MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.9 nTPM
HPA Brain:42.1 nTPM
GTEx:34.9 nTPM
FANTOM5:44.1 Scaled Tags Per Million
Mouse:30.4 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 42.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.8
2411 Female, age 72, unknown 44.2
2019 Male, age 18, unknown 38.4
1827 Male, age 72, unknown 36.9
1870 Female, age 42, unknown 36.0
2828 Female, age 72, unknown 35.3
2219 Male, age 76, both hemispheres 33.9
1830 Male, age 51, unknown 33.4
2586 Male, age 75, left hemisphere 31.5
1833 Male, age 53, unknown 31.3
2666 Male, age 74, left hemisphere 27.4
Dorsal raphe nucleus
nTPM: 38.3
2298 Female, age 72, unknown 47.6
1828 Male, age 53, unknown 39.0
2016 Female, age 72, unknown 37.2
2750 Male, age 76, both hemispheres 34.4
2047 Male, age 72, unknown 33.3
Inferior colliculus
nTPM: 33.8
2097 Female, age 72, unknown 38.9
1890 Male, age 53, unknown 34.7
2849 Male, age 72, unknown 30.9
1848 Female, age 42, unknown 30.7
Median raphe nucleus
nTPM: 35.6
2220 Male, age 76, midline 35.6
Periaquaductal grey, anterior
nTPM: 38.7
2502 Female, age 75, unknown 41.0
1795 Male, age 51, unknown 39.3
1947 Male, age 18, unknown 35.8
Periaquaductal grey, dorsal
nTPM: 34.4
2850 Male, age 76, both hemispheres 40.3
1831 Male, age 72, unknown 36.7
1840 Male, age 53, unknown 31.7
2464 Female, age 72, unknown 28.8
Periaquaductal grey, lateral
nTPM: 35.9
2272 Male, age 74, both hemispheres 40.9
2053 Male, age 18, unknown 36.1
2140 Male, age 76, both hemispheres 30.6
Pretectal area
nTPM: 39.3
1817 Female, age 42, unknown 44.8
1815 Male, age 53, unknown 44.1
2007 Male, age 72, unknown 42.0
2667 Female, age 75, unknown 41.9
2273 Male, age 74, both hemispheres 41.5
1816 Male, age 51, unknown 41.3
2316 Male, age 76, right hemisphere 40.5
2224 Female, age 72, unknown 39.4
1944 Female, age 72, unknown 36.1
2825 Male, age 18, unknown 33.0
2407 Male, age 75, both hemispheres 27.4
Red nucleus
nTPM: 40.7
1821 Female, age 72, unknown 51.1
1904 Male, age 53, unknown 45.5
2785 Male, age 18, unknown 44.6
2503 Female, age 72, unknown 44.2
1865 Male, age 51, unknown 43.4
2769 Male, age 72, unknown 40.9
1954 Female, age 42, unknown 40.3
2725 Female, age 75, unknown 40.2
2227 Male, age 72, unknown 40.1
2823 Male, age 76, right hemisphere 37.4
2588 Male, age 74, left hemisphere 31.2
2584 Male, age 75, left hemisphere 29.4
Substantia nigra
nTPM: 42.1
1916 Female, age 42, unknown 54.3
1851 Male, age 51, unknown 49.6
2409 Female, age 72, unknown 47.8
2699 Male, age 18, unknown 42.2
1889 Female, age 72, unknown 40.5
1941 Male, age 53, unknown 40.4
2241 Male, age 72, unknown 40.3
2590 Female, age 75, unknown 38.3
2583 Male, age 75, right hemisphere 35.4
2665 Male, age 74, both hemispheres 32.1
Superior colliculus
nTPM: 37.6
1913 Female, age 42, unknown 42.2
2087 Female, age 72, unknown 39.4
2587 Male, age 74, left hemisphere 39.4
1995 Male, age 72, unknown 38.4
1796 Male, age 53, unknown 38.2
2261 Male, age 18, unknown 37.7
1895 Male, age 76, right hemisphere 37.2
2668 Female, age 75, unknown 35.7
2664 Male, age 75, both hemispheres 35.1
1839 Male, age 51, unknown 32.5
Ventral tegmental area
nTPM: 39.2
2410 Female, age 72, unknown 45.4
1915 Female, age 42, unknown 42.0
2223 Female, age 72, unknown 40.2
2218 Male, age 76, both hemispheres 39.5
2021 Male, age 53, unknown 34.7
1942 Male, age 51, unknown 33.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 34.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.9
Samples: 139

Max nTPM: 85.8
Min nTPM: 13.5
Std nTPM: 11.7
Median nTPM: 32.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 85.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 74.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 67.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 63.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 63.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 59.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 57.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 55.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 55.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 55.0
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 54.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 44.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 44.1
FF:10158-103A5 76 years, female 44.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 30.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.4
Samples: 4

Max nTPM: 39.7
Min nTPM: 20.7
Sample A Male 39.7
Sample B Male 27.9
Sample C Female 20.7
Sample D Female 33.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68499177 Antisense, RP_050118_01_A12, Mouse strain C57BL/6J (56 days, male) 0.1

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