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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GBP7 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
135.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
83.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
82.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
82.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
80.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
75.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
74.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
74.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
72.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
71.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
68.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
68.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
68.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
65.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
57.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
55.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
54.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
51.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
51.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
51.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
51.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
50.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
48.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
47.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
47.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
47.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
47.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
44.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
42.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
42.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
41.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
41.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
40.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
38.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
37.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
37.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
36.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
36.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
36.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
35.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
35.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
35.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
35.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
35.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
35.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
33.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
33.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
32.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
32.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
32.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
31.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
31.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
31.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
31.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
30.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
30.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
29.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
29.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
28.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
28.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
27.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
26.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
26.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
26.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
25.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
25.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
25.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
25.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
25.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
25.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
25.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
24.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
24.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
24.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
24.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
24.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
23.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
23.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
23.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
22.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
22.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
22.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
21.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
21.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
21.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
20.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
20.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
20.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
20.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
20.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
19.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
19.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
19.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
18.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
18.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
18.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
18.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
18.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
18.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
18.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
17.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
17.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
17.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
16.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
16.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
16.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
16.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
16.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
15.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
15.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
15.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
14.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
14.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
14.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
14.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
12.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
12.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
12.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
11.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
6.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
6.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
4.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
4.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
4.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
3.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
3.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
2.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
2.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
2.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
2.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
2.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
2.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
2.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
2.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
1.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
1.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
1.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
1.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
1.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
1.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
1.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
0.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GBP7 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.0
Number of samples
231
Samples
Sample
Description
TPM
DO45115
0 years, male, NA, stage:2, alive, 840 days
107.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
104.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
90.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
84.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
73.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
71.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
70.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
64.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
63.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
61.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
58.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
54.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
53.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
53.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
51.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
51.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
48.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
45.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
45.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
45.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
45.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
44.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
44.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
42.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
42.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
41.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
41.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
40.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
39.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
39.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
39.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
39.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
38.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
38.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
37.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
37.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
36.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
36.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
35.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
35.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
35.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
33.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
33.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
31.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
31.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
31.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
30.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
30.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
29.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
28.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
27.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
27.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
27.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
27.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
27.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
26.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
26.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
25.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
25.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
24.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
24.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
24.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
23.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
23.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
23.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
23.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
23.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
23.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
23.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
22.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
22.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
22.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
21.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
21.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
21.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
20.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
20.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
20.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
19.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
19.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
19.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
19.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
19.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
19.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
18.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
18.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
18.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
18.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
18.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
17.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
17.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
17.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
17.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
17.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
16.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
16.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
