.6
861
Tumor
0.5
923
Tumor
0.5
1021
Tumor
0.5
925
Tumor
0.5
357
Tumor
0.5
277
Tumor
0.5
615
Tumor
0.5
135
Tumor
0.5
411
Tumor
0.5
937
Tumor
0.5
387
Tumor
0.5
465
Tumor
0.5
515
Tumor
0.5
267
Tumor
0.4
161
Tumor
0.4
223
Tumor
0.4
665
Tumor
0.4
141
Tumor
0.4
627
Tumor
0.4
361
Tumor
0.4
145
Tumor
0.4
574
Normal
0.4
327
Tumor
0.4
755
Tumor
0.4
953
Tumor
0.3
823
Tumor
0.3
455
Tumor
0.3
257
Tumor
0.3
957
Tumor
0.3
341
Tumor
0.3
617
Tumor
0.3
513
Tumor
0.3
573
Tumor
0.3
365
Tumor
0.3
564
Normal
0.3
663
Tumor
0.3
456
Normal
0.3
195
Tumor
0.3
563
Tumor
0.3
432
Normal
0.3
383
Tumor
0.3
147
Tumor
0.3
137
Tumor
0.2
443
Tumor
0.2
435
Tumor
0.2
221
Tumor
0.2
981
Tumor
0.2
567
Tumor
0.2
487
Tumor
0.2
1045
Tumor
0.2
572
Normal
0.2
863
Tumor
0.2
462
Normal
0.2
493
Tumor
0.2
477
Tumor
0.2
138
Normal
0.2
187
Tumor
0.2
661
Tumor
0.2
446
Normal
0.2
527
Tumor
0.2
867
Tumor
0.2
873
Tumor
0.2
557
Tumor
0.2
431
Tumor
0.2
721
Tumor
0.2
464
Normal
0.2
466
Normal
0.2
423
Tumor
0.2
921
Tumor
0.2
391
Tumor
0.2
1043
Tumor
0.2
132
Normal
0.2
375
Tumor
0.2
126
Normal
0.2
568
Normal
0.2
436
Normal
0.2
467
Tumor
0.2
553
Tumor
0.2
451
Tumor
0.2
386
Normal
0.2
388
Normal
0.1
642
Normal
0.1
481
Tumor
0.1
447
Tumor
0.1
977
Tumor
0.1
468
Normal
0.1
915
Tumor
0.1
868
Normal
0.1
395
Tumor
0.1
916
Normal
0.1
924
Normal
0.1
433
Tumor
0.1
261
Tumor
0.1
171
Tumor
0.1
1026
Normal
0.1
483
Tumor
0.1
881
Tumor
0.1
271
Tumor
0.1
452
Normal
0.1
1041
Tumor
0.1
641
Tumor
0.1
136
Normal
0.1
741
Tumor
0.1
222
Normal
0.1
912
Normal
0.1
351
Tumor
0.1
884
Normal
0.1
628
Normal
0.1
392
Normal
0.1
724
Normal
0.1
362
Normal
0.1
421
Tumor
0.1
955
Tumor
0.1
866
Normal
0.1
722
Normal
0.1
1046
Normal
0.0
298
Normal
0.0
444
Normal
0.0
525
Tumor
0.0
714
Normal
0.0
918
Normal
0.0
536
Normal
0.0
396
Normal
0.0
272
Normal
0.0
1042
Normal
0.0
482
Normal
0.0
554
Normal
0.0
426
Normal
0.0
228
Normal
0.0
463
Tumor
0.0
857
Tumor
0.0
966
Normal
0.0
786
Normal
0.0
558
Normal
0.0
366
Normal
0.0
146
Normal
0.0
363
Tumor
0.0
262
Normal
0.0
922
Normal
0.0
785
Tumor
0.0
538
Normal
0.0
911
Tumor
0.0
484
Normal
0.0
448
Normal
0.0
368
Normal
0.0
518
Normal
0.0
914
Normal
0.0
685
Tumor
0.0
983
Tumor
0.0
231
Tumor
0.0
114
Normal
0.0
342
Normal
0.0
716
Normal
0.0
862
Normal
0.0
824
Normal
0.0
965
Tumor
0.0
864
Normal
0.0
697
Tumor
0.0
1044
Normal
0.0
498
Normal
0.0
1022
Normal
0.0
124
Normal
0.0
1028
Normal
0.0
492
