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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMB10 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
54.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
318.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
238.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
216.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
211.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
183.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
177.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
173.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
172.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
169.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
149.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
148.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
147.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
147.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
144.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
134.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
133.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
132.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
126.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
120.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
120.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
119.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
117.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
116.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
115.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
115.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
112.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
111.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
111.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
109.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
109.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
107.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
105.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
103.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
102.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
102.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
99.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
97.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
96.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
95.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
94.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
93.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
92.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
91.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
91.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
91.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
90.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
89.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
89.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
88.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
88.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
88.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
87.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
86.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
85.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
85.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
85.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
84.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
84.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
84.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
83.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
83.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
83.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
82.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
82.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
81.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
81.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
80.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
80.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
79.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
79.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
77.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
77.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
77.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
77.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
77.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
76.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
76.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
76.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
75.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
75.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
75.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
74.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
72.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
72.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
72.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
71.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
70.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
70.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
69.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
69.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
68.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
68.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
68.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
68.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
67.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
67.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
67.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
67.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
66.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
65.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
65.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
65.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
65.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
64.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
64.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
64.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
63.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
63.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
62.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
62.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
62.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
62.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
62.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
62.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
61.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
61.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
60.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
60.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
59.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
59.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
59.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
58.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
58.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
57.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
57.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
57.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
57.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
57.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
57.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
56.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
56.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
56.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
55.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
55.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
54.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
54.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
54.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
54.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
54.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
53.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
53.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
53.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
52.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
52.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
52.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
52.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
52.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
52.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
52.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
51.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
51.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
51.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
51.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
51.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
51.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
50.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
50.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
50.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
49.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
49.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
49.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
49.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
49.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
49.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
49.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
48.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
48.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
48.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
48.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
48.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
47.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
47.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
47.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
46.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
46.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
46.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
46.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
45.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
45.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
45.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
45.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
44.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
44.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
44.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
44.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
43.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
43.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
42.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
42.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
42.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
41.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
41.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
41.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
41.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
40.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
40.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
40.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
40.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
39.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
39.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
39.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
39.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
39.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
39.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
39.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
39.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
39.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
