We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DCTN1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
83.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
70.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
66.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
60.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
55.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
52.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
51.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
49.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
47.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
45.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
44.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
43.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
42.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
42.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
42.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
41.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
41.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
40.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
40.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
38.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
38.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
38.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
37.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
37.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
37.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
36.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
36.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
36.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
34.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
33.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
33.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
32.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
32.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
32.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
31.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
31.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
31.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
30.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
30.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
30.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
30.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
30.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
29.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
29.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
29.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
29.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
29.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
28.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
28.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
28.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
28.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
28.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
27.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
27.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
27.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
27.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
27.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
27.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
27.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
27.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
27.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
27.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
27.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
26.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
26.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
26.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
26.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
26.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
26.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
26.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
26.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
26.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
26.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
26.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
25.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
25.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
25.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
25.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
25.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
25.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
25.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
25.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
24.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
24.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
24.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
24.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
24.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
24.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
24.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
24.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
24.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
24.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
23.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
23.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
23.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
23.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
23.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
23.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
23.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
23.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
23.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
23.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
23.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
22.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
22.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
22.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
22.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
22.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
22.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
22.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
22.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
22.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
22.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
22.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
22.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
22.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
22.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
21.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
21.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
21.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
21.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
21.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
21.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
21.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
21.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
21.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
21.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
20.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
20.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
20.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
20.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
20.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
20.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
20.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
20.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
20.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
20.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
20.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
20.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
20.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
20.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
20.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
19.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
19.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
19.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
19.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
19.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
19.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
19.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
19.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
19.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
19.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
19.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
19.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
19.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
19.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
19.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
19.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
18.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
18.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
18.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
18.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
18.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
18.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
18.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
18.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
18.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
18.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
