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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DNAJC19 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
87.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
79.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
72.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
63.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
63.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
57.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
56.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
54.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
53.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
52.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
50.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
50.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
49.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
49.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
47.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
47.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
47.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
46.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
46.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
46.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
46.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
45.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
45.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
45.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
43.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
42.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
42.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
41.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
40.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
40.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
39.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
39.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
39.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
39.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
38.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
38.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
38.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
37.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
36.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
36.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
35.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
34.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
34.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
34.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
34.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
34.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
33.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
33.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
33.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
33.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
33.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
32.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
32.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
32.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
32.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
32.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
32.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
32.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
32.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
32.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
32.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
31.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
31.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
31.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
31.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
31.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
31.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
30.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
30.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
30.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
30.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
30.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
29.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
29.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
29.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
29.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
29.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
29.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
29.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
29.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
28.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
28.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
28.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
28.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
28.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
28.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
28.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
27.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
27.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
27.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
27.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
27.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
27.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
27.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
27.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
27.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
26.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
26.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
26.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
26.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
26.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
26.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
26.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
26.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
25.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
25.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
25.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
25.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
25.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
25.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
25.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
25.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
25.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
25.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
25.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
25.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
25.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
24.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
24.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
24.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
24.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
24.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
24.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
24.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
24.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
24.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
24.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
23.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
23.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
23.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
23.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
23.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
23.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
23.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
23.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
23.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
23.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
23.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
23.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
23.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
23.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
23.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
23.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
23.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
23.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
22.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
22.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
22.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
22.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
22.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
22.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
22.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
22.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
22.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
22.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
22.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
22.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
22.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
22.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
22.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
22.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
22.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
22.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
21.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
21.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
21.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
21.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
21.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
21.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
21.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
21.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
21.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
21.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
21.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
21.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
21.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
21.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
21.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
21.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
21.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
21.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
21.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
21.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
20.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
20.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
20.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
20.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
20.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
20.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
20.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
20.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
20.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
20.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
20.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
20.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
20.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
20.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
