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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HMGN1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
81.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
344.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
207.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
207.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
205.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
204.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
203.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
202.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
199.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
186.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
185.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
184.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
181.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
180.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
177.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
174.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
173.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
172.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
170.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
167.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
167.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
166.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
164.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
164.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
163.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
162.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
160.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
158.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
156.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
152.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
151.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
149.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
148.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
147.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
146.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
143.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
143.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
142.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
142.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
142.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
139.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
139.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
138.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
135.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
135.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
135.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
135.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
135.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
134.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
134.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
134.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
134.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
134.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
132.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
130.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
130.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
130.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
126.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
125.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
124.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
123.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
123.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
122.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
121.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
121.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
120.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
120.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
120.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
119.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
119.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
117.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
117.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
116.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
115.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
115.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
115.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
114.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
112.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
112.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
112.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
111.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
110.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
110.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
109.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
107.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
107.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
107.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
107.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
106.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
106.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
105.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
105.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
105.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
104.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
104.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
103.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
103.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
103.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
102.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
101.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
101.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
101.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
99.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
99.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
98.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
98.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
97.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
97.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
97.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
96.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
96.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
96.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
96.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
96.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
96.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
95.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
94.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
94.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
93.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
93.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
92.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
92.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
92.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
91.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
91.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
90.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
90.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
90.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
90.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
89.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
89.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
88.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
87.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
86.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
86.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
86.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
85.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
85.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
85.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
84.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
84.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
84.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
82.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
82.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
82.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
81.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
81.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
81.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
81.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
80.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
80.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
80.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
80.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
80.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
79.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
79.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
79.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
79.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
79.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
77.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
76.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
76.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
76.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
75.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
75.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
74.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
73.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
72.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
72.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
72.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
72.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
71.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
71.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
71.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
71.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
71.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
70.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
70.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
70.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
69.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
69.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
69.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
69.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
69.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
69.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
68.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
68.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
68.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
67.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
67.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
66.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
66.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
66.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
65.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
65.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
64.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
64.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
64.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
64.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
64.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
63.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
63.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
63.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
63.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
62.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
62.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
62.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
62.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
62.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
62.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
61.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
61.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
61.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
60.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
60.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
60.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
60.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
60.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
60.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
59.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
59.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
59.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
59.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
59.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
59.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
