MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.4 nTPM
HPA Brain:26.8 nTPM
GTEx:11.4 nTPM
FANTOM5:59.2 Scaled Tags Per Million
Pig:11.2 nTPM
Mouse:24.6 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 26.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.8
1870 Female, age 42, unknown 31.0
2019 Male, age 18, unknown 28.1
2411 Female, age 72, unknown 24.9
1827 Male, age 72, unknown 24.3
2666 Male, age 74, left hemisphere 24.3
1833 Male, age 53, unknown 24.2
2219 Male, age 76, both hemispheres 23.9
2586 Male, age 75, left hemisphere 23.0
1830 Male, age 51, unknown 22.9
2828 Female, age 72, unknown 21.6
Dorsal raphe nucleus
nTPM: 23.0
2047 Male, age 72, unknown 25.1
2016 Female, age 72, unknown 23.5
2750 Male, age 76, both hemispheres 23.4
2298 Female, age 72, unknown 23.0
1828 Male, age 53, unknown 20.2
Inferior colliculus
nTPM: 23.6
2097 Female, age 72, unknown 28.4
1848 Female, age 42, unknown 22.5
1890 Male, age 53, unknown 22.4
2849 Male, age 72, unknown 21.1
Median raphe nucleus
nTPM: 23.3
2220 Male, age 76, midline 23.3
Periaquaductal grey, anterior
nTPM: 23.7
1947 Male, age 18, unknown 24.4
2502 Female, age 75, unknown 23.5
1795 Male, age 51, unknown 23.2
Periaquaductal grey, dorsal
nTPM: 22.9
1831 Male, age 72, unknown 25.2
1840 Male, age 53, unknown 23.8
2464 Female, age 72, unknown 21.6
2850 Male, age 76, both hemispheres 21.0
Periaquaductal grey, lateral
nTPM: 24.7
2053 Male, age 18, unknown 29.4
2272 Male, age 74, both hemispheres 26.0
2140 Male, age 76, both hemispheres 18.8
Pretectal area
nTPM: 26.8
1944 Female, age 72, unknown 32.3
1817 Female, age 42, unknown 31.7
1816 Male, age 51, unknown 31.3
2007 Male, age 72, unknown 31.1
1815 Male, age 53, unknown 30.0
2224 Female, age 72, unknown 25.9
2273 Male, age 74, both hemispheres 25.2
2667 Female, age 75, unknown 24.1
2825 Male, age 18, unknown 21.4
2316 Male, age 76, right hemisphere 21.2
2407 Male, age 75, both hemispheres 20.1
Red nucleus
nTPM: 25.5
2503 Female, age 72, unknown 29.8
1821 Female, age 72, unknown 29.6
1865 Male, age 51, unknown 26.8
1904 Male, age 53, unknown 26.8
2823 Male, age 76, right hemisphere 26.2
1954 Female, age 42, unknown 25.8
2725 Female, age 75, unknown 25.4
2588 Male, age 74, left hemisphere 24.6
2227 Male, age 72, unknown 23.1
2785 Male, age 18, unknown 23.1
2769 Male, age 72, unknown 23.0
2584 Male, age 75, left hemisphere 21.9
Substantia nigra
nTPM: 23.2
1889 Female, age 72, unknown 31.1
2590 Female, age 75, unknown 23.4
1851 Male, age 51, unknown 23.3
1941 Male, age 53, unknown 23.2
2241 Male, age 72, unknown 23.0
2699 Male, age 18, unknown 22.4
2409 Female, age 72, unknown 22.2
2583 Male, age 75, right hemisphere 21.9
2665 Male, age 74, both hemispheres 21.0
1916 Female, age 42, unknown 20.1
Superior colliculus
nTPM: 25.5
1913 Female, age 42, unknown 28.2
2587 Male, age 74, left hemisphere 28.2
2668 Female, age 75, unknown 27.6
2087 Female, age 72, unknown 26.1
2261 Male, age 18, unknown 25.0
1895 Male, age 76, right hemisphere 24.5
1995 Male, age 72, unknown 24.5
1796 Male, age 53, unknown 23.9
1839 Male, age 51, unknown 23.5
2664 Male, age 75, both hemispheres 23.0
Ventral tegmental area
nTPM: 23.7
2410 Female, age 72, unknown 28.3
2223 Female, age 72, unknown 24.5
2021 Male, age 53, unknown 24.2
1942 Male, age 51, unknown 22.0
2218 Male, age 76, both hemispheres 21.8
1915 Female, age 42, unknown 21.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 11.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.4
Samples: 139

Max nTPM: 18.7
Min nTPM: 6.6
Std nTPM: 2.2
Median nTPM: 11.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 18.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 18.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 17.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 16.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 16.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 15.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 15.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 15.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 15.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 15.3
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 15.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 59.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 59.2
FF:10158-103A5 76 years, female 59.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 11.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.8
Samples: 4

Max nTPM: 10.9
Min nTPM: 8.4
Sample A Female 9.9
Sample B Female 10.9
Sample C Male 8.4
Sample D Male 10.1
Midbrain
nTPM: 11.2
Samples: 4

Max nTPM: 14.2
Min nTPM: 8.1
Sample A Female 14.2
Sample B Female 9.9
Sample C Male 8.1
Sample D Male 12.4
Periaqueductal gray
nTPM: 9.8
Samples: 3

Max nTPM: 11.9
Min nTPM: 8.5
Sample B Female 8.5
Sample C Male 9.0
Sample D Male 11.9
Superior colliculi
nTPM: 10.9
Samples: 4

Max nTPM: 12.6
Min nTPM: 7.7
Sample A Female 11.0
Sample B Female 12.6
Sample C Male 7.7
Sample D Male 12.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 24.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.6
Samples: 4

Max nTPM: 26.7
Min nTPM: 22.7
Sample A Male 26.7
Sample B Male 23.9
Sample C Female 22.7
Sample D Female 25.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
75990478 Antisense, RP_060608_01_C01, Mouse strain C57BL/6J (56 days, male) 0.3

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