MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:67.5 nTPM
HPA Brain:218.2 nTPM
GTEx:67.5 nTPM
FANTOM5:213.5 Scaled Tags Per Million
Pig:55.5 nTPM
Mouse:87.5 nTPM
Allen mouse:1.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 218.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 186.4
2586 Male, age 75, left hemisphere 300.8
2828 Female, age 72, unknown 263.2
2666 Male, age 74, left hemisphere 216.2
1827 Male, age 72, unknown 179.1
1870 Female, age 42, unknown 175.1
1833 Male, age 53, unknown 171.9
1830 Male, age 51, unknown 168.8
2411 Female, age 72, unknown 136.5
2019 Male, age 18, unknown 135.7
2219 Male, age 76, both hemispheres 116.8
Dorsal raphe nucleus
nTPM: 197.7
2047 Male, age 72, unknown 239.4
1828 Male, age 53, unknown 228.6
2750 Male, age 76, both hemispheres 177.4
2016 Female, age 72, unknown 175.5
2298 Female, age 72, unknown 167.5
Inferior colliculus
nTPM: 164.3
2849 Male, age 72, unknown 187.2
1848 Female, age 42, unknown 169.0
1890 Male, age 53, unknown 166.9
2097 Female, age 72, unknown 134.1
Median raphe nucleus
nTPM: 177.3
2220 Male, age 76, midline 177.3
Periaquaductal grey, anterior
nTPM: 218.2
1947 Male, age 18, unknown 257.2
1795 Male, age 51, unknown 234.3
2502 Female, age 75, unknown 163.0
Periaquaductal grey, dorsal
nTPM: 202.8
2850 Male, age 76, both hemispheres 282.1
1831 Male, age 72, unknown 199.6
1840 Male, age 53, unknown 179.3
2464 Female, age 72, unknown 150.3
Periaquaductal grey, lateral
nTPM: 217.4
2140 Male, age 76, both hemispheres 276.9
2053 Male, age 18, unknown 213.9
2272 Male, age 74, both hemispheres 161.3
Pretectal area
nTPM: 195.2
2316 Male, age 76, right hemisphere 246.5
2825 Male, age 18, unknown 216.0
1817 Female, age 42, unknown 211.6
2407 Male, age 75, both hemispheres 208.0
1815 Male, age 53, unknown 202.7
1944 Female, age 72, unknown 202.2
2667 Female, age 75, unknown 181.5
2007 Male, age 72, unknown 173.6
1816 Male, age 51, unknown 173.1
2224 Female, age 72, unknown 170.6
2273 Male, age 74, both hemispheres 161.9
Red nucleus
nTPM: 194.2
2725 Female, age 75, unknown 234.3
2823 Male, age 76, right hemisphere 226.1
1865 Male, age 51, unknown 210.3
1954 Female, age 42, unknown 202.6
2584 Male, age 75, left hemisphere 195.7
2769 Male, age 72, unknown 193.1
1904 Male, age 53, unknown 191.5
2503 Female, age 72, unknown 190.8
2227 Male, age 72, unknown 189.2
1821 Female, age 72, unknown 187.5
2588 Male, age 74, left hemisphere 173.9
2785 Male, age 18, unknown 135.3
Substantia nigra
nTPM: 207.5
2665 Male, age 74, both hemispheres 293.8
2699 Male, age 18, unknown 286.4
1916 Female, age 42, unknown 222.6
2583 Male, age 75, right hemisphere 216.4
2590 Female, age 75, unknown 200.5
1851 Male, age 51, unknown 192.0
2409 Female, age 72, unknown 172.4
1889 Female, age 72, unknown 171.1
2241 Male, age 72, unknown 163.9
1941 Male, age 53, unknown 156.0
Superior colliculus
nTPM: 191.9
2664 Male, age 75, both hemispheres 238.6
2668 Female, age 75, unknown 221.8
1796 Male, age 53, unknown 207.1
2087 Female, age 72, unknown 202.2
1839 Male, age 51, unknown 189.7
1995 Male, age 72, unknown 187.5
2261 Male, age 18, unknown 187.2
1913 Female, age 42, unknown 177.4
2587 Male, age 74, left hemisphere 156.5
1895 Male, age 76, right hemisphere 150.8
Ventral tegmental area
nTPM: 176.1
2218 Male, age 76, both hemispheres 195.2
2021 Male, age 53, unknown 192.5
1942 Male, age 51, unknown 184.3
1915 Female, age 42, unknown 183.2
2410 Female, age 72, unknown 153.0
2223 Female, age 72, unknown 148.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 67.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 67.5
Samples: 139

Max nTPM: 206.0
Min nTPM: 6.2
Std nTPM: 36.8
Median nTPM: 58.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 206.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 203.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 182.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 169.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 166.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 165.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 149.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 148.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 146.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 142.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 122.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 213.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 213.5
FF:10158-103A5 76 years, female 213.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 55.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 55.5
Samples: 4

Max nTPM: 66.1
Min nTPM: 47.2
Sample A Female 48.2
Sample B Female 47.2
Sample C Male 66.1
Sample D Male 60.5
Midbrain
nTPM: 47.4
Samples: 4

Max nTPM: 56.2
Min nTPM: 43.4
Sample A Female 56.2
Sample B Female 43.8
Sample C Male 46.0
Sample D Male 43.4
Periaqueductal gray
nTPM: 49.2
Samples: 3

Max nTPM: 59.2
Min nTPM: 44.2
Sample B Female 44.2
Sample C Male 59.2
Sample D Male 44.2
Superior colliculi
nTPM: 37.2
Samples: 4

Max nTPM: 45.1
Min nTPM: 21.3
Sample A Female 38.3
Sample B Female 21.3
Sample C Male 45.1
Sample D Male 43.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 87.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 87.5
Samples: 4

Max nTPM: 91.4
Min nTPM: 84.4
Sample A Male 85.0
Sample B Male 84.4
Sample C Female 91.4
Sample D Female 89.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
100142525 Antisense, RP_110421_03_B04, Mouse strain C57BL/6J (56 days, male) 1.4
71015815 Antisense, RP_050725_02_H11, Mouse strain C57BL/6J (56 days, male) 1.2

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