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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MT1A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
71.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
3992.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1855.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1768.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1653.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1456.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
790.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
742.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
550.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
411.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
403.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
361.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
307.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
276.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
242.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
239.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
238.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
199.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
198.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
183.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
175.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
172.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
170.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
169.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
159.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
159.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
148.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
145.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
141.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
141.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
140.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
138.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
137.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
119.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
119.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
119.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
118.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
114.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
112.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
109.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
104.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
102.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
101.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
99.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
96.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
93.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
93.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
90.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
90.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
89.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
86.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
86.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
83.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
78.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
77.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
76.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
75.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
75.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
74.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
73.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
71.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
68.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
67.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
64.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
64.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
63.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
63.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
62.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
62.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
61.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
59.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
58.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
57.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
55.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
55.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
55.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
55.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
55.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
54.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
53.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
53.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
52.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
51.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
51.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
51.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
50.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
49.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
48.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
48.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
48.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
45.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
45.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
45.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
44.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
44.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
43.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
43.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
43.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
43.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
42.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
42.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
41.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
41.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
40.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
39.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
39.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
39.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
38.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
38.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
38.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
38.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
37.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
37.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
36.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
36.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
34.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
34.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
33.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
33.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
33.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
32.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
32.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
31.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
31.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
31.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
30.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
30.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
30.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
30.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
29.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
29.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
29.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
29.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
29.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
29.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
28.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
28.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
27.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
27.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
27.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
27.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
26.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
26.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
26.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