58.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
58.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
58.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
58.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
57.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
57.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
56.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
56.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
56.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
56.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
56.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
55.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
55.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
55.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
54.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
54.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
54.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
54.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
54.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
53.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
53.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
53.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
52.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
52.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
52.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
51.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
50.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
50.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
50.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
50.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
50.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
50.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
50.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
50.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
50.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
49.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
49.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
48.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
48.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
48.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
48.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
48.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
48.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
48.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
48.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
48.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
48.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
47.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
47.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
47.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
47.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
47.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
47.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
47.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
47.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
46.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
46.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
45.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
45.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
45.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
45.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
45.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
45.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
45.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
45.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
45.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
44.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
44.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
44.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
44.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
43.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
43.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
43.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
43.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
42.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
42.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
41.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
41.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
41.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
41.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
41.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
41.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
40.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
40.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
40.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
39.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
39.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
39.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
38.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
38.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
38.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
38.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
38.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
38.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
38.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
38.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
37.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
37.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
36.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
36.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
36.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
36.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
35.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
35.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
35.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
35.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
34.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
33.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
33.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
33.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
32.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
32.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
32.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
30.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
30.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
30.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
30.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
29.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
29.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
28.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
27.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
27.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
26.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
26.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
25.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
25.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
25.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
24.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
22.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
22.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
21.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
19.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
19.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
17.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
15.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
13.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HMGN1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
101.7
Number of samples
231
Samples
Sample
Description
TPM
DO45259
0 years, male, NA, stage:3, alive, 330 days
327.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
265.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
264.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
248.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
246.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
237.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
236.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
235.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
233.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
229.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
228.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
224.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
218.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
216.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
203.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
203.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
198.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
198.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
189.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
187.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
181.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
179.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
177.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
174.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
173.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
168.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
168.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
165.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
165.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
163.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
160.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
159.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
158.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
157.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
157.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
156.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
155.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
155.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
155.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
150.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
149.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
146.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
143.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
141.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
141.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
139.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
139.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
139.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
137.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
136.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
133.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
132.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
130.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
129.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
129.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
128.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
127.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
127.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
126.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
125.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
124.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
122.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
121.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
118.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
117.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
116.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
115.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
114.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
113.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
113.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
113.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
112.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
111.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
110.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
110.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
110.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
108.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
107.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
106.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
105.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
105.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
105.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
105.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
105.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
104.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
103.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
102.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
101.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
101.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