20.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
20.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
20.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
20.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
20.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
20.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
20.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
20.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
20.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
19.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
19.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
19.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
19.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
19.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
19.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
19.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
19.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
19.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
19.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
19.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
19.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
19.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
19.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
19.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
18.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
18.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
18.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
18.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
18.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
18.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
18.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
18.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
18.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
18.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
18.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
18.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
18.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
18.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
18.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
18.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
18.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
18.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
18.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
18.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
18.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
18.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
18.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
18.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
18.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
18.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
17.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
17.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
17.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
17.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
17.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
17.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
17.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
17.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
17.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
17.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
17.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
17.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
17.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
17.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
17.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
17.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
17.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
17.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
17.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
16.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
16.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
16.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
16.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
16.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
16.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
16.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
16.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
16.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
15.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
15.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
15.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
15.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
15.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
15.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
15.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
15.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
15.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
15.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
15.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
15.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
15.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
15.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
15.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
15.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
15.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
14.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
14.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
14.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
14.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
14.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
14.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
14.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
14.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
14.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
14.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
13.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
13.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
13.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
13.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
12.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
12.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
12.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
12.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
11.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
8.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
8.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DNAJC19 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.6
Number of samples
231
Samples
Sample
Description
TPM
DO23533
0 years, male, NA, stage:2, alive, 900 days
55.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
53.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
53.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
51.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
48.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
44.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
43.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
42.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
41.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
41.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
41.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
40.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
39.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
39.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
39.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
39.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
37.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
37.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
37.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
37.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
35.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
35.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
35.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
34.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
34.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
34.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
33.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
33.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
32.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
32.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
32.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
32.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
32.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
31.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
31.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
30.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
30.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
30.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
30.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
30.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
30.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
30.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
29.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
29.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
29.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
29.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
29.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
28.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
28.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
28.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
28.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
28.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
28.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
28.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
27.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
27.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
27.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
26.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
26.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
26.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
26.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
26.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
26.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
26.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
26.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
26.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
25.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
25.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
25.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
25.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
25.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
25.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
25.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
25.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
25.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
25.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
24.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
24.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
24.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
24.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
24.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
24.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
