MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.8 nTPM
HPA Brain:44.4 nTPM
GTEx:12.8 nTPM
FANTOM5:20.5 Scaled Tags Per Million
Pig:6.4 nTPM
Mouse:17.8 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 44.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.9
2219 Male, age 76, both hemispheres 65.5
2586 Male, age 75, left hemisphere 65.0
2019 Male, age 18, unknown 58.0
2828 Female, age 72, unknown 39.7
1827 Male, age 72, unknown 38.4
2411 Female, age 72, unknown 38.1
1833 Male, age 53, unknown 37.6
1830 Male, age 51, unknown 35.9
1870 Female, age 42, unknown 31.4
2666 Male, age 74, left hemisphere 29.6
Dorsal raphe nucleus
nTPM: 36.3
1828 Male, age 53, unknown 40.4
2298 Female, age 72, unknown 37.7
2016 Female, age 72, unknown 35.0
2750 Male, age 76, both hemispheres 34.7
2047 Male, age 72, unknown 33.5
Inferior colliculus
nTPM: 44.4
1890 Male, age 53, unknown 47.7
2097 Female, age 72, unknown 44.6
1848 Female, age 42, unknown 44.0
2849 Male, age 72, unknown 41.3
Median raphe nucleus
nTPM: 29.9
2220 Male, age 76, midline 29.9
Periaquaductal grey, anterior
nTPM: 31.6
2502 Female, age 75, unknown 42.2
1795 Male, age 51, unknown 34.9
1947 Male, age 18, unknown 17.7
Periaquaductal grey, dorsal
nTPM: 33.5
2464 Female, age 72, unknown 40.3
1840 Male, age 53, unknown 35.9
1831 Male, age 72, unknown 35.6
2850 Male, age 76, both hemispheres 22.4
Periaquaductal grey, lateral
nTPM: 30.3
2053 Male, age 18, unknown 35.3
2140 Male, age 76, both hemispheres 28.6
2272 Male, age 74, both hemispheres 27.1
Pretectal area
nTPM: 39.8
2007 Male, age 72, unknown 52.8
1816 Male, age 51, unknown 52.7
1944 Female, age 72, unknown 46.6
1817 Female, age 42, unknown 45.0
1815 Male, age 53, unknown 40.2
2407 Male, age 75, both hemispheres 37.4
2316 Male, age 76, right hemisphere 36.6
2224 Female, age 72, unknown 33.9
2825 Male, age 18, unknown 32.7
2667 Female, age 75, unknown 31.8
2273 Male, age 74, both hemispheres 28.3
Red nucleus
nTPM: 39.0
2785 Male, age 18, unknown 51.3
2584 Male, age 75, left hemisphere 45.2
2823 Male, age 76, right hemisphere 43.4
2588 Male, age 74, left hemisphere 43.2
2227 Male, age 72, unknown 40.4
2769 Male, age 72, unknown 40.4
2503 Female, age 72, unknown 38.9
1904 Male, age 53, unknown 36.5
1865 Male, age 51, unknown 33.5
1821 Female, age 72, unknown 32.7
2725 Female, age 75, unknown 31.4
1954 Female, age 42, unknown 31.1
Substantia nigra
nTPM: 32.2
1889 Female, age 72, unknown 41.0
2583 Male, age 75, right hemisphere 38.5
2590 Female, age 75, unknown 35.7
2665 Male, age 74, both hemispheres 35.5
1941 Male, age 53, unknown 32.1
1916 Female, age 42, unknown 31.0
2699 Male, age 18, unknown 29.1
2409 Female, age 72, unknown 27.0
1851 Male, age 51, unknown 26.5
2241 Male, age 72, unknown 25.8
Superior colliculus
nTPM: 39.6
2087 Female, age 72, unknown 49.8
2664 Male, age 75, both hemispheres 48.9
1839 Male, age 51, unknown 39.8
2261 Male, age 18, unknown 39.7
1995 Male, age 72, unknown 38.4
2668 Female, age 75, unknown 37.3
1913 Female, age 42, unknown 36.9
1796 Male, age 53, unknown 36.4
1895 Male, age 76, right hemisphere 36.2
2587 Male, age 74, left hemisphere 32.7
Ventral tegmental area
nTPM: 35.9
2223 Female, age 72, unknown 39.9
2218 Male, age 76, both hemispheres 38.5
2410 Female, age 72, unknown 37.0
1942 Male, age 51, unknown 36.2
2021 Male, age 53, unknown 33.6
1915 Female, age 42, unknown 30.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 12.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.8
Samples: 139

Max nTPM: 25.3
Min nTPM: 6.3
Std nTPM: 3.3
Median nTPM: 12.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 25.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 25.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 23.3
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 23.0
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 21.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 21.4
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 18.0
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 18.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 18.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 17.9
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 17.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 20.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.5
FF:10158-103A5 76 years, female 20.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 6.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 4.3
Samples: 4

Max nTPM: 5.4
Min nTPM: 3.1
Sample A Female 5.4
Sample B Female 4.2
Sample C Male 4.5
Sample D Male 3.1
Midbrain
nTPM: 5.2
Samples: 4

Max nTPM: 7.2
Min nTPM: 2.9
Sample A Female 2.9
Sample B Female 4.7
Sample C Male 6.1
Sample D Male 7.2
Periaqueductal gray
nTPM: 4.9
Samples: 3

Max nTPM: 5.4
Min nTPM: 4.1
Sample B Female 5.3
Sample C Male 5.4
Sample D Male 4.1
Superior colliculi
nTPM: 6.4
Samples: 4

Max nTPM: 7.3
Min nTPM: 5.0
Sample A Female 7.0
Sample B Female 6.3
Sample C Male 5.0
Sample D Male 7.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 17.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.8
Samples: 4

Max nTPM: 20.4
Min nTPM: 16.5
Sample A Male 20.4
Sample B Male 16.7
Sample C Female 16.5
Sample D Female 17.6

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