25.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
25.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
25.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
24.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
24.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
24.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
24.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
24.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
24.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
23.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
23.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
23.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
23.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
22.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
22.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
21.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
21.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
20.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
20.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
20.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
20.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
20.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
19.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
19.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
19.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
19.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
19.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
19.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
18.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
18.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
18.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
18.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
17.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
17.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
17.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
17.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
17.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
16.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
16.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
16.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
15.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
15.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
15.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
15.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
15.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
14.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
14.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
14.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
13.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
13.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
13.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
12.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
12.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
12.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
10.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
8.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
7.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
7.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
4.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
4.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
4.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
4.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
3.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
3.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
3.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
3.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
2.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
2.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
2.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
2.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
2.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
2.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
2.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
2.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
2.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
2.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
1.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
1.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
1.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
1.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
1.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MT1A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
53.5
Number of samples
231
Samples
Sample
Description
TPM
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5933.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
1735.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
811.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
212.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
149.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
148.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
145.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
128.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
97.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
78.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
76.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
76.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
76.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
74.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
69.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
65.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
63.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
56.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
55.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
54.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
48.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
47.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
44.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
43.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
43.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
42.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
41.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
36.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
35.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
34.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
33.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
33.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
32.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
32.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
30.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
30.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
29.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
28.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
25.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
25.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
25.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
24.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
23.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
22.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
22.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
22.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
22.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
22.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
21.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
21.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
21.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
21.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
20.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
20.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
20.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
20.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
20.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
20.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
19.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
19.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
19.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
18.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
18.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
18.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
