We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ITSN1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
26.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
23.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
23.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
23.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
23.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
23.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
20.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
20.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
18.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
18.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
18.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
17.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
17.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
16.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
16.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
16.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
16.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
16.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
15.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
15.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
15.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
15.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
14.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
14.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
14.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
14.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
14.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
14.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
13.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
13.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
13.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
13.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
13.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
12.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
12.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
12.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
12.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
11.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
11.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
10.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
10.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
7.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
7.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
7.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
6.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
5.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
4.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
3.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
2.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
2.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ITSN1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.3
Number of samples
231
Samples
Sample
Description
TPM
DO23509
0 years, male, NA, stage:3, dead, 780 days
40.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
21.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
16.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
16.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
16.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
13.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
13.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
9.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
8.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
6.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
6.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
6.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
5.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
4.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
4.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
4.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
4.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
3.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
3.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
3.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
3.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
3.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
2.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
2.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
1.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
695
Tumor
0.7
533
Tumor
0.7
523
Tumor
0.7
727
Tumor
0.6
147
Tumor
0.6
513
Tumor
0.5
778
Normal
0.5
863
Tumor
0.5
737
Tumor
0.5
1014
Normal
0.5
786
Normal
0.5
958
Normal
0.4
866
Normal
0.4
536
Normal
0.4