16.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
16.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
15.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
14.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
8.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
8.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
5.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
4.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
4.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
3.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
3.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
3.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
3.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
2.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
2.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
2.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
2.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
2.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
2.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
2.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
1.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
1.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
1.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
1.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
1.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
1.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
1.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
1.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
1.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
1.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
1.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
1.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
1.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
1.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
777
Tumor
1.8
141
Tumor
1.6
913
Tumor
1.3
113
Tumor
1.2
937
Tumor
1.1
1045
Tumor
1.1
695
Tumor
1.0
533
Tumor
0.9
865
Tumor
0.9
755
Tumor
0.9
647
Tumor
0.9
383
Tumor
0.8
818
Normal
0.8
465
Tumor
0.8
953
Tumor
0.8
824
Normal
0.7
434
Normal
0.7
627
Tumor
0.7
147
Tumor
0.7
882
Normal
0.7
481
Tumor
0.7
778
Normal
0.7
436
Normal
0.7
446
Normal
0.7
952
Normal
0.7
618
Normal
0.7
938
Normal
0.7
482
Normal
0.7
515
Tumor
0.6
926
Normal
0.6
262
Normal
0.6
716
Normal
0.6
648
Normal
0.6
628
Normal
0.6
957
Tumor
0.6
467
Tumor
0.6
866
Normal
0.6
955
Tumor
0.6
195
Tumor
0.6
978
Normal
0.6
1015
Tumor
0.6
416
Normal
0.5
696
Normal
0.5
968
Normal
0.5
414
Normal
0.5
224
Normal
0.5
724
Normal
0.5
546
Normal
0.5
145
Tumor
0.5
123
Tumor
0.5
1046
Normal
0.5
161
Tumor
0.5
966
Normal
0.5
534
Normal
0.5
1022
Normal
0.5
1013
Tumor
0.5
756
Normal
0.5
415
Tumor
0.5
196
Normal
0.5
136
Normal
0.5
728
Normal
0.5
428
Normal
0.5
411
Tumor
0.5
914
Normal
0.4
662
Normal
0.4
462
Normal
0.4
956
Normal
0.4
492
Normal
0.4
922
Normal
0.4
858
Normal
0.4
686
Normal
0.4
918
Normal
0.4
816
Normal
0.4
616
Normal
0.4
466
Normal
0.4
864
Normal
0.4
954
Normal
0.4
191
Tumor
0.4
358
Normal
0.4
786
Normal
0.3
982
Normal
0.3
874
Normal
0.3
187
Tumor
0.3
917
Tumor
0.3
128
Normal
0.3
666
Normal
0.3
944
Normal
0.3
852
Normal
0.3
426
Normal
0.3
477
Tumor
0.3
432
Normal
0.3
356
Normal
0.3
286
Normal
0.3
188
Normal
0.3
1044
Normal
0.3
327
Tumor
0.3
723
Tumor
0.3
1014
Normal
0.3
924
Normal
0.3
738
Normal
0.3
422
Normal
0.3
218
Normal
0.3
722
Normal
0.3
448
Normal
0.3
785
Tumor
0.3
642
Normal
0.3
186
Normal
0.3
384
Normal
0.3
526
Normal
0.3
884
Normal
0.3
721
Tumor
0.2
663
Tumor
0.2
124
Normal
0.2
513
Tumor
0.2
396
Normal
0.2
284
Normal
0.2
714
Normal
0.2
516
Normal
0.2
468
Normal
0.2
568
Normal
0.2
574
Normal
0.2
572
Normal
0.2
461
Tumor
0.2
958
Normal
0.2
456
Normal
0.2
868
Normal
0.2
814
Normal
0.2
364
Normal
0.2
615
Tumor
0.2
472
Normal
0.2
1042
Normal
0.2
1032
Normal
0.2
258
Normal
0.2
162
Normal
0.2
222
Normal
0.2
272
Normal
0.2
1016
Normal
0.2
672
Normal
0.2
1028
Normal
0.2
355
Tumor
0.2
636
Normal
0.1
878
Normal
0.1
1031
Tumor
0.1
342
Normal
0.1
142
Normal
0.1
925
Tumor
0.1
538
Normal
0.1
423
Tumor
0.1
362
Normal
0.1
518
Normal
0.1
464
Normal
0.1
494
Normal
0.1
744
Normal
0.1
536
Normal
0.1
742
Normal
0.1
857
Tumor
0.1
943
Tumor
0.1
524
Normal
0.1
528
Normal
0.1
1026
Normal
0.1
412
Normal
0.1
137
Tumor
0.1
217
Tumor
0.1
172
Normal
0.1
474
Normal
0.1
114
Normal
0.1
977
Tumor
0.1
912
Normal
0.1
138
Normal
0.1
111
Normal
0.0
146
Normal
0.0
395
Tumor
0.0
126
Normal
0.0
132
Normal
0.0
1027
Tumor
0.0
213
Tumor
0.0
424
Normal
0.0
148
Normal
0.0
514
Normal
0.0
185
Tumor
0.0
664
Normal
0.0
493
Tumor
0.0
445
Tumor
0.0
746
Normal
0.0
368
Normal
0.0
484
Normal
0.0
863
Tumor
0.0
192
Normal
-0.1
365
Tumor
-0.1
376
Normal
-0.1
427
Tumor
-0.1
232
Normal
-0.1
981
Tumor
-0.1
964
Normal
-0.1
394
Normal
-0.1
298
Normal
-0.1
443
Tumor
-0.1
984
Normal
-0.1
916
Normal
-0.1
354
Normal
-0.1
112
Tumor
-0.1
366
Normal
-0.1
392
Normal
-0.1
478
Normal
-0.1
915
Tumor
-0.1
525
Tumor
-0.1
328
Normal
-0.1
873
Tumor
-0.1
452
Normal
-0.1
564
Normal
-0.2
617
Tumor
-0.2
357
Tumor
-0.2
261
Tumor
-0.2
727
Tumor
-0.2
352
Normal
-0.2
375
Tumor
-0.2
563
Tumor
-0.2
332
Normal
-0.2
388
Normal
-0.2
867
Tumor
-0.2
823
Tumor
-0.2
223
Tumor
-0.2
228
Normal
-0.2
554
Normal
-0.2
344
Normal
-0.3
386
Normal
-0.3
314
Normal
-0.3
447
Tumor
-0.3
214
Normal
-0.3
341
Tumor
-0.4
387
Tumor
-0.4
951
Tumor
-0.4
312
Normal
-0.4
353
Tumor
-0.4
421
Tumor
-0.4
487
Tumor
-0.4
911
Tumor
-0.4
491
Tumor
-0.4
451
Tumor
-0.4
455
Tumor
-0.4
698
Normal
-0.5
431
Tumor
-0.5
433
Tumor
-0.5
862
Normal
-0.5
813
Tumor
-0.5
923
Tumor
-0.5
523
Tumor
-0.5
741
Tumor
-0.5
425
Tumor
-0.5
278
Normal
-0.5
535
Tumor
-0.5
361
Tumor
-0.5
311
Tumor
-0.5
444
Normal
-0.5
297
Tumor
-0.5
283
Tumor
-0.6
1043
Tumor
-0.6
571
Tumor
-0.6
851
Tumor
-0.6
313
Tumor
-0.6
661
Tumor
-0.6
976
Normal
-0.6
135
Tumor
-0.6
483
Tumor
-0.6
127
Tumor
-0.6
231
Tumor
-0.6
212
Normal
-0.6
488
Normal
-0.7
1041
Tumor
-0.7
268
Normal
-0.7
861
Tumor
-0.7
883
Tumor
-0.7
473
Tumor
-0.7
257
Tumor
-0.7
435
Tumor
-0.7
498
Normal
-0.7
713
Tumor
-0.8
125
Tumor
-0.8
745
Tumor
-0.8
471
Tumor
-0.8
393
Tumor
-0.8
267
Tumor
-0.8
877
Tumor
-0.8
1021
Tumor
-0.8
553
Tumor
-0.8
697
Tumor
-0.8
665
Tumor
-0.8
1025
Tumor
-0.8
967
Tumor
-0.9
211
Tumor
-0.9
921
Tumor
-0.9
413
Tumor
-0.9
737
Tumor
-0.9
463
Tumor
-0.9
385
Tumor
-0.9
881
Tumor
-0.9
537
Tumor
-0.9
685
Tumor
-0.9
343
Tumor
-0.9
363
Tumor
-0.9
671
Tumor
-0.9
558
Normal
-0.9
983
Tumor
-0.9
367
Tumor
-0.9
545
Tumor
-1.0
271
Tumor
-1.0
573
Tumor
-1.1
715
Tumor
-1.1
497
Tumor
-1.1
391
Tumor
-1.2
635
Tumor
-1.2
517
Tumor
-1.2
277
Tumor
-1.2
975
Tumor
-1.2
557
Tumor
-1.2
641
Tumor
-1.3
817
Tumor
-1.3
221
Tumor
-1.3
963
Tumor
-1.3
815
Tumor
-1.4
567
Tumor
-1.4
527
Tumor
-1.4
227
Tumor
-1.5
131
Tumor
-1.6
965
Tumor
-1.6
171
Tumor
-1.7
285
Tumor
-1.7
351
Tumor
-1.7
331
Tumor
-1.8
743
Tumor
-2.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