18.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
18.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
18.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
18.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
18.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
17.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
17.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
17.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
17.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
17.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
17.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
17.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
17.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
17.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
17.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
17.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
17.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
17.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
17.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
16.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
16.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
16.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
16.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
16.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
16.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
16.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
16.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
16.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
16.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
15.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
15.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
15.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
15.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
15.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
15.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
15.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
15.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
15.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
15.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
15.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
15.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
15.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
15.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
15.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
15.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
15.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
14.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
14.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
14.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
14.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
14.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
14.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
14.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
13.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
13.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
13.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
13.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
13.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
13.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
13.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
13.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
12.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
12.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
12.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
12.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
12.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
11.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
10.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DCTN1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.2
Number of samples
231
Samples
Sample
Description
TPM
DO45155
0 years, male, NA, stage:2, alive, 2160 days
70.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
51.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
50.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
50.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
44.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
42.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
41.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
41.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
40.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
36.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
36.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
35.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
35.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
35.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
34.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
34.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
34.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
34.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
34.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
34.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
33.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
33.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
33.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
32.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
32.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
31.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
31.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
31.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
30.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
30.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
30.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
30.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
30.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
30.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
30.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
30.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
29.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
29.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
29.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
29.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
29.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
29.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
29.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
28.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
28.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
28.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
28.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
27.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
27.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
27.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
27.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
27.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
27.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
27.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
27.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
26.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
26.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
26.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
25.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
25.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
25.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
25.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
25.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
25.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
25.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
25.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
25.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
25.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
25.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
24.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
24.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
24.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
24.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
24.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
24.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
24.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
24.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
24.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
23.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
23.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
23.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
23.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
23.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
23.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
23.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
23.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
23.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
22.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
22.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
22.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
22.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
22.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
22.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
22.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
22.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
22.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
22.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
22.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
22.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
21.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