Normal
0.0
344
Normal
0.0
883
Tumor
0.0
258
Normal
0.0
394
Normal
0.0
111
Normal
0.0
816
Normal
0.0
227
Tumor
0.0
393
Tumor
0.0
698
Normal
0.0
328
Normal
0.0
424
Normal
0.0
616
Normal
0.0
494
Normal
0.0
528
Normal
0.0
313
Tumor
0.0
474
Normal
0.0
874
Normal
0.0
952
Normal
0.0
284
Normal
0.0
428
Normal
-0.1
1032
Normal
-0.1
412
Normal
-0.1
524
Normal
-0.1
367
Tumor
-0.1
434
Normal
-0.1
112
Tumor
-0.1
975
Tumor
-0.1
413
Tumor
-0.1
297
Tumor
-0.1
1025
Tumor
-0.1
517
Tumor
-0.1
926
Normal
-0.1
128
Normal
-0.1
113
Tumor
-0.1
188
Normal
-0.1
414
Normal
-0.1
546
Normal
-0.1
951
Tumor
-0.1
422
Normal
-0.1
636
Normal
-0.1
1016
Normal
-0.1
278
Normal
-0.1
938
Normal
-0.1
286
Normal
-0.1
218
Normal
-0.1
491
Tumor
-0.1
696
Normal
-0.1
882
Normal
-0.1
695
Tumor
-0.1
664
Normal
-0.1
723
Tumor
-0.1
746
Normal
-0.1
956
Normal
-0.1
662
Normal
-0.1
478
Normal
-0.1
212
Normal
-0.1
618
Normal
-0.1
878
Normal
-0.1
461
Tumor
-0.1
472
Normal
-0.1
185
Tumor
-0.1
526
Normal
-0.1
727
Tumor
-0.1
283
Tumor
-0.1
917
Tumor
-0.1
127
Tumor
-0.1
858
Normal
-0.1
376
Normal
-0.1
358
Normal
-0.1
196
Normal
-0.1
851
Tumor
-0.1
268
Normal
-0.1
191
Tumor
-0.1
814
Normal
-0.1
963
Tumor
-0.1
384
Normal
-0.1
852
Normal
-0.1
666
Normal
-0.1
743
Tumor
-0.1
728
Normal
-0.1
738
Normal
-0.1
214
Normal
-0.1
186
Normal
-0.1
516
Normal
-0.1
944
Normal
-0.1
968
Normal
-0.1
314
Normal
-0.1
364
Normal
-0.1
217
Tumor
-0.2
232
Normal
-0.2
648
Normal
-0.2
514
Normal
-0.2
713
Tumor
-0.2
537
Tumor
-0.2
982
Normal
-0.2
415
Tumor
-0.2
285
Tumor
-0.2
224
Normal
-0.2
976
Normal
-0.2
954
Normal
-0.2
488
Normal
-0.2
425
Tumor
-0.2
148
Normal
-0.2
744
Normal
-0.2
545
Tumor
-0.2
331
Tumor
-0.2
672
Normal
-0.2
686
Normal
-0.2
978
Normal
-0.2
352
Normal
-0.2
385
Tumor
-0.2
427
Tumor
-0.2
416
Normal
-0.2
162
Normal
-0.2
778
Normal
-0.2
354
Normal
-0.2
756
Normal
-0.2
142
Normal
-0.2
471
Tumor
-0.2
535
Tumor
-0.2
964
Normal
-0.2
742
Normal
-0.2
1014
Normal
-0.2
1031
Tumor
-0.2
332
Normal
-0.3
818
Normal
-0.3
356
Normal
-0.3
534
Normal
-0.3
958
Normal
-0.3
312
Normal
-0.3
877
Tumor
-0.3
943
Tumor
-0.3
813
Tumor
-0.3
984
Normal
-0.3
473
Tumor
-0.3
211
Tumor
-0.3
172
Normal
-0.3
815
Tumor
-0.3
671
Tumor
-0.3
445
Tumor
-0.3
125
Tumor
-0.4
311
Tumor
-0.4
192
Normal
-0.5
967
Tumor
-0.5
715
Tumor
-0.5
1015
Tumor
-0.5
817
Tumor
-0.5
131
Tumor
-0.6
343
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
