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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NRAS is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
71.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
46.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
44.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
39.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
39.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
38.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
37.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
37.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
36.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
35.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
34.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
33.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
33.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
32.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
32.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
30.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
30.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
29.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
29.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
27.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
27.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
26.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
26.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
25.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
25.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
25.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
24.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
24.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
23.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
23.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
23.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
23.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
22.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
22.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
22.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
22.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
22.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
22.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
22.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
21.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
21.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
21.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
21.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
20.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
20.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
20.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
20.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
20.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
19.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
19.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
19.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
19.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
18.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
18.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
18.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
18.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
18.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
18.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
18.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
17.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
17.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
17.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
17.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
17.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
17.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
17.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
17.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
17.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
17.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
17.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
16.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
16.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
16.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
16.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
16.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
16.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
15.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
15.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
15.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
15.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
15.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
15.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
15.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
15.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
15.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
14.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
14.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
14.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
14.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
14.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
14.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
14.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
14.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
13.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
13.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
13.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
13.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
13.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
12.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
12.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
12.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
12.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
10.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NRAS is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.5
Number of samples
231
Samples
Sample
Description
TPM
DO45119
0 years, male, NA, stage:3, dead, 510 days
54.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
40.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
35.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
35.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
35.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
34.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
34.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
31.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
31.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
29.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
28.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
28.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
28.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
27.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
25.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
25.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
25.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
25.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
25.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
24.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
24.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
24.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
24.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
24.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
24.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
23.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
23.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
23.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
23.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
23.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
23.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
22.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
22.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
22.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
21.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