39.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
38.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
38.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
38.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
38.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
38.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
38.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
38.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
37.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
37.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
37.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
37.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
37.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
37.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
37.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
36.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
36.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
36.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
36.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
36.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
36.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
35.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
35.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
35.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
35.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
35.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
35.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
34.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
34.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
34.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
34.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
34.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
34.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
33.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
33.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
33.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
33.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
32.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
32.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
32.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
32.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
32.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
31.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
31.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
31.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
31.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
31.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
31.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
31.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
30.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
30.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
30.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
30.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
30.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
30.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
29.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
29.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
29.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
29.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
29.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
29.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
29.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
28.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
28.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
28.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
28.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
28.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
28.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
27.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
27.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
27.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
27.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
26.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
26.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
26.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
26.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
26.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
26.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
26.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
26.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
25.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
25.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
25.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
24.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
24.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
24.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
24.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
24.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
24.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
24.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
24.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
23.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
23.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
23.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
23.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
23.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
22.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
22.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
22.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
22.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
22.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
22.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
21.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
21.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
21.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
21.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
21.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
21.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
20.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
20.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
20.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
20.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
19.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
19.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
19.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
19.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
18.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
18.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
18.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
18.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
18.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
17.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
16.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
16.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
16.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
14.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
14.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
13.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
13.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
13.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
12.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMB10 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
42.7
Number of samples
231
Samples
Sample
Description
TPM
DO45287
0 years, male, NA, stage:1, alive, 390 days
226.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
166.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
164.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
146.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
143.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
142.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
132.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
132.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
127.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
123.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
110.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
103.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
99.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
94.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
88.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
88.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
88.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
87.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
85.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
81.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
77.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
77.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
77.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
76.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
75.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
74.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
73.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
72.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
72.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
69.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
68.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
67.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
67.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
66.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
65.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
65.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
64.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
63.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
62.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
61.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
60.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
60.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
59.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
59.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
59.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
58.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
58.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
58.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
58.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
57.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
57.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
57.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
57.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
57.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
55.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
54.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
53.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
53.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
52.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
52.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
51.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
50.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
50.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
50.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
50.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
50.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
50.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
49.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
49.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
48.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
48.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
48.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
48.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
47.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
47.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
47.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
47.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
47.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