18.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
18.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
17.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
17.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
17.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
16.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
16.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
15.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
15.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
15.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
15.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
14.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
13.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
13.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
12.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
12.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
11.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
11.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
7.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
6.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
5.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
4.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
4.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
4.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
3.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
3.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
3.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
3.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
3.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
3.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
3.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
3.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
3.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
2.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
2.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
2.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
2.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
2.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
2.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
2.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
2.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
2.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
2.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
2.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
2.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
1.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
1.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
1.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
1.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
1.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
1.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
1.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
1.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
1.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
1.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
1.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
1.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
1.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
1.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
617
Tumor
4.5
415
Tumor
4.4
451
Tumor
3.2
554
Normal
2.7
113
Tumor
2.7
488
Normal
2.3
484
Normal
2.3
937
Tumor
2.0
534
Normal
1.8
528
Normal
1.8
714
Normal
1.7
858
Normal
1.6
866
Normal
1.5
918
Normal
1.5
513
Tumor
1.4
982
Normal
1.2
698
Normal
1.2
878
Normal
1.2
968
Normal
1.1
778
Normal
1.0
518
Normal
1.0
564
Normal
1.0
298
Normal
0.9
482
Normal
0.9
955
Tumor
0.9
738
Normal
0.9
744
Normal
0.9
196
Normal
0.9
376
Normal
0.9
227
Tumor
0.8
498
Normal
0.8
462
Normal
0.8
882
Normal
0.8
818
Normal
0.8
568
Normal
0.8
746
Normal
0.8
286
Normal
0.8
353
Tumor
0.7
926
Normal
0.7
538
Normal
0.7
472
Normal
0.6
686
Normal
0.6
976
Normal
0.6
745
Tumor
0.6
148
Normal
0.6
723
Tumor
0.6
218
Normal
0.6
922
Normal
0.5
964
Normal
0.5
494
Normal
0.5
786
Normal
0.5
526
Normal
0.5
966
Normal
0.4
664
Normal
0.4
1014
Normal
0.4
636
Normal
0.4
278
Normal
0.4
514
Normal
0.4
352
Normal
0.4
944
Normal
0.4
362
Normal
0.4
524
Normal
0.4
984
Normal
0.4
696
Normal
0.4
492
Normal
0.4
952
Normal
0.3
737
Tumor
0.3
162
Normal
0.3
474
Normal
0.3
572
Normal
0.3
824
Normal
0.3
574
Normal
0.3
356
Normal
0.3
546
Normal
0.3
426
Normal
0.3
232
Normal
0.2
516
Normal
0.2
874
Normal
0.2
958
Normal
0.2
618
Normal
0.2
1016
Normal
0.2
816
Normal
0.2
228
Normal
0.2
446
Normal
0.2
864
Normal
0.2
536
Normal
0.2
642
Normal
0.1
722
Normal
0.1
884
Normal
0.1
412
Normal
0.1
428
Normal
0.1
938
Normal
0.0
411
Tumor
0.0
1028
Normal
0.0
716
Normal
0.0
851
Tumor
0.0
214
Normal
0.0
416
Normal
0.0
448
Normal
0.0
914
Normal
0.0
396
Normal
-0.1
1022
Normal
-0.1
1032
Normal
-0.1
327
Tumor
-0.1
558
Normal
-0.1
191
Tumor
-0.1
422
Normal
-0.1
1026
Normal
-0.2
628
Normal
-0.2
328
Normal
-0.2
1046
Normal
-0.2
394
Normal
-0.2
258
Normal
-0.2
222
Normal
-0.2
212
Normal
-0.2
956
Normal
-0.2
456
Normal
-0.3
436
Normal
-0.3
364
Normal
-0.3
224
Normal
-0.3
186
Normal
-0.3
468
Normal
-0.3
862
Normal
-0.3
861
Tumor
-0.4
666
Normal
-0.4
916
Normal
-0.4
142
Normal
-0.4
917
Tumor
-0.4
111
Normal
-0.4
478
Normal
-0.4
332
Normal
-0.4
616
Normal
-0.4
464
Normal
-0.5
742
Normal
-0.5
172
Normal
-0.5
114
Normal
-0.5
756
Normal
-0.5
284
Normal
-0.5
414
Normal
-0.5
466
Normal
-0.5
217
Tumor
-0.5
431
Tumor
-0.6
272
Normal
-0.6
491
Tumor
-0.6
368
Normal
-0.6
648
Normal
-0.6
452
Normal
-0.6
262
Normal
-0.6
314
Normal
-0.6
344
Normal
-0.6
432
Normal
-0.6
384
Normal
-0.6
728
Normal
-0.6
365
Tumor
-0.6
383
Tumor
-0.6
467
Tumor
-0.7
126
Normal
-0.7
342
Normal
-0.7
627
Tumor
-0.7
136
Normal
-0.7
268
Normal
-0.7
138
Normal
-0.7
1015
Tumor
-0.8
755
Tumor
-0.8
188
Normal
-0.8
911
Tumor
-0.8
954
Normal
-0.8
128
Normal
-0.8
195
Tumor
-0.8
363
Tumor
-0.8
563
Tumor
-0.8
814
Normal
-0.9
444
Normal
-0.9
146
Normal
-0.9
615
Tumor
-0.9
981
Tumor
-0.9
424
Normal
-0.9
312
Normal
-0.9
434
Normal
-0.9
967
Tumor
-1.0
455
Tumor
-1.0
857
Tumor
-1.0
924
Normal
-1.0
672
Normal
-1.0
977
Tumor
-1.0
868
Normal
-1.0
957
Tumor
-1.1
355
Tumor
-1.1
865
Tumor
-1.1
366
Normal
-1.1
635
Tumor
-1.1
124
Normal
-1.1
1044
Normal
-1.1
145
Tumor
-1.1
192
Normal
-1.2
132
Normal
-1.2
427
Tumor
-1.2
463
Tumor
-1.2
112
Tumor
-1.2
662
Normal
-1.2
358
Normal
-1.2
465
Tumor
-1.3
813
Tumor
-1.3
223
Tumor
-1.3
392
Normal
-1.3
877
Tumor
-1.3
421
Tumor
-1.4
881
Tumor
-1.4
1043
Tumor
-1.4
127
Tumor
-1.4
386
Normal
-1.4
497
Tumor
-1.4
161
Tumor
-1.5
477
Tumor
-1.5
147
Tumor
-1.5
461
Tumor
-1.5
1041
Tumor
-1.5
715
Tumor
-1.5
943
Tumor
-1.5
823
Tumor
-1.5
641
Tumor
-1.5
423
Tumor
-1.5
963
Tumor
-1.5
978
Normal
-1.5
187
Tumor
-1.5
721
Tumor
-1.6
912
Normal
-1.6
925
Tumor
-1.6
1045
Tumor
-1.6
123
Tumor
-1.7
185
Tumor
-1.7
983
Tumor
-1.7
283
Tumor
-1.7
852
Normal
-1.7
221
Tumor
-1.7
483
Tumor
-1.7
433
Tumor
-1.8
777
Tumor
-1.8
171
Tumor
-1.8
527
Tumor
-1.8
953
Tumor
-1.8
727
Tumor
-1.8
493
Tumor
-1.9
213
Tumor
-1.9
785
Tumor
-1.9
211
Tumor
-1.9
915
Tumor
-1.9
125
Tumor
-1.9
447
Tumor
-1.9
951
Tumor
-1.9
425
Tumor
-2.0
354
Normal
-2.0
361
Tumor
-2.0
975
Tumor
-2.0
525
Tumor
-2.1
697
Tumor
-2.1
965
Tumor
-2.1
1042
Normal
-2.1
311
Tumor
-2.2
517
Tumor
-2.2
137
Tumor
-2.2
883
Tumor
-2.2
413
Tumor
-2.2
487
Tumor
-2.3
267
Tumor
-2.3
1025
Tumor
-2.3
391
Tumor
-2.4
481
Tumor
-2.4
535
Tumor
-2.4
388
Normal
-2.4
724
Normal
-2.4
741
Tumor
-2.4
713
Tumor
-2.5
571
Tumor
-2.5
1013
Tumor
-2.5
297
Tumor
-2.6
553
Tumor
-2.6
261
Tumor
-2.6
443
Tumor
-2.6
685
Tumor
-2.6
545
Tumor
-2.6
913
Tumor
-2.6
1031
Tumor
-2.7
135
Tumor
-2.7
537
Tumor
-2.7
277
Tumor
-2.7
695
Tumor
-2.8
817
Tumor
-2.8
435
Tumor
-2.8
533
Tumor
-2.8
257
Tumor
-2.8
921
Tumor
-2.9
557
Tumor
-2.9
867
Tumor
-2.9
343
Tumor
-2.9
923
Tumor
-2.9
271
Tumor
-2.9
473
Tumor
-2.9
285
Tumor
-2.9
743
Tumor
-2.9
471
Tumor
-2.9
873
Tumor
-2.9
567
Tumor
-3.0
573
Tumor
-3.0
367
Tumor
-3.1
375
Tumor
-3.1
231
Tumor
-3.1
341
Tumor
-3.2
445
Tumor
-3.3
351
Tumor
-3.4
141
Tumor
-3.4
523
Tumor
-3.4
131
Tumor
-3.5
331
Tumor
-3.5
661
Tumor
-3.5
357
Tumor
-3.6
665
Tumor
-3.7
815
Tumor
-3.8
313
Tumor
-3.9
663
Tumor
-3.9
395
Tumor
-4.1
387
Tumor
-4.1
1027
Tumor
-4.2
393
Tumor
-4.3
385
Tumor
-4.3
863
Tumor
-4.4
671
Tumor
-4.5
647
Tumor
-4.6
515
Tumor
-4.7
1021
Tumor
-5.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.