984
Normal
0.4
922
Normal
0.4
882
Normal
0.4
498
Normal
0.4
723
Tumor
0.4
968
Normal
0.4
756
Normal
0.4
528
Normal
0.4
918
Normal
0.4
516
Normal
0.4
824
Normal
0.4
1044
Normal
0.4
964
Normal
0.4
518
Normal
0.4
912
Normal
0.4
554
Normal
0.4
277
Tumor
0.4
884
Normal
0.4
356
Normal
0.4
1022
Normal
0.4
921
Tumor
0.4
874
Normal
0.4
955
Tumor
0.3
864
Normal
0.3
327
Tumor
0.3
515
Tumor
0.3
482
Normal
0.3
412
Normal
0.3
514
Normal
0.3
478
Normal
0.3
868
Normal
0.3
286
Normal
0.3
1046
Normal
0.3
484
Normal
0.3
746
Normal
0.3
1028
Normal
0.3
745
Tumor
0.3
728
Normal
0.3
224
Normal
0.3
1032
Normal
0.3
257
Tumor
0.3
462
Normal
0.3
862
Normal
0.3
686
Normal
0.3
878
Normal
0.3
534
Normal
0.3
714
Normal
0.3
537
Tumor
0.3
926
Normal
0.3
488
Normal
0.3
954
Normal
0.3
526
Normal
0.3
696
Normal
0.3
944
Normal
0.3
818
Normal
0.3
472
Normal
0.3
976
Normal
0.3
952
Normal
0.3
448
Normal
0.3
1026
Normal
0.3
125
Tumor
0.3
524
Normal
0.3
924
Normal
0.3
172
Normal
0.3
474
Normal
0.3
228
Normal
0.3
698
Normal
0.3
738
Normal
0.3
648
Normal
0.3
444
Normal
0.3
852
Normal
0.3
1042
Normal
0.3
816
Normal
0.3
666
Normal
0.3
858
Normal
0.3
494
Normal
0.3
982
Normal
0.2
672
Normal
0.2
492
Normal
0.2
1016
Normal
0.2
716
Normal
0.2
916
Normal
0.2
416
Normal
0.2
344
Normal
0.2
546
Normal
0.2
432
Normal
0.2
466
Normal
0.2
487
Tumor
0.2
284
Normal
0.2
436
Normal
0.2
461
Tumor
0.2
558
Normal
0.2
742
Normal
0.2
568
Normal
0.2
978
Normal
0.2
722
Normal
0.2
212
Normal
0.2
538
Normal
0.2
298
Normal
0.2
721
Tumor
0.2
664
Normal
0.2
571
Tumor
0.2
148
Normal
0.2
364
Normal
0.2
572
Normal
0.2
481
Tumor
0.2
131
Tumor
0.2
192
Normal
0.2
785
Tumor
0.2
435
Tumor
0.2
564
Normal
0.2
938
Normal
0.2
218
Normal
0.2
392
Normal
0.2
616
Normal
0.2
525
Tumor
0.2
132
Normal
0.2
394
Normal
0.2
744
Normal
0.2
328
Normal
0.2
138
Normal
0.2
376
Normal
0.2
332
Normal
0.2
162
Normal
0.2
421
Tumor
0.2
464
Normal
0.2
618
Normal
0.2
981
Tumor
0.2
142
Normal
0.2
567
Tumor
0.2
136
Normal
0.2
1045
Tumor
0.2
881
Tumor
0.2
662
Normal
0.1
352
Normal
0.1
468
Normal
0.1
647
Tumor
0.1
446
Normal
0.1
911
Tumor
0.1
393
Tumor
0.1
354
Normal
0.1
517
Tumor
0.1
873
Tumor
0.1
483
Tumor
0.1
956
Normal
0.1
977
Tumor
0.1
424
Normal
0.1
574
Normal
0.1
196
Normal
0.1
914
Normal
0.1
553
Tumor
0.1
966
Normal
0.1
456
Normal
0.1
141
Tumor
0.1
358
Normal
0.1
368
Normal
0.1
636
Normal
0.1
314
Normal
0.1
452
Normal
0.1
813
Tumor
0.1
963
Tumor
0.1
414
Normal
0.1
1015
Tumor
0.1
186
Normal
0.1
422
Normal
0.1
146
Normal
0.1
124
Normal
0.1
527
Tumor
0.1
445
Tumor
0.1
628
Normal
0.1
341
Tumor
0.1
423
Tumor
0.1
434
Normal
0.1
232
Normal
0.1
396
Normal
0.1
425
Tumor
0.1
815
Tumor
0.1
386
Normal
0.1
663
Tumor
0.1
187
Tumor
0.1
342
Normal
0.1
642
Normal
0.1
867
Tumor
0.1
428
Normal
0.0
272
Normal
0.0
477
Tumor
0.0
126
Normal
0.0
271
Tumor
0.0
814
Normal
0.0
953
Tumor
0.0
114
Normal
0.0
415
Tumor
0.0
362
Normal
0.0
111
Normal
0.0
278
Normal
0.0
493
Tumor
0.0
353
Tumor
0.0
128
Normal
0.0
957
Tumor
0.0
384
Normal
0.0
465
Tumor
0.0
913
Tumor
0.0
573
Tumor
0.0
817
Tumor
0.0
431
Tumor
0.0
262
Normal
0.0
617
Tumor
0.0
463
Tumor
0.0
975
Tumor
0.0
214
Normal
0.0
312
Normal
0.0
426
Normal
0.0
188
Normal
0.0
268
Normal
0.0
433
Tumor
0.0
491
Tumor
0.0
365
Tumor
0.0
222
Normal
0.0
473
Tumor
0.0
917
Tumor
0.0
355
Tumor
0.0
258
Normal
0.0
113
Tumor
0.0
366
Normal
0.0
943
Tumor
0.0
627
Tumor
0.0
357
Tumor
0.0
915
Tumor
-0.1
923
Tumor
-0.1
261
Tumor
-0.1
388
Normal
-0.1
137
Tumor
-0.1
967
Tumor
-0.1
545
Tumor
-0.1
185
Tumor
-0.1
283
Tumor
-0.1
391
Tumor
-0.1
563
Tumor
-0.1
755
Tumor
-0.1
777
Tumor
-0.1
427
Tumor
-0.1
983
Tumor
-0.1
227
Tumor
-0.1
447
Tumor
-0.1
951
Tumor
-0.1
171
Tumor
-0.1
713
Tumor
-0.1
823
Tumor
-0.1
311
Tumor
-0.1
343
Tumor
-0.1
361
Tumor
-0.1
161
Tumor
-0.1
411
Tumor
-0.2
1013
Tumor
-0.2
641
Tumor
-0.2
191
Tumor
-0.2
467
Tumor
-0.2
715
Tumor
-0.2
145
Tumor
-0.2
615
Tumor
-0.2
635
Tumor
-0.2
697
Tumor
-0.2
285
Tumor
-0.2
1027
Tumor
-0.2
297
Tumor
-0.2
965
Tumor
-0.2
857
Tumor
-0.2
661
Tumor
-0.2
217
Tumor
-0.2
557
Tumor
-0.2
1031
Tumor
-0.2
267
Tumor
-0.2
741
Tumor
-0.2
223
Tumor
-0.2
865
Tumor
-0.2
455
Tumor
-0.2
471
Tumor
-0.2
1041
Tumor
-0.3
1025
Tumor
-0.3
451
Tumor
-0.3
195
Tumor
-0.3
313
Tumor
-0.3
213
Tumor
-0.3
363
Tumor
-0.3
861
Tumor
-0.3
112
Tumor
-0.3
937
Tumor
-0.3
497
Tumor
-0.3
231
Tumor
-0.4
1043
Tumor
-0.4
383
Tumor
-0.4
883
Tumor
-0.4
925
Tumor
-0.4
1021
Tumor
-0.4
851
Tumor
-0.4
443
Tumor
-0.4
367
Tumor
-0.5
375
Tumor
-0.5
331
Tumor
-0.5
221
Tumor
-0.5
671
Tumor
-0.6
123
Tumor
-0.6
724
Normal
-0.6
135
Tumor
-0.6
413
Tumor
-0.6
685
Tumor
-0.6
387
Tumor
-0.6
127
Tumor
-0.6
395
Tumor
-0.7
211
Tumor
-0.7
877
Tumor
-0.7
535
Tumor
-0.8
665
Tumor
-0.8
351
Tumor
-0.8
385
Tumor
-0.8
743
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
