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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ETFRF1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
93.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
81.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
75.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
66.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
58.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
57.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
57.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
56.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
56.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
55.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
54.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
53.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
50.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
49.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
49.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
48.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
48.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
47.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
47.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
46.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
45.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
45.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
44.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
42.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
42.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
42.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
42.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
41.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
40.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
40.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
40.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
39.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
38.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
38.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
38.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
38.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
38.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
38.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
38.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
37.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
37.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
37.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
37.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
37.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
37.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
36.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
36.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
36.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
36.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
36.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
35.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
35.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
34.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
34.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
34.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
34.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
34.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
33.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
33.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
33.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
33.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
33.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
33.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
33.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
32.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
32.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
32.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
32.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
32.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
32.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
32.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
32.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
31.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
31.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
30.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
30.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
30.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
30.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
30.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
30.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
30.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
29.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
29.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
29.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
29.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
29.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
29.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
29.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
29.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
29.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
29.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
29.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
29.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
29.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
28.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
28.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
28.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
28.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
28.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
28.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
28.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
28.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
27.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
27.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
27.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
27.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
26.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
26.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
26.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
26.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
26.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
26.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
26.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
26.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
25.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
25.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
25.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
25.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
25.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
25.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
25.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
25.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
25.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
25.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
24.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
24.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
24.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
24.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
24.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
24.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
24.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
24.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
24.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
24.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
24.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
24.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
24.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
23.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
23.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
23.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
23.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
23.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
23.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
23.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
23.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
23.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
23.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
23.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
23.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
23.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
22.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
22.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
22.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
22.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
22.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
22.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
22.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
22.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
22.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
22.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
22.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
22.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
22.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
22.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
22.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
22.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
22.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
22.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
22.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
22.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
21.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
21.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
21.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
21.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
21.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
21.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
21.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
21.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
21.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
21.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
21.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
21.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
21.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
20.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
20.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
20.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
20.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
20.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
20.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
20.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
20.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
20.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
20.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
20.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
20.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
20.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
20.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
19.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
19.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
19.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
19.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
19.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
19.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
19.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
19.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
19.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
19.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
19.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
19.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
19.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
19.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
19.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
19.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
19.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
19.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
19.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
19.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
19.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
18.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
18.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
18.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
18.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
18.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
18.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
18.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
18.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
18.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
18.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
18.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
18.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
18.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
18.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
17.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
17.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
17.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
17.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
17.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
17.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
17.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
17.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
17.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
17.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
17.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
16.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
16.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
16.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
16.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
16.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
16.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