21.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
21.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
21.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
21.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
21.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
21.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
21.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
20.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
20.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
20.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
20.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
20.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
20.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
19.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
19.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
19.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
19.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
19.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
18.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
18.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
18.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
18.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
18.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
18.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
18.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
18.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
18.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
18.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
17.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
17.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
17.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
17.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
17.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
16.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
16.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
16.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
16.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
16.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
15.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
15.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
15.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
14.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
13.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
13.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
13.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
13.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
13.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
13.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
12.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
12.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
12.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
12.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
12.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
11.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
10.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
10.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
535
Tumor
1.4
553
Tumor
0.4
1025
Tumor
0.4
517
Tumor
0.4
685
Tumor
0.4
698
Normal
0.4
737
Tumor
0.3
617
Tumor
0.3
482
Normal
0.3
425
Tumor
0.3
448
Normal
0.3
938
Normal
0.3
477
Tumor
0.3
727
Tumor
0.3
922
Normal
0.3
391
Tumor
0.3
127
Tumor
0.2
472
Normal
0.2
958
Normal
0.2
537
Tumor
0.2
944
Normal
0.2
478
Normal
0.2
112
Tumor
0.2
924
Normal
0.2
963
Tumor
0.2
1022
Normal
0.2
824
Normal
0.2
954
Normal
0.2
976
Normal
0.2
131
Tumor
0.2
967
Tumor
0.2
387
Tumor
0.2
412
Normal
0.2
695
Tumor
0.2
873
Tumor
0.2
231
Tumor
0.2
363
Tumor
0.2
964
Normal
0.2
356
Normal
0.2
546
Normal
0.2
738
Normal
0.2
554
Normal
0.2
912
Normal
0.2
196
Normal
0.2
715
Tumor
0.2
1046
Normal
0.2
952
Normal
0.2
435
Tumor
0.2
1014
Normal
0.2
1032
Normal
0.2
516
Normal
0.2
723
Tumor
0.2
524
Normal
0.2
1026
Normal
0.1
851
Tumor
0.1
364
Normal
0.1
413
Tumor
0.1
862
Normal
0.1
756
Normal
0.1
394
Normal
0.1
818
Normal
0.1
742
Normal
0.1
474
Normal
0.1
415
Tumor
0.1
528
Normal
0.1
878
Normal
0.1
926
Normal
0.1
361
Tumor
0.1
968
Normal
0.1
525
Tumor
0.1
728
Normal
0.1
148
Normal
0.1
142
Normal
0.1
132
Normal
0.1
1044
Normal
0.1
863
Tumor
0.1
514
Normal
0.1
716
Normal
0.1
572
Normal
0.1
128
Normal
0.1
746
Normal
0.1
714
Normal
0.1
481
Tumor
0.1
696
Normal
0.1
568
Normal
0.1
778
Normal
0.1
813
Tumor
0.1
951
Tumor
0.1
1028
Normal
0.1
222
Normal
0.1
342
Normal
0.1
864
Normal
0.1
228
Normal
0.1
956
Normal
0.1
513
Tumor
0.1
392
Normal
0.1
914
Normal
0.1
966
Normal
0.1
344
Normal
0.1
526
Normal
0.1
376
Normal
0.1
918
Normal
0.1
462
Normal
0.1
744
Normal
0.1
741
Tumor
0.1
538
Normal
0.1
232
Normal
0.1
436
Normal
0.1
536
Normal
0.1
1045
Tumor
0.1
1016
Normal
0.1
388
Normal
0.1
982
Normal
0.1
665
Tumor
0.1
984
Normal
0.1
487
Tumor
0.1
298
Normal
0.1
786
Normal
0.1
867
Tumor
0.1
937
Tumor
0.1
1041
Tumor
0.1
857
Tumor
0.1
162
Normal
0.1
648
Normal
0.1
943
Tumor
0.1
534
Normal
0.1
884
Normal
0.1
432
Normal
0.1
518
Normal
0.1
431
Tumor
0.1
662
Normal
0.1
328
Normal
0.1
185
Tumor
0.1
452
Normal
0.1
527
Tumor
0.0
666
Normal
0.0
722
Normal
0.0
314
Normal
0.0
186
Normal
0.0
955
Tumor
0.0
911
Tumor
0.0
868
Normal
0.0
558
Normal
0.0
618
Normal
0.0
664
Normal
0.0
745
Tumor
0.0
628
Normal
0.0
341
Tumor
0.0
171
Tumor
0.0
416
Normal
0.0
267
Tumor
0.0
286
Normal
0.0
815
Tumor
0.0
212
Normal
0.0
816
Normal
0.0
1042
Normal
0.0
484
Normal
0.0
396
Normal
0.0
456
Normal
0.0
523
Tumor
0.0
916
Normal
0.0
192
Normal
0.0
414
Normal
0.0
858
Normal
0.0
368
Normal
0.0
466
Normal
0.0
724
Normal
0.0
1027
Tumor
0.0
852
Normal
0.0
468
Normal
0.0
686
Normal
0.0
434
Normal
0.0
258
Normal
0.0
866
Normal
0.0
488
Normal
0.0
332
Normal
0.0
386
Normal
0.0
366
Normal
0.0
874
Normal
0.0
138
Normal
0.0
358
Normal
0.0
465
Tumor
0.0
221
Tumor
0.0
574
Normal
0.0
925
Tumor
0.0
616
Normal
0.0
214
Normal
0.0
172
Normal
0.0
136
Normal
0.0
915
Tumor
0.0
464
Normal
0.0
146
Normal
0.0
446
Normal
0.0
861
Tumor
0.0
865
Tumor
0.0
965
Tumor
0.0
111
Normal
0.0
433
Tumor
0.0
882
Normal
0.0
571
Tumor
0.0
426
Normal
0.0
424
Normal
0.0
113
Tumor
0.0
224
Normal
0.0
483
Tumor
0.0
473
Tumor
0.0
444
Normal
0.0
636
Normal
0.0
227
Tumor
0.0
978
Normal
0.0
272
Normal
0.0
672
Normal
0.0
671
Tumor
0.0
563
Tumor
-0.1
362
Normal
-0.1
187
Tumor
-0.1
494
Normal
-0.1
461
Tumor
-0.1
423
Tumor
-0.1
278
Normal
-0.1
283
Tumor
-0.1
814
Normal
-0.1
981
Tumor
-0.1
145
Tumor
-0.1
451
Tumor
-0.1
445
Tumor
-0.1
1021
Tumor
-0.1
135
Tumor
-0.1
124
Normal
-0.1
147
Tumor
-0.1
663
Tumor
-0.1
917
Tumor
-0.1
498
Normal
-0.1
284
Normal
-0.1
188
Normal
-0.1
977
Tumor
-0.1
471
Tumor
-0.1
223
Tumor
-0.1
957
Tumor
-0.1
647
Tumor
-0.1
492
Normal
-0.1
125
Tumor
-0.1
191
Tumor
-0.1
721
Tumor
-0.1
262
Normal
-0.1
823
Tumor
-0.1
428
Normal
-0.1
642
Normal
-0.1
126
Normal
-0.1
352
Normal
-0.1
421
Tumor
-0.1
447
Tumor
-0.1
1015
Tumor
-0.1
515
Tumor
-0.1
564
Normal
-0.1
384
Normal
-0.1
921
Tumor
-0.1
877
Tumor
-0.1
114
Normal
-0.1
713
Tumor
-0.1
367
Tumor
-0.1
261
Tumor
-0.1
493
Tumor
-0.1
422
Normal
-0.1
983
Tumor
-0.1
285
Tumor
-0.1
268
Normal
-0.1
297
Tumor
-0.2
467
Tumor
-0.2
354
Normal
-0.2
137
Tumor
-0.2
923
Tumor
-0.2
161
Tumor
-0.2
427
Tumor
-0.2
312
Normal
-0.2
615
Tumor
-0.2
393
Tumor
-0.2
218
Normal
-0.2
355
Tumor
-0.2
353
Tumor
-0.2
455
Tumor
-0.2
365
Tumor
-0.2
913
Tumor
-0.2
975
Tumor
-0.2
1013
Tumor
-0.2
195
Tumor
-0.2
497
Tumor
-0.2
351
Tumor
-0.2
491
Tumor
-0.2
217
Tumor
-0.2
463
Tumor
-0.2
661
Tumor
-0.2
327
Tumor
-0.2
697
Tumor
-0.2
953
Tumor
-0.2
817
Tumor
-0.2
755
Tumor
-0.2
395
Tumor
-0.2
1043
Tumor
-0.2
785
Tumor
-0.2
777
Tumor
-0.2
533
Tumor
-0.2
443
Tumor
-0.2
635
Tumor
-0.2
211
Tumor
-0.2
627
Tumor
-0.2
311
Tumor
-0.2
743
Tumor
-0.2
357
Tumor
-0.2
411
Tumor
-0.2
883
Tumor
-0.2
343
Tumor
-0.2
123
Tumor
-0.2
271
Tumor
-0.2
557
Tumor
-0.3
545
Tumor
-0.3
383
Tumor
-0.3
567
Tumor
-0.3
257
Tumor
-0.3
141
Tumor
-0.3
641
Tumor
-0.4
213
Tumor
-0.4
385
Tumor
-0.4
881
Tumor
-0.4
1031
Tumor
-0.4
573
Tumor
-0.4
331
Tumor
-0.4
313
Tumor
-0.5
375
Tumor
-0.5
277
Tumor
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
