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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
34.9
nTPM
FANTOM5:
63.8
Scaled Tags Per Million
Pig:
70.3
nTPM
Mouse:
70.4
nTPM
Allen mouse:
4.2
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
34.9
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 30.1
2586
Male, age 75, left hemisphere
37.8
2019
Male, age 18, unknown
35.2
1827
Male, age 72, unknown
31.6
1870
Female, age 42, unknown
31.0
2411
Female, age 72, unknown
29.0
2828
Female, age 72, unknown
27.7
2666
Male, age 74, left hemisphere
27.5
1830
Male, age 51, unknown
27.4
1833
Male, age 53, unknown
27.2
2219
Male, age 76, both hemispheres
27.2
Dorsal raphe nucleus nTPM: 31.0
2298
Female, age 72, unknown
33.7
1828
Male, age 53, unknown
32.1
2047
Male, age 72, unknown
31.3
2750
Male, age 76, both hemispheres
29.3
2016
Female, age 72, unknown
28.8
Inferior colliculus nTPM: 34.9
2097
Female, age 72, unknown
38.3
1848
Female, age 42, unknown
33.8
1890
Male, age 53, unknown
33.8
2849
Male, age 72, unknown
33.7
Median raphe nucleus nTPM: 27.8
2220
Male, age 76, midline
27.8
Periaquaductal grey, anterior nTPM: 32.1
2502
Female, age 75, unknown
35.2
1947
Male, age 18, unknown
31.3
1795
Male, age 51, unknown
29.9
Periaquaductal grey, dorsal nTPM: 30.7
1840
Male, age 53, unknown
35.5
2850
Male, age 76, both hemispheres
30.4
2464
Female, age 72, unknown
29.1
1831
Male, age 72, unknown
27.9
Periaquaductal grey, lateral nTPM: 29.9
2272
Male, age 74, both hemispheres
31.5
2053
Male, age 18, unknown
29.4
2140
Male, age 76, both hemispheres
28.7
Pretectal area nTPM: 33.5
1816
Male, age 51, unknown
39.7
2007
Male, age 72, unknown
38.5
1817
Female, age 42, unknown
36.3
1944
Female, age 72, unknown
35.9
2224
Female, age 72, unknown
33.2
1815
Male, age 53, unknown
33.0
2273
Male, age 74, both hemispheres
32.9
2407
Male, age 75, both hemispheres
31.5
2667
Female, age 75, unknown
30.7
2825
Male, age 18, unknown
29.0
2316
Male, age 76, right hemisphere
27.8
Red nucleus nTPM: 28.2
2725
Female, age 75, unknown
32.1
2785
Male, age 18, unknown
31.3
2503
Female, age 72, unknown
30.2
1821
Female, age 72, unknown
29.5
2584
Male, age 75, left hemisphere
29.5
2769
Male, age 72, unknown
27.9
1904
Male, age 53, unknown
27.2
1954
Female, age 42, unknown
26.9
2227
Male, age 72, unknown
26.9
1865
Male, age 51, unknown
26.3
2588
Male, age 74, left hemisphere
25.8
2823
Male, age 76, right hemisphere
25.1
Substantia nigra nTPM: 32.3
1889
Female, age 72, unknown
36.0
2241
Male, age 72, unknown
35.2
1916
Female, age 42, unknown
35.1
2583
Male, age 75, right hemisphere
34.0
1941
Male, age 53, unknown
32.1
2665
Male, age 74, both hemispheres
31.9
2409
Female, age 72, unknown
31.8
1851
Male, age 51, unknown
31.1
2590
Female, age 75, unknown
28.8
2699
Male, age 18, unknown
26.9
Superior colliculus nTPM: 30.8
2261
Male, age 18, unknown
33.6
1839
Male, age 51, unknown
32.2
2664
Male, age 75, both hemispheres
32.0
1895
Male, age 76, right hemisphere
31.7
1796
Male, age 53, unknown
31.2
2087
Female, age 72, unknown
31.0
2587
Male, age 74, left hemisphere
30.6
2668
Female, age 75, unknown
29.7
1913
Female, age 42, unknown
29.1
1995
Male, age 72, unknown
27.3
Ventral tegmental area nTPM: 30.7
1942
Male, age 51, unknown
31.9
2223
Female, age 72, unknown
31.7
2218
Male, age 76, both hemispheres
31.3
2021
Male, age 53, unknown
30.0
2410
Female, age 72, unknown
30.0
1915
Female, age 42, unknown
29.4
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
70.4
Mouse sample
Sample description
nTPM
Midbrain nTPM: 70.4
Samples: 4
Max nTPM: 73.0
Min nTPM: 67.0
Sample A
Male
73.0
Sample B
Male
71.7
Sample C
Female
69.9
Sample D
Female
67.0
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