101.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
100.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
100.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
100.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
99.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
99.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
98.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
98.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
98.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
98.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
98.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
97.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
97.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
97.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
97.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
97.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
97.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
96.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
95.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
95.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
94.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
94.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
94.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
93.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
93.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
93.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
93.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
92.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
92.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
92.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
92.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
92.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
92.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
91.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
90.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
90.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
90.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
89.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
89.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
88.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
88.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
87.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
86.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
86.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
85.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
85.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
85.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
83.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
82.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
81.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
81.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
81.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
81.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
81.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
80.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
79.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
79.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
79.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
78.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
77.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
75.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
74.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
74.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
74.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
73.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
73.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
73.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
73.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
72.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
72.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
71.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
70.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
69.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
69.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
69.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
67.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
67.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
66.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
66.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
66.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
66.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
66.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
65.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
65.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
63.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
63.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
62.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
61.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
59.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
58.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
57.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
57.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
56.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
56.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
55.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
55.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
55.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
54.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
54.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
54.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
54.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
54.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
53.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
53.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
52.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
50.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
50.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
48.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
48.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
48.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
46.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
46.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
46.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
46.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
45.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
45.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
43.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
42.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
42.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
41.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
40.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
40.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
39.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
38.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
36.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
36.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
35.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
34.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
34.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
34.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
34.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
32.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
30.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
30.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
30.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
28.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
28.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
26.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
23.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
21.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
18.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
341
Tumor
1.7
951
Tumor
1.6
695
Tumor
1.6
743
Tumor
1.5
921
Tumor
1.5
965
Tumor
1.5
131
Tumor
1.5
487
Tumor
1.4
957
Tumor
1.3
817
Tumor
1.3
161
Tumor
1.3
517
Tumor
1.3
865
Tumor
1.3
425
Tumor
1.3
737
Tumor
1.2
343
Tumor
1.2
1025
Tumor
1.2
471
Tumor
1.1
635
Tumor
1.1
975
Tumor
1.1
1031
Tumor
1.1
977
Tumor
1.1
647
Tumor
1.1
477
Tumor
1.0
1021
Tumor
1.0
411
Tumor
1.0
641
Tumor
1.0
527
Tumor
0.9
553
Tumor
0.9
355
Tumor
0.9
461
Tumor
0.9
357
Tumor
0.9
285
Tumor
0.9
1043
Tumor
0.9
563
Tumor
0.9
953
Tumor
0.8
573
Tumor
0.8
445
Tumor
0.8
413
Tumor
0.8
983
Tumor
0.8
663
Tumor
0.8
963
Tumor
0.8
967
Tumor
0.7
211
Tumor
0.7
271
Tumor
0.7
523
Tumor
0.7
617
Tumor
0.7
881
Tumor
0.7
863
Tumor
0.7
755
Tumor
0.7
493
Tumor
0.7
277
Tumor
0.7
923
Tumor
0.6
525
Tumor
0.6
727
Tumor
0.6
883
Tumor
0.6
814
Normal
0.6
815
Tumor
0.6
515
Tumor
0.6
545
Tumor
0.6
537
Tumor
0.6
257
Tumor
0.6
221
Tumor
0.6
395
Tumor
0.6
671
Tumor
0.6
433
Tumor
0.6
455
Tumor
0.6
943
Tumor
0.6
393
Tumor
0.6
823
Tumor
0.6
443
Tumor
0.5
615
Tumor
0.5
483
Tumor
0.5
351
Tumor
0.5
813
Tumor
0.5
955
Tumor
0.5
917
Tumor
0.5
112
Tumor
0.5
481
Tumor
0.4
661
Tumor
0.4
478
Normal
0.4
387
Tumor
0.4
524
Normal
0.4
721
Tumor
0.3
435
Tumor
0.3
538
Normal
0.3
147
Tumor
0.3
141
Tumor
0.3
984
Normal
0.3
447
Tumor
0.3
571
Tumor
0.3
916
Normal
0.3
297
Tumor
0.3
628
Normal
0.3
283
Tumor
0.3
331
Tumor
0.3
463
Tumor
0.2
431
Tumor
0.2
966
Normal
0.2
192
Normal
0.2
536
Normal
0.2
685
Tumor
0.2
535
Tumor
0.2
223
Tumor
0.2
363
Tumor
0.2
924
Normal
0.2
284
Normal
0.2
516
Normal
0.2
777
Tumor
0.1
852
Normal
0.1
958
Normal
0.1
434
Normal
0.1
498
Normal
0.1
785
Tumor
0.1
492
Normal
0.1
877
Tumor
0.1
878
Normal
0.1
1013
Tumor
0.1
1045
Tumor
0.1
385
Tumor
0.1
386
Normal
0.1
364
Normal
0.1
135
Tumor
0.1
745
Tumor
0.1
125
Tumor
0.1
1041
Tumor
0.1
1044
Normal
0.1
1028
Normal
0.1
311
Tumor
0.1
857
Tumor
0.1
415
Tumor
0.1
213
Tumor
0.1
456
Normal
0.1
713
Tumor
0.0
513
Tumor
0.0
171
Tumor
0.0
227
Tumor
0.0
925
Tumor
0.0
195
Tumor
0.0
922
Normal
0.0
1027
Tumor
0.0
954
Normal
0.0
416
Normal
0.0
778
Normal
0.0
187
Tumor
0.0
328
Normal
0.0
188
Normal
0.0
185
Tumor
0.0
1042
Normal
0.0
494
Normal
0.0
554
Normal
0.0
874
Normal
0.0
327
Tumor
0.0
861
Tumor
0.0
746
Normal
0.0
362
Normal
0.0
714
Normal
0.0
918
Normal
0.0
715
Tumor
0.0
724
Normal
0.0
212
Normal
0.0
1026
Normal
0.0
465
Tumor
0.0
968
Normal
0.0
716
Normal
0.0
574
Normal
-0.1
564
Normal
-0.1
627
Tumor
-0.1
391
Tumor
-0.1
444
Normal
-0.1
384
Normal
-0.1
267
Tumor
-0.1
421
Tumor
-0.1
268
Normal
-0.1
224
Normal
-0.1
558
Normal
-0.1
567
Tumor
-0.1
572
Normal
-0.1
313
Tumor
-0.1
412
Normal
-0.1
123
Tumor
-0.1
1022
Normal
-0.1
423
Tumor
-0.1
662
Normal
-0.1
952
Normal
-0.1
978
Normal
-0.1
528
Normal
-0.1
474
Normal
-0.1
696
Normal
-0.1
756
Normal
-0.1
353
Tumor
-0.1
557
Tumor
-0.1
518
Normal
-0.1
728
Normal
-0.1
1032
Normal
-0.1
472
Normal
-0.1
664
Normal
-0.1
912
Normal
-0.1
866
Normal
-0.2
312
Normal
-0.2
427
Tumor
-0.2
938
Normal
-0.2
864
Normal
-0.2
816
Normal
-0.2
744
Normal
-0.2
473
Tumor
-0.2
533
Tumor
-0.2
858
Normal
-0.2
228
Normal
-0.2
262
Normal
-0.2
546
Normal
-0.2
926
Normal
-0.2
1014
Normal
-0.2
231
Tumor
-0.2
884
Normal
-0.2
462
Normal
-0.2
722
Normal
-0.2
366
Normal
-0.2
686
Normal
-0.2
514
Normal
-0.2
396
Normal
-0.2
113
Tumor
-0.2
824
Normal
-0.2
126
Normal
-0.2
956
Normal
-0.2
298
Normal
-0.2
738
Normal
-0.2
913
Tumor
-0.3
568
Normal
-0.3
672
Normal
-0.3
272
Normal
-0.3
452
Normal
-0.3
976
Normal
-0.3
468
Normal
-0.3
698
Normal
-0.3
818
Normal
-0.3
982
Normal
-0.3
911
Tumor
-0.3
467
Tumor
-0.3
882
Normal
-0.3
1016
Normal
-0.3
491
Tumor
-0.3
217
Tumor
-0.3
124
Normal
-0.3
497
Tumor
-0.3
868
Normal
-0.3
448
Normal
-0.3
697
Tumor
-0.3
616
Normal
-0.3
127
Tumor
-0.3
365
Tumor
-0.3
137
Tumor
-0.3
466
Normal
-0.3
261
Tumor
-0.3
354
Normal
-0.3
286
Normal
-0.3
352
Normal
-0.3
258
Normal
-0.3
534
Normal
-0.4
786
Normal
-0.4
944
Normal
-0.4
1046
Normal
-0.4
642
Normal
-0.4
484
Normal
-0.4
873
Tumor
-0.4
488
Normal
-0.4
482
Normal
-0.4
636
Normal
-0.4
361
Tumor
-0.4
446
Normal
-0.4
618
Normal
-0.4
862
Normal
-0.4
191
Tumor
-0.4
723
Tumor
-0.4
142
Normal
-0.4
451
Tumor
-0.4
146
Normal
-0.4
232
Normal
-0.4
851
Tumor
-0.4
214
Normal
-0.4
964
Normal
-0.4
392
Normal
-0.4
915
Tumor
-0.5
368
Normal
-0.5
464
Normal
-0.5
937
Tumor
-0.5
356
Normal
-0.5
648
Normal
-0.5
111
Normal
-0.5
1015
Tumor
-0.5
436
Normal
-0.5
742
Normal
-0.5
278
Normal
-0.5
367
Tumor
-0.5
376
Normal
-0.5
358
Normal
-0.5
394
Normal
-0.5
383
Tumor
-0.5
914
Normal
-0.5
344
Normal
-0.5
342
Normal
-0.5
388
Normal
-0.5
424
Normal
-0.6
666
Normal
-0.6
426
Normal
-0.6
138
Normal
-0.6
136
Normal
-0.6
867
Tumor
-0.6
422
Normal
-0.6
981
Tumor
-0.6
665
Tumor
-0.6
428
Normal
-0.7
148
Normal
-0.7
375
Tumor
-0.7
114
Normal
-0.7
145
Tumor
-0.7
222
Normal
-0.7
432
Normal
-0.7
132
Normal
-0.7
332
Normal
-0.7
414
Normal
-0.7
162
Normal
-0.8
186
Normal
-0.8
196
Normal
-0.8
218
Normal
-0.8
172
Normal
-0.8
526
Normal
-0.8
741
Tumor
-0.9
128
Normal
-0.9
314
Normal
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
