MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:50.2 nTPM
HPA Brain:35.2 nTPM
GTEx:50.2 nTPM
FANTOM5:53.8 Scaled Tags Per Million
Pig:18.0 nTPM
Mouse:99.1 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 35.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.1
2019 Male, age 18, unknown 37.2
2666 Male, age 74, left hemisphere 32.1
2219 Male, age 76, both hemispheres 31.4
1833 Male, age 53, unknown 31.0
1827 Male, age 72, unknown 30.5
1870 Female, age 42, unknown 28.9
2828 Female, age 72, unknown 28.8
2411 Female, age 72, unknown 28.6
1830 Male, age 51, unknown 28.5
2586 Male, age 75, left hemisphere 24.3
Dorsal raphe nucleus
nTPM: 32.0
2298 Female, age 72, unknown 38.0
1828 Male, age 53, unknown 32.7
2750 Male, age 76, both hemispheres 30.2
2047 Male, age 72, unknown 30.0
2016 Female, age 72, unknown 29.1
Inferior colliculus
nTPM: 31.1
2097 Female, age 72, unknown 33.6
1890 Male, age 53, unknown 31.0
1848 Female, age 42, unknown 30.7
2849 Male, age 72, unknown 29.1
Median raphe nucleus
nTPM: 34.7
2220 Male, age 76, midline 34.7
Periaquaductal grey, anterior
nTPM: 33.6
2502 Female, age 75, unknown 35.7
1947 Male, age 18, unknown 32.6
1795 Male, age 51, unknown 32.5
Periaquaductal grey, dorsal
nTPM: 29.0
2850 Male, age 76, both hemispheres 31.8
1831 Male, age 72, unknown 29.1
2464 Female, age 72, unknown 28.0
1840 Male, age 53, unknown 27.2
Periaquaductal grey, lateral
nTPM: 32.4
2272 Male, age 74, both hemispheres 38.0
2140 Male, age 76, both hemispheres 30.1
2053 Male, age 18, unknown 29.1
Pretectal area
nTPM: 35.2
1816 Male, age 51, unknown 41.6
1817 Female, age 42, unknown 40.3
2007 Male, age 72, unknown 40.2
1944 Female, age 72, unknown 39.6
2273 Male, age 74, both hemispheres 37.4
2667 Female, age 75, unknown 35.5
1815 Male, age 53, unknown 35.1
2224 Female, age 72, unknown 33.8
2825 Male, age 18, unknown 30.2
2316 Male, age 76, right hemisphere 29.5
2407 Male, age 75, both hemispheres 24.2
Red nucleus
nTPM: 30.2
1821 Female, age 72, unknown 35.8
2785 Male, age 18, unknown 34.7
1904 Male, age 53, unknown 33.1
2503 Female, age 72, unknown 30.7
1954 Female, age 42, unknown 30.5
2725 Female, age 75, unknown 30.4
1865 Male, age 51, unknown 30.3
2227 Male, age 72, unknown 30.0
2823 Male, age 76, right hemisphere 29.5
2769 Male, age 72, unknown 27.9
2588 Male, age 74, left hemisphere 26.5
2584 Male, age 75, left hemisphere 23.0
Substantia nigra
nTPM: 34.2
1916 Female, age 42, unknown 43.2
2409 Female, age 72, unknown 37.5
1851 Male, age 51, unknown 36.4
1889 Female, age 72, unknown 36.2
2241 Male, age 72, unknown 35.3
1941 Male, age 53, unknown 34.8
2665 Male, age 74, both hemispheres 34.2
2699 Male, age 18, unknown 31.1
2590 Female, age 75, unknown 28.3
2583 Male, age 75, right hemisphere 25.0
Superior colliculus
nTPM: 30.8
2087 Female, age 72, unknown 34.5
2668 Female, age 75, unknown 33.6
2587 Male, age 74, left hemisphere 31.8
1796 Male, age 53, unknown 31.6
2261 Male, age 18, unknown 30.7
1895 Male, age 76, right hemisphere 30.4
1995 Male, age 72, unknown 30.4
1913 Female, age 42, unknown 29.3
1839 Male, age 51, unknown 29.0
2664 Male, age 75, both hemispheres 27.2
Ventral tegmental area
nTPM: 32.1
2218 Male, age 76, both hemispheres 36.1
2410 Female, age 72, unknown 35.9
2223 Female, age 72, unknown 32.5
1915 Female, age 42, unknown 32.4
1942 Male, age 51, unknown 28.5
2021 Male, age 53, unknown 27.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 50.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 50.2
Samples: 139

Max nTPM: 84.8
Min nTPM: 32.8
Std nTPM: 9.3
Median nTPM: 48.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 84.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 74.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 72.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 72.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 71.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 68.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 68.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 68.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 68.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 67.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 67.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 53.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.8
FF:10158-103A5 76 years, female 53.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 18.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 17.3
Samples: 4

Max nTPM: 21.0
Min nTPM: 15.2
Sample A Female 21.0
Sample B Female 16.6
Sample C Male 16.2
Sample D Male 15.2
Midbrain
nTPM: 18.0
Samples: 4

Max nTPM: 20.2
Min nTPM: 17.0
Sample A Female 20.2
Sample B Female 17.0
Sample C Male 17.4
Sample D Male 17.5
Periaqueductal gray
nTPM: 16.6
Samples: 3

Max nTPM: 17.6
Min nTPM: 15.3
Sample B Female 16.9
Sample C Male 17.6
Sample D Male 15.3
Superior colliculi
nTPM: 16.8
Samples: 4

Max nTPM: 19.0
Min nTPM: 14.0
Sample A Female 19.0
Sample B Female 14.0
Sample C Male 16.2
Sample D Male 18.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 99.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 99.1
Samples: 4

Max nTPM: 111.1
Min nTPM: 89.3
Sample A Male 100.1
Sample B Male 96.0
Sample C Female 89.3
Sample D Female 111.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
69117044 Antisense, RP_050321_01_F06, Mouse strain C57BL/6J (56 days, male) 0.7

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