24.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
24.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
24.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
24.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
24.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
24.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
24.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
23.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
23.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
23.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
23.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
23.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
23.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
23.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
23.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
23.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
23.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
23.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
23.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
23.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
23.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
23.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
23.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
23.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
22.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
22.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
22.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
22.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
22.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
22.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
22.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
22.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
22.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
22.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
22.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
22.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
22.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
22.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
22.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
22.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
21.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
21.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
21.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
21.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
21.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
21.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
21.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
21.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
21.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
21.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
21.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
21.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
21.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
20.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
20.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
20.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
20.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
20.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
20.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
20.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
20.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
20.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
20.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
20.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
19.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
19.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
19.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
19.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
19.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
19.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
19.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
19.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
19.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
19.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
19.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
18.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
18.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
18.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
18.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
18.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
18.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
18.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
18.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
18.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
18.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
18.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
18.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
18.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
18.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
18.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
17.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
17.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
17.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
17.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
17.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
17.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
17.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
16.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
16.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
16.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
16.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
16.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
16.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
15.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
15.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
14.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
14.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
14.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
14.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
13.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
13.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
12.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
513
Tumor
1.7
915
Tumor
1.4
627
Tumor
1.3
465
Tumor
1.3
231
Tumor
1.2
431
Tumor
1.1
925
Tumor
1.1
937
Tumor
1.1
967
Tumor
1.1
665
Tumor
1.1
695
Tumor
1.0
515
Tumor
1.0
777
Tumor
1.0
981
Tumor
1.0
1013
Tumor
1.0
411
Tumor
0.9
227
Tumor
0.9
571
Tumor
0.9
663
Tumor
0.9
351
Tumor
0.8
473
Tumor
0.8
361
Tumor
0.8
365
Tumor
0.8
755
Tumor
0.8
171
Tumor
0.8
123
Tumor
0.8
615
Tumor
0.8
341
Tumor
0.8
525
Tumor
0.7
851
Tumor
0.7
977
Tumor
0.7
724
Normal
0.7
367
Tumor
0.7
553
Tumor
0.7
785
Tumor
0.7
523
Tumor
0.6
327
Tumor
0.6
535
Tumor
0.6
383
Tumor
0.6
537
Tumor
0.6
745
Tumor
0.6
191
Tumor
0.6
741
Tumor
0.6
957
Tumor
0.6
911
Tumor
0.5
477
Tumor
0.5
1027
Tumor
0.5
873
Tumor
0.5
865
Tumor
0.5
393
Tumor
0.5
557
Tumor
0.5
567
Tumor
0.5
913
Tumor
0.5
815
Tumor
0.4
127
Tumor
0.4
647
Tumor
0.4
487
Tumor
0.4
923
Tumor
0.4
983
Tumor
0.4
951
Tumor
0.4
328
Normal
0.4
435
Tumor
0.4
867
Tumor
0.4
461
Tumor
0.4
857
Tumor
0.3
697
Tumor
0.3
113
Tumor
0.3
353
Tumor
0.3
965
Tumor
0.3
355
Tumor
0.3
483
Tumor
0.3
563
Tumor
0.3
1041
Tumor
0.3
1045
Tumor
0.3
861
Tumor
0.3
363
Tumor
0.3
922
Normal
0.3
714
Normal
0.3
466
Normal
0.3
1021
Tumor
0.3
145
Tumor
0.3
395
Tumor
0.3
1025
Tumor
0.3
534
Normal
0.3
955
Tumor
0.3
433
Tumor
0.2
223
Tumor
0.2
685
Tumor
0.2
497
Tumor
0.2
161
Tumor
0.2
463
Tumor
0.2
451
Tumor
0.2
756
Normal
0.2
786
Normal
0.2
455
Tumor
0.2
331
Tumor
0.2
715
Tumor
0.2
924
Normal
0.2
297
Tumor
0.2
267
Tumor
0.2
921
Tumor
0.2
423
Tumor
0.2
823
Tumor
0.2
1043
Tumor
0.2
415
Tumor
0.2
221
Tumor
0.2
391
Tumor
0.2
376
Normal
0.1
568
Normal
0.1
648
Normal
0.1
636
Normal
0.1
953
Tumor
0.1
862
Normal
0.1
472
Normal
0.1
868
Normal
0.1
954
Normal
0.1
425
Tumor
0.1
722
Normal
0.1
964
Normal
0.1
356
Normal
0.1
938
Normal
0.1
818
Normal
0.1
554
Normal
0.1
723
Tumor
0.1
926
Normal
0.1
883
Tumor
0.1
1022
Normal
0.1
1015
Tumor
0.1
493
Tumor
0.1
1014
Normal
0.1
172
Normal
0.1
481
Tumor
0.1
746
Normal
0.1
447
Tumor
0.1
448
Normal
0.0
488
Normal
0.0
141
Tumor
0.0
1032
Normal
0.0
944
Normal
0.0
514
Normal
0.0
424
Normal
0.0
978
Normal
0.0
882
Normal
0.0
738
Normal
0.0
1031
Tumor
0.0
546
Normal
0.0
564
Normal
0.0
912
Normal
0.0
984
Normal
0.0
963
Tumor
0.0
436
Normal
0.0
394
Normal
0.0
285
Tumor
0.0
135
Tumor
0.0
728
Normal
0.0
558
Normal
0.0
713
Tumor
0.0
413
Tumor
0.0
416
Normal
0.0
517
Tumor
0.0
357
Tumor
0.0
368
Normal
0.0
666
Normal
0.0
616
Normal
0.0
982
Normal
0.0
642
Normal
0.0
824
Normal
0.0
518
Normal
0.0
1028
Normal
0.0
884
Normal
0.0
916
Normal
0.0
1026
Normal
0.0
618
Normal
0.0
686
Normal
0.0
866
Normal
0.0
737
Tumor
-0.1
864
Normal
-0.1
286
Normal
-0.1
278
Normal
-0.1
313
Tumor
-0.1
414
Normal
-0.1
186
Normal
-0.1
1046
Normal
-0.1
572
Normal
-0.1
918
Normal
-0.1
112
Tumor
-0.1
213
Tumor
-0.1
187
Tumor
-0.1
526
Normal
-0.1
452
Normal
-0.1
976
Normal
-0.1
462
Normal
-0.1
162
Normal
-0.1
813
Tumor
-0.1
491
Tumor
-0.1
232
Normal
-0.1
352
Normal
-0.1
384
Normal
-0.1
484
Normal
-0.1
727
Tumor
-0.1
128
Normal
-0.1
142
Normal
-0.1
222
Normal
-0.1
257
Tumor
-0.1
635
Tumor
-0.1
858
Normal
-0.1
388
Normal
-0.1
342
Normal
-0.1
277
Tumor
-0.1
742
Normal
-0.1
428
Normal
-0.1
474
Normal
-0.1
516
Normal
-0.1
492
Normal
-0.1
524
Normal
-0.1
364
Normal
-0.1
412
Normal
-0.1
816
Normal
-0.1
744
Normal
-0.1
396
Normal
-0.1
228
Normal
-0.1
628
Normal
-0.1
874
Normal
-0.1
1016
Normal
-0.1
958
Normal
-0.1
664
Normal
-0.1
344
Normal
-0.2
1044
Normal
-0.2
467
Tumor
-0.2
427
Tumor
-0.2
314
Normal
-0.2
422
Normal
-0.2
132
Normal
-0.2
426
Normal
-0.2
956
Normal
-0.2
464
Normal
-0.2
421
Tumor
-0.2
914
Normal
-0.2
124
Normal
-0.2
538
Normal
-0.2
698
Normal
-0.2
443
Tumor
-0.2
385
Tumor
-0.2
354
Normal
-0.2
716
Normal
-0.2
217
Tumor
-0.2
195
Tumor
-0.2
494
Normal
-0.2
574
Normal
-0.2
696
Normal
-0.2
573
Tumor
-0.2
137
Tumor
-0.2
778
Normal
-0.2
536
Normal
-0.2
528
Normal
-0.2
298
Normal
-0.2
332
Normal
-0.2
214
Normal
-0.2
136
Normal
-0.2
482
Normal
-0.2
863
Tumor
-0.2
196
Normal
-0.2
877
Tumor
-0.2
392
Normal
-0.2
147
Tumor
-0.2
966
Normal
-0.2
952
Normal
-0.2
527
Tumor
-0.2
672
Normal
-0.3
148
Normal
-0.3
468
Normal
-0.3
968
Normal
-0.3
721
Tumor
-0.3
284
Normal
-0.3
852
Normal
-0.3
224
Normal
-0.3
498
Normal
-0.3
366
Normal
-0.3
138
Normal
-0.3
358
Normal
-0.3
878
Normal
-0.3
743
Tumor
-0.3
312
Normal
-0.3
387
Tumor
-0.3
114
Normal
-0.3
218
Normal
-0.3
814
Normal
-0.3
131
Tumor
-0.3
111
Normal
-0.3
211
Tumor
-0.3
362
Normal
-0.3
545
Tumor
-0.3
662
Normal
-0.3
432
Normal
-0.4
212
Normal
-0.4
446
Normal
-0.4
943
Tumor
-0.4
258
Normal
-0.4
881
Tumor
-0.4
1042
Normal
-0.4
533
Tumor
-0.4
671
Tumor
-0.4
456
Normal
-0.4
375
Tumor
-0.4
126
Normal
-0.5
471
Tumor
-0.5
478
Normal
-0.5
271
Tumor
-0.5
125
Tumor
-0.5
268
Normal
-0.5
445
Tumor
-0.5
975
Tumor
-0.5
272
Normal
-0.5
386
Normal
-0.5
146
Normal
-0.5
185
Tumor
-0.5
817
Tumor
-0.6
261
Tumor
-0.6
434
Normal
-0.6
444
Normal
-0.6
192
Normal
-0.6
661
Tumor
-0.6
311
Tumor
-0.6
641
Tumor
-0.6
188
Normal
-0.6
917
Tumor
-0.6
617
Tumor
-0.7
262
Normal
-0.7
343
Tumor
-0.8
283
Tumor
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