21.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
21.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
21.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
21.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
21.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
21.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
21.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
21.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
20.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
20.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
20.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
20.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
20.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
20.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
20.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
20.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
20.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
20.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
20.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
20.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
20.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
20.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
20.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
19.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
19.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
19.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
19.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
19.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
19.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
19.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
19.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
19.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
19.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
19.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
19.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
19.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
19.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
19.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
18.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
18.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
18.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
18.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
18.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
18.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
18.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
18.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
18.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
17.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
17.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
17.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
17.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
17.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
17.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
17.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
17.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
17.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
17.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
17.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
16.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
16.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
16.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
16.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
16.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
16.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
16.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
16.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
16.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
16.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
15.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
15.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
15.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
15.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
15.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
15.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
15.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
15.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
15.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
15.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
15.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
14.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
14.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
13.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
12.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
11.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
0.7
953
Tumor
0.6
745
Tumor
0.5
921
Tumor
0.5
617
Tumor
0.5
741
Tumor
0.4
685
Tumor
0.4
952
Normal
0.4
917
Tumor
0.4
478
Normal
0.4
536
Normal
0.4
1022
Normal
0.3
695
Tumor
0.3
327
Tumor
0.3
957
Tumor
0.3
981
Tumor
0.3
516
Normal
0.3
916
Normal
0.3
1032
Normal
0.3
852
Normal
0.3
955
Tumor
0.3
1028
Normal
0.3
976
Normal
0.3
474
Normal
0.3
723
Tumor
0.3
966
Normal
0.3
1042
Normal
0.3
721
Tumor
0.3
958
Normal
0.3
147
Tumor
0.3
448
Normal
0.3
455
Tumor
0.2
714
Normal
0.2
1044
Normal
0.2
746
Normal
0.2
967
Tumor
0.2
558
Normal
0.2
716
Normal
0.2
923
Tumor
0.2
1043
Tumor
0.2
738
Normal
0.2
816
Normal
0.2
498
Normal
0.2
728
Normal
0.2
524
Normal
0.2
956
Normal
0.2
1026
Normal
0.2
924
Normal
0.2
737
Tumor
0.2
514
Normal
0.2
492
Normal
0.2
328
Normal
0.2
192
Normal
0.2
868
Normal
0.2
944
Normal
0.2
862
Normal
0.2
697
Tumor
0.2
686
Normal
0.2
212
Normal
0.2
938
Normal
0.2
412
Normal
0.2
922
Normal
0.2
224
Normal
0.2
978
Normal
0.2
878
Normal
0.2
355
Tumor
0.2
918
Normal
0.2
528
Normal
0.2
518
Normal
0.2
715
Tumor
0.2
472
Normal
0.2
884
Normal
0.2
494
Normal
0.2
311
Tumor
0.2
778
Normal
0.2
824
Normal
0.2
553
Tumor
0.2
965
Tumor
0.2
785
Tumor
0.2
968
Normal
0.2
491
Tumor
0.2
268
Normal
0.2
571
Tumor
0.2
982
Normal
0.2
858
Normal
0.2
214
Normal
0.2
882
Normal
0.2
698
Normal
0.2
416
Normal
0.2
567
Tumor
0.2
722
Normal
0.2
727
Tumor
0.2
818
Normal
0.1
444
Normal
0.1
482
Normal
0.1
873
Tumor
0.1
756
Normal
0.1
188
Normal
0.1
463
Tumor
0.1
864
Normal
0.1
742
Normal
0.1
755
Tumor
0.1
125
Tumor
0.1
954
Normal
0.1
926
Normal
0.1
914
Normal
0.1
488
Normal
0.1
146
Normal
0.1
484
Normal
0.1
434
Normal
0.1
364
Normal
0.1
1014
Normal
0.1
466
Normal
0.1
943
Tumor
0.1
912
Normal
0.1
228
Normal
0.1
142
Normal
0.1
356
Normal
0.1
866
Normal
0.1
386
Normal
0.1
546
Normal
0.1
925
Tumor
0.1
261
Tumor
0.1
468
Normal
0.1
1016
Normal
0.1
218
Normal
0.1
874
Normal
0.1
975
Tumor
0.1
462
Normal
0.1
877
Tumor
0.1
616
Normal
0.1
964
Normal
0.1
696
Normal
0.1
284
Normal
0.1
554
Normal
0.1
436
Normal
0.1
786
Normal
0.1
272
Normal
0.1
426
Normal
0.1
136
Normal
0.1
1046
Normal
0.1
477
Tumor
0.1
572
Normal
0.1
283
Tumor
0.1
312
Normal
0.1
526
Normal
0.1
413
Tumor
0.1
262
Normal
0.1
517
Tumor
0.1
132
Normal
0.1
456
Normal
0.1
424
Normal
0.1
534
Normal
0.1
984
Normal
0.1
493
Tumor
0.1
421
Tumor
0.1
422
Normal
0.1
278
Normal
0.1
428
Normal
0.1
196
Normal
0.1
881
Tumor
0.1
662
Normal
0.1
394
Normal
0.1
465
Tumor
0.1
415
Tumor
0.1
538
Normal
0.1
286
Normal
0.1
222
Normal
0.1
648
Normal
0.1
445
Tumor
0.1
162
Normal
0.1
1025
Tumor
0.1
128
Normal
0.0
615
Tumor
0.0
642
Normal
0.0
618
Normal
0.0
983
Tumor
0.0
211
Tumor
0.0
362
Normal
0.0
713
Tumor
0.0
368
Normal
0.0
223
Tumor
0.0
172
Normal
0.0
664
Normal
0.0
344
Normal
0.0
432
Normal
0.0
861
Tumor
0.0
414
Normal
0.0
232
Normal
0.0
815
Tumor
0.0
138
Normal
0.0
447
Tumor
0.0
661
Tumor
0.0
221
Tumor
0.0
171
Tumor
0.0
1031
Tumor
0.0
628
Normal
0.0
411
Tumor
0.0
363
Tumor
0.0
392
Normal
0.0
523
Tumor
0.0
126
Normal
0.0
148
Normal
0.0
111
Normal
0.0
525
Tumor
0.0
564
Normal
0.0
464
Normal
0.0
298
Normal
0.0
258
Normal
0.0
388
Normal
0.0
446
Normal
0.0
814
Normal
0.0
352
Normal
0.0
666
Normal
0.0
1045
Tumor
0.0
635
Tumor
0.0
672
Normal
0.0
568
Normal
0.0
384
Normal
0.0
513
Tumor
0.0
366
Normal
0.0
127
Tumor
0.0
1021
Tumor
0.0
467
Tumor
0.0
131
Tumor
0.0
396
Normal
0.0
813
Tumor
0.0
574
Normal
0.0
342
Normal
0.0
354
Normal
0.0
185
Tumor
0.0
124
Normal
0.0
563
Tumor
0.0
187
Tumor
0.0
452
Normal
0.0
851
Tumor
0.0
227
Tumor
0.0
744
Normal
0.0
332
Normal
0.0
537
Tumor
0.0
365
Tumor
0.0
114
Normal
0.0
351
Tumor
0.0
297
Tumor
0.0
358
Normal
0.0
217
Tumor
0.0
481
Tumor
-0.1
357
Tumor
-0.1
641
Tumor
-0.1
257
Tumor
-0.1
863
Tumor
-0.1
636
Normal
-0.1
951
Tumor
-0.1
376
Normal
-0.1
186
Normal
-0.1
533
Tumor
-0.1
435
Tumor
-0.1
545
Tumor
-0.1
314
Normal
-0.1
535
Tumor
-0.1
867
Tumor
-0.1
915
Tumor
-0.1
471
Tumor
-0.1
271
Tumor
-0.1
483
Tumor
-0.1
724
Normal
-0.1
277
Tumor
-0.1
647
Tumor
-0.1
451
Tumor
-0.1
393
Tumor
-0.1
911
Tumor
-0.1
353
Tumor
-0.1
361
Tumor
-0.1
231
Tumor
-0.1
515
Tumor
-0.1
433
Tumor
-0.1
213
Tumor
-0.1
473
Tumor
-0.1
817
Tumor
-0.1
141
Tumor
-0.1
857
Tumor
-0.1
963
Tumor
-0.1
777
Tumor
-0.1
135
Tumor
-0.1
387
Tumor
-0.1
391
Tumor
-0.1
883
Tumor
-0.1
195
Tumor
-0.1
557
Tumor
-0.2
385
Tumor
-0.2
443
Tumor
-0.2
375
Tumor
-0.2
823
Tumor
-0.2
423
Tumor
-0.2
977
Tumor
-0.2
113
Tumor
-0.2
145
Tumor
-0.2
285
Tumor
-0.2
671
Tumor
-0.2
267
Tumor
-0.2
343
Tumor
-0.2
1013
Tumor
-0.2
461
Tumor
-0.2
313
Tumor
-0.2
137
Tumor
-0.2
161
Tumor
-0.2
627
Tumor
-0.2
191
Tumor
-0.2
743
Tumor
-0.2
573
Tumor
-0.2
497
Tumor
-0.2
937
Tumor
-0.2
1015
Tumor
-0.2
112
Tumor
-0.2
367
Tumor
-0.2
341
Tumor
-0.2
527
Tumor
-0.3
427
Tumor
-0.3
383
Tumor
-0.3
431
Tumor
-0.3
425
Tumor
-0.3
123
Tumor
-0.4
395
Tumor
-0.4
663
Tumor
-0.4
1041
Tumor
-0.4
331
Tumor
-0.4
487
Tumor
-0.4
913
Tumor
-0.4
665
Tumor
-0.5
865
Tumor
-0.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