46.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
46.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
46.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
46.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
45.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
45.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
45.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
45.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
44.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
43.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
43.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
42.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
41.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
41.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
41.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
41.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
40.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
40.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
40.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
40.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
40.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
40.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
39.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
39.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
38.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
38.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
38.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
38.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
37.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
37.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
37.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
37.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
36.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
36.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
36.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
35.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
35.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
35.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
34.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
34.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
34.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
34.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
34.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
34.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
34.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
33.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
33.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
32.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
32.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
31.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
31.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
31.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
31.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
31.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
31.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
30.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
30.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
30.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
30.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
30.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
29.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
29.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
29.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
29.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
29.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
28.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
28.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
28.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
28.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
27.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
27.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
27.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
26.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
26.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
26.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
26.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
25.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
25.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
25.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
25.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
25.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
25.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
24.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
24.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
24.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
24.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
24.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
23.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
23.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
23.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
23.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
22.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
22.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
22.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
22.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
21.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
21.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
21.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
21.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
20.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
20.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
20.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
20.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
20.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
20.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
19.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
19.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
19.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
19.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
18.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
18.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
18.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
17.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
17.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
17.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
17.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
16.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
16.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
15.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
13.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
13.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
11.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
10.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
4.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
861
Tumor
1.1
724
Normal
1.0
188
Normal
1.0
966
Normal
1.0
434
Normal
1.0
755
Tumor
1.0
262
Normal
0.9
113
Tumor
0.9
914
Normal
0.8
211
Tumor
0.7
383
Tumor
0.7
366
Normal
0.7
432
Normal
0.7
213
Tumor
0.6
386
Normal
0.6
416
Normal
0.6
362
Normal
0.6
146
Normal
0.6
327
Tumor
0.6
1043
Tumor
0.5
661
Tumor
0.5
456
Normal
0.5
353
Tumor
0.5
628
Normal
0.5
126
Normal
0.5
147
Tumor
0.5
978
Normal
0.5
141
Tumor
0.5
865
Tumor
0.5
467
Tumor
0.5
468
Normal
0.5
777
Tumor
0.5
217
Tumor
0.5
857
Tumor
0.4
814
Normal
0.4
218
Normal
0.4
114
Normal
0.4
686
Normal
0.4
212
Normal
0.4
1031
Tumor
0.4
272
Normal
0.4
662
Normal
0.4
952
Normal
0.4
384
Normal
0.4
224
Normal
0.4
261
Tumor
0.4
666
Normal
0.4
917
Tumor
0.3
514
Normal
0.3
524
Normal
0.3
258
Normal
0.3
192
Normal
0.3
1045
Tumor
0.3
455
Tumor
0.3
756
Normal
0.3
516
Normal
0.3
627
Tumor
0.3
492
Normal
0.3
884
Normal
0.3
268
Normal
0.3
721
Tumor
0.3
387
Tumor
0.3
444
Normal
0.3
536
Normal
0.3
138
Normal
0.3
451
Tumor
0.3
185
Tumor
0.3
716
Normal
0.3
312
Normal
0.3
635
Tumor
0.3
955
Tumor
0.3
311
Tumor
0.3
925
Tumor
0.3
172
Normal
0.3
443
Tumor
0.3
195
Tumor
0.3
1042
Normal
0.3
852
Normal
0.2
487
Tumor
0.2
332
Normal
0.2
396
Normal
0.2
696
Normal
0.2
284
Normal
0.2
1046
Normal
0.2
364
Normal
0.2
663
Tumor
0.2
498
Normal
0.2
452
Normal
0.2
344
Normal
0.2
558
Normal
0.2
557
Tumor
0.2
376
Normal
0.2
136
Normal
0.2
298
Normal
0.2
574
Normal
0.2
214
Normal
0.2
823
Tumor
0.2
951
Tumor
0.2
1044
Normal
0.2
162
Normal
0.2
358
Normal
0.2
278
Normal
0.2
818
Normal
0.2
738
Normal
0.2
664
Normal
0.2
436
Normal
0.2
286
Normal
0.2
938
Normal
0.2
414
Normal
0.2
913
Tumor
0.2
778
Normal
0.2
956
Normal
0.2
464
Normal
0.2
148
Normal
0.2
528
Normal
0.2
883
Tumor
0.2
926
Normal
0.2
186
Normal
0.1
228
Normal
0.1
723
Tumor
0.1
1015
Tumor
0.1
741
Tumor
0.1
518
Normal
0.1
341
Tumor
0.1
824
Normal
0.1
858
Normal
0.1
954
Normal
0.1
328
Normal
0.1
385
Tumor
0.1
392
Normal
0.1
714
Normal
0.1
355
Tumor
0.1
873
Tumor
0.1
722
Normal
0.1
388
Normal
0.1
137
Tumor
0.1
672
Normal
0.1
428
Normal
0.1
816
Normal
0.1
727
Tumor
0.1
1022
Normal
0.1
191
Tumor
0.1
446
Normal
0.1
493
Tumor
0.1
786
Normal
0.1
424
Normal
0.1
415
Tumor
0.1
964
Normal
0.1
867
Tumor
0.1
111
Normal
0.1
616
Normal
0.1
1026
Normal
0.1
368
Normal
0.1
728
Normal
0.1
478
Normal
0.0
874
Normal
0.0
448
Normal
0.0
314
Normal
0.0
494
Normal
0.0
976
Normal
0.0
222
Normal
0.0
422
Normal
0.0
132
Normal
0.0
124
Normal
0.0
742
Normal
0.0
196
Normal
0.0
882
Normal
0.0
128
Normal
0.0
488
Normal
0.0
187
Tumor
0.0
394
Normal
0.0
538
Normal
0.0
526
Normal
0.0
564
Normal
0.0
497
Tumor
0.0
1016
Normal
0.0
232
Normal
0.0
395
Tumor
0.0
1028
Normal
0.0
352
Normal
0.0
356
Normal
0.0
617
Tumor
0.0
968
Normal
0.0
412
Normal
0.0
864
Normal
0.0
375
Tumor
0.0
563
Tumor
0.0
433
Tumor
-0.1
142
Normal
-0.1
466
Normal
-0.1
963
Tumor
-0.1
866
Normal
-0.1
618
Normal
-0.1
145
Tumor
-0.1
342
Normal
-0.1
472
Normal
-0.1
636
Normal
-0.1
922
Normal
-0.1
482
Normal
-0.1
535
Tumor
-0.1
698
Normal
-0.1
568
Normal
-0.1
461
Tumor
-0.1
984
Normal
-0.1
912
Normal
-0.1
365
Tumor
-0.1
642
Normal
-0.1
937
Tumor
-0.1
944
Normal
-0.1
447
Tumor
-0.1
958
Normal
-0.1
426
Normal
-0.2
916
Normal
-0.2
343
Tumor
-0.2
648
Normal
-0.2
161
Tumor
-0.2
813
Tumor
-0.2
277
Tumor
-0.2
297
Tumor
-0.2
1014
Normal
-0.2
354
Normal
-0.2
484
Normal
-0.2
868
Normal
-0.2
915
Tumor
-0.2
223
Tumor
-0.2
421
Tumor
-0.2
221
Tumor
-0.2
641
Tumor
-0.2
982
Normal
-0.2
474
Normal
-0.2
977
Tumor
-0.2
975
Tumor
-0.2
431
Tumor
-0.2
918
Normal
-0.2
546
Normal
-0.2
462
Normal
-0.2
878
Normal
-0.2
554
Normal
-0.2
862
Normal
-0.2
647
Tumor
-0.3
313
Tumor
-0.3
267
Tumor
-0.3
924
Normal
-0.3
572
Normal
-0.3
1032
Normal
-0.3
881
Tumor
-0.3
744
Normal
-0.3
527
Tumor
-0.3
361
Tumor
-0.3
525
Tumor
-0.3
127
Tumor
-0.3
471
Tumor
-0.3
1013
Tumor
-0.3
135
Tumor
-0.3
685
Tumor
-0.3
553
Tumor
-0.3
943
Tumor
-0.3
785
Tumor
-0.4
391
Tumor
-0.4
413
Tumor
-0.4
465
Tumor
-0.4
523
Tumor
-0.4
491
Tumor
-0.4
513
Tumor
-0.4
746
Normal
-0.4
534
Normal
-0.4
481
Tumor
-0.4
171
Tumor
-0.4
411
Tumor
-0.4
745
Tumor
-0.4
981
Tumor
-0.4
953
Tumor
-0.5
573
Tumor
-0.5
1027
Tumor
-0.5
957
Tumor
-0.5
427
Tumor
-0.5
271
Tumor
-0.5
125
Tumor
-0.5
817
Tumor
-0.5
697
Tumor
-0.6
665
Tumor
-0.6
713
Tumor
-0.6
283
Tumor
-0.6
123
Tumor
-0.6
231
Tumor
-0.6
851
Tumor
-0.6
367
Tumor
-0.6
695
Tumor
-0.6
423
Tumor
-0.6
445
Tumor
-0.6
567
Tumor
-0.7
863
Tumor
-0.7
615
Tumor
-0.7
923
Tumor
-0.7
671
Tumor
-0.7
715
Tumor
-0.7
737
Tumor
-0.7
463
Tumor
-0.7
331
Tumor
-0.7
112
Tumor
-0.7
393
Tumor
-0.8
477
Tumor
-0.8
425
Tumor
-0.8
983
Tumor
-0.8
227
Tumor
-0.8
363
Tumor
-0.8
1021
Tumor
-0.9
483
Tumor
-0.9
1025
Tumor
-0.9
357
Tumor
-0.9
815
Tumor
-1.0
435
Tumor
-1.0
257
Tumor
-1.0
515
Tumor
-1.0
351
Tumor
-1.0
533
Tumor
-1.0
1041
Tumor
-1.0
967
Tumor
-1.1
545
Tumor
-1.1
921
Tumor
-1.1
537
Tumor
-1.1
911
Tumor
-1.2
877
Tumor
-1.2
517
Tumor
-1.3
571
Tumor
-1.3
285
Tumor
-1.3
473
Tumor
-1.4
965
Tumor
-1.5
131
Tumor
-1.7
743
Tumor
-1.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