16.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
16.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
15.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
15.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
15.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
15.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
15.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
15.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
15.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
15.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
15.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
14.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
14.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
14.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
14.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
13.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
13.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
13.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
13.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
13.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
13.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
12.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
12.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
12.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
12.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
12.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
12.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
11.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
11.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
11.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
11.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
11.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
10.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
10.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
10.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
10.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
10.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
9.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
9.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
535
Tumor
2.3
477
Tumor
1.6
745
Tumor
1.3
915
Tumor
1.2
627
Tumor
1.1
513
Tumor
1.1
515
Tumor
1.0
867
Tumor
1.0
361
Tumor
1.0
332
Normal
0.9
1045
Tumor
0.8
984
Normal
0.8
615
Tumor
0.8
452
Normal
0.8
1032
Normal
0.8
553
Tumor
0.8
785
Tumor
0.8
864
Normal
0.8
958
Normal
0.8
278
Normal
0.7
484
Normal
0.7
922
Normal
0.7
546
Normal
0.7
448
Normal
0.7
534
Normal
0.7
465
Tumor
0.7
918
Normal
0.7
756
Normal
0.7
568
Normal
0.7
862
Normal
0.7
558
Normal
0.7
924
Normal
0.7
1027
Tumor
0.7
698
Normal
0.7
124
Normal
0.7
472
Normal
0.6
866
Normal
0.6
431
Tumor
0.6
526
Normal
0.6
746
Normal
0.6
314
Normal
0.6
636
Normal
0.6
944
Normal
0.6
742
Normal
0.6
824
Normal
0.6
488
Normal
0.6
298
Normal
0.6
786
Normal
0.6
738
Normal
0.6
938
Normal
0.6
411
Tumor
0.6
966
Normal
0.6
572
Normal
0.6
1046
Normal
0.6
925
Tumor
0.6
376
Normal
0.6
414
Normal
0.6
1022
Normal
0.6
664
Normal
0.6
858
Normal
0.6
186
Normal
0.5
128
Normal
0.5
882
Normal
0.5
462
Normal
0.5
222
Normal
0.5
328
Normal
0.5
968
Normal
0.5
722
Normal
0.5
232
Normal
0.5
1016
Normal
0.5
1026
Normal
0.5
884
Normal
0.5
648
Normal
0.5
365
Tumor
0.5
716
Normal
0.5
926
Normal
0.5
964
Normal
0.5
1044
Normal
0.5
686
Normal
0.5
422
Normal
0.5
571
Tumor
0.5
723
Tumor
0.5
873
Tumor
0.5
196
Normal
0.5
818
Normal
0.5
356
Normal
0.5
982
Normal
0.5
412
Normal
0.5
563
Tumor
0.5
518
Normal
0.5
857
Tumor
0.4
868
Normal
0.4
952
Normal
0.4
436
Normal
0.4
286
Normal
0.4
852
Normal
0.4
354
Normal
0.4
342
Normal
0.4
148
Normal
0.4
714
Normal
0.4
618
Normal
0.4
494
Normal
0.4
426
Normal
0.4
514
Normal
0.4
364
Normal
0.4
524
Normal
0.4
466
Normal
0.4
142
Normal
0.4
468
Normal
0.4
954
Normal
0.4
214
Normal
0.4
912
Normal
0.4
528
Normal
0.4
937
Tumor
0.4
628
Normal
0.4
554
Normal
0.4
778
Normal
0.4
392
Normal
0.4
574
Normal
0.3
428
Normal
0.3
642
Normal
0.3
878
Normal
0.3
956
Normal
0.3
446
Normal
0.3
916
Normal
0.3
172
Normal
0.3
616
Normal
0.3
137
Tumor
0.3
284
Normal
0.3
352
Normal
0.3
228
Normal
0.3
127
Tumor
0.3
258
Normal
0.3
388
Normal
0.3
368
Normal
0.3
976
Normal
0.3
741
Tumor
0.3
111
Normal
0.3
358
Normal
0.3
1042
Normal
0.3
171
Tumor
0.3
728
Normal
0.3
394
Normal
0.3
744
Normal
0.2
218
Normal
0.2
1014
Normal
0.2
162
Normal
0.2
672
Normal
0.2
474
Normal
0.2
662
Normal
0.2
362
Normal
0.2
978
Normal
0.2
443
Tumor
0.2
564
Normal
0.2
132
Normal
0.2
538
Normal
0.2
423
Tumor
0.2
224
Normal
0.2
312
Normal
0.2
231
Tumor
0.2
416
Normal
0.2
1028
Normal
0.2
816
Normal
0.2
114
Normal
0.2
384
Normal
0.2
695
Tumor
0.2
136
Normal
0.2
861
Tumor
0.2
262
Normal
0.2
1025
Tumor
0.1
666
Normal
0.1
696
Normal
0.1
874
Normal
0.1
366
Normal
0.1
523
Tumor
0.1
341
Tumor
0.1
1041
Tumor
0.1
1043
Tumor
0.1
126
Normal
0.1
478
Normal
0.1
123
Tumor
0.1
487
Tumor
0.1
527
Tumor
0.1
914
Normal
0.1
415
Tumor
0.1
327
Tumor
0.1
955
Tumor
0.1
344
Normal
0.1
647
Tumor
0.1
456
Normal
0.1
424
Normal
0.1
1015
Tumor
0.1
272
Normal
0.1
1031
Tumor
0.0
981
Tumor
0.0
383
Tumor
0.0
727
Tumor
0.0
138
Normal
0.0
363
Tumor
0.0
261
Tumor
0.0
451
Tumor
0.0
141
Tumor
0.0
432
Normal
0.0
516
Normal
0.0
721
Tumor
0.0
212
Normal
0.0
464
Normal
0.0
227
Tumor
0.0
851
Tumor
0.0
393
Tumor
0.0
386
Normal
0.0
455
Tumor
0.0
445
Tumor
0.0
777
Tumor
0.0
911
Tumor
0.0
396
Normal
0.0
482
Normal
0.0
421
Tumor
0.0
863
Tumor
-0.1
567
Tumor
-0.1
471
Tumor
-0.1
755
Tumor
-0.1
353
Tumor
-0.1
481
Tumor
-0.1
921
Tumor
-0.1
112
Tumor
-0.1
195
Tumor
-0.2
715
Tumor
-0.2
737
Tumor
-0.2
498
Normal
-0.2
536
Normal
-0.2
433
Tumor
-0.2
188
Normal
-0.2
492
Normal
-0.2
113
Tumor
-0.2
387
Tumor
-0.2
665
Tumor
-0.2
663
Tumor
-0.2
713
Tumor
-0.3
963
Tumor
-0.3
147
Tumor
-0.3
461
Tumor
-0.3
967
Tumor
-0.3
923
Tumor
-0.3
517
Tumor
-0.3
434
Normal
-0.3
635
Tumor
-0.3
557
Tumor
-0.3
268
Normal
-0.3
221
Tumor
-0.3
187
Tumor
-0.3
277
Tumor
-0.3
617
Tumor
-0.3
537
Tumor
-0.3
146
Normal
-0.3
685
Tumor
-0.3
191
Tumor
-0.4
823
Tumor
-0.4
357
Tumor
-0.4
865
Tumor
-0.4
145
Tumor
-0.4
641
Tumor
-0.4
883
Tumor
-0.4
815
Tumor
-0.4
267
Tumor
-0.5
444
Normal
-0.5
913
Tumor
-0.5
297
Tumor
-0.5
447
Tumor
-0.5
483
Tumor
-0.5
135
Tumor
-0.6
185
Tumor
-0.6
217
Tumor
-0.6
473
Tumor
-0.6
697
Tumor
-0.6
1013
Tumor
-0.6
813
Tumor
-0.6
257
Tumor
-0.6
223
Tumor
-0.6
435
Tumor
-0.6
355
Tumor
-0.6
391
Tumor
-0.7
573
Tumor
-0.7
1021
Tumor
-0.7
983
Tumor
-0.7
161
Tumor
-0.7
671
Tumor
-0.7
313
Tumor
-0.7
957
Tumor
-0.7
331
Tumor
-0.7
192
Normal
-0.8
271
Tumor
-0.8
493
Tumor
-0.8
285
Tumor
-0.8
525
Tumor
-0.8
367
Tumor
-0.8
877
Tumor
-0.9
953
Tumor
-0.9
977
Tumor
-0.9
951
Tumor
-0.9
463
Tumor
-0.9
491
Tumor
-0.9
814
Normal
-0.9
965
Tumor
-0.9
975
Tumor
-1.0
413
Tumor
-1.0
881
Tumor
-1.0
213
Tumor
-1.0
943
Tumor
-1.1
425
Tumor
-1.1
545
Tumor
-1.2
131
Tumor
-1.2
375
Tumor
-1.2
351
Tumor
-1.3
724
Normal
-1.3
395
Tumor
-1.4
661
Tumor
-1.4
467
Tumor
-1.4
533
Tumor
-1.4
743
Tumor
-1.4
427
Tumor
-1.5
917
Tumor
-1.5
343
Tumor
-1.5
497
Tumor
-1.5
817
Tumor
-1.5
125
Tumor
-1.7
283
Tumor
-1.8
311
Tumor
-1.8
385
Tumor
-1.8
211
Tumor
-1.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
