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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HLA-F is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
352.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
170.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
148.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
113.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
108.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
99.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
92.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
91.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
74.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
69.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
38.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
36.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
34.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
34.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
34.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
32.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
31.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
29.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
27.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
27.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
26.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
26.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
24.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
21.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
21.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
21.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
20.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
19.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
18.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
17.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
17.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
16.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
16.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
15.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
15.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
15.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
15.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
14.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
14.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
13.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
12.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
11.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
7.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
6.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
4.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
2.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
2.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
2.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
1.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
1.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
1.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
1.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
1.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
1.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
1.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
0.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
557
Tumor
1.6
434
Normal
1.6
213
Tumor
1.3
823
Tumor
1.3
467
Tumor
1.1
113
Tumor
1.1
917
Tumor
1.1
724
Normal
1.0
188
Normal
1.0
471
Tumor
1.0
524
Normal
1.0
262
Normal
0.9
861
Tumor
0.9
492
Normal
0.9
487
Tumor
0.9
327
Tumor
0.9
857
Tumor
0.9
937
Tumor
0.9
1031
Tumor
0.9
147
Tumor
0.8
915
Tumor
0.8
661
Tumor
0.7
211
Tumor
0.7
516
Normal
0.7
126
Normal
0.7
627
Tumor
0.7
966
Normal
0.7
686
Normal
0.6
217
Tumor
0.6
721
Tumor
0.6
978
Normal
0.6
386
Normal
0.6
311
Tumor
0.6
523
Tumor
0.6
755
Tumor
0.6
1015
Tumor
0.6
395
Tumor
0.6
433
Tumor
0.5
916
Normal
0.5
452
Normal
0.5
883
Tumor
0.5
914
Normal
0.5
922
Normal
0.5
867
Tumor
0.5
413
Tumor
0.5
385
Tumor
0.5
814
Normal
0.5
195
Tumor
0.5
628
Normal
0.5
366
Normal
0.5
267
Tumor
0.5
538
Normal
0.5
383
Tumor
0.5
553
Tumor
0.5
268
Normal
0.4
146
Normal
0.4
662
Normal
0.4
421
Tumor
0.4
191
Tumor
0.4
362
Normal
0.4
468
Normal
0.4
141
Tumor
0.4
185
Tumor
0.4
685
Tumor
0.4
138
Normal
0.4
1043
Tumor
0.4
977
Tumor
0.4
277
Tumor
0.4
218
Normal
0.4
443
Tumor
0.4
425
Tumor
0.4
913
Tumor
0.3
261
Tumor
0.3
953
Tumor
0.3
954
Normal
0.3
161
Tumor
0.3
491
Tumor
0.3
432
Normal
0.3
858
Normal
0.3
926
Normal
0.3
375
Tumor
0.3
666
Normal
0.3
536
Normal
0.3
396
Normal
0.3
343
Tumor
0.3
214
Normal
0.3
955
Tumor
0.3
956
Normal
0.3
162
Normal
0.3
963
Tumor
0.3
696
Normal
0.3
145
Tumor
0.3
368
Normal
0.3
272
Normal
0.3
777
Tumor
0.2
451
Tumor
0.2
125
Tumor
0.2
258
Normal
0.2
574
Normal
0.2
192
Normal
0.2
852
Normal
0.2
1042
Normal
0.2
114
Normal
0.2
353
Tumor
0.2
535
Tumor
0.2
414
Normal
0.2
187
Tumor
0.2
881
Tumor
0.2
111
Normal
0.2
222
Normal
0.2
212
Normal
0.2
416
Normal
0.2
358
Normal
0.2
384
Normal
0.1
344
Normal
0.1
493
Tumor
0.1
1028
Normal
0.1
224
Normal
0.1
135
Tumor
0.1
526
Normal
0.1
528
Normal
0.1
461
Tumor
0.1
422
Normal
0.1
1041
Tumor
0.1
865
Tumor
0.1
124
Normal
0.1
573
Tumor
0.1
952
Normal
0.1
951
Tumor
0.1
558
Normal
0.1
271
Tumor
0.1
464
Normal
0.1
142
Normal
0.1
918
Normal
0.1
424
Normal
0.1
232
Normal
0.1
376
Normal
0.1
127
Tumor
0.1
221
Tumor
0.1
648
Normal
0.1
446
Normal
0.1
478
Normal
0.1
1044
Normal
0.1
365
Tumor
0.0
445
Tumor
0.0
196
Normal
0.0
968
Normal
0.0
387
Tumor
0.0
647
Tumor
0.0
884
Normal
0.0
456
Normal
0.0
1027
Tumor
0.0
312
Normal
0.0
415
Tumor
0.0
394
Normal
0.0
514
Normal
0.0
328
Normal
0.0
498
Normal
0.0
136
Normal
0.0
128
Normal
0.0
1022
Normal
0.0
882
Normal
0.0
186
Normal
0.0
298
Normal
0.0
354
Normal
0.0
444
Normal
0.0
392
Normal
0.0
172
Normal
0.0
455
Tumor
0.0
352
Normal
0.0
554
Normal
0.0
518
Normal
0.0
938
Normal
0.0
816
Normal
0.0
727
Tumor
0.0
447
Tumor
0.0
393
Tumor
0.0
488
Normal
0.0
423
Tumor
-0.1
463
Tumor
-0.1
778
Normal
-0.1
925
Tumor
-0.1
564
Normal
-0.1
1046
Normal
-0.1
148
Normal
-0.1
137
Tumor
-0.1
863
Tumor
-0.1
818
Normal
-0.1
481
Tumor
-0.1
716
Normal
-0.1
672
Normal
-0.1
357
Tumor
-0.1
257
Tumor
-0.1
636
Normal
-0.1
866
Normal
-0.1
494
Normal
-0.1
698
Normal
-0.1
738
Normal
-0.1
231
Tumor
-0.1
975
Tumor
-0.1
426
Normal
-0.1
388
Normal
-0.1
635
Tumor
-0.1
641
Tumor
-0.1
132
Normal
-0.1
472
Normal
-0.1
466
Normal
-0.1
112
Tumor
-0.2
228
Normal
-0.2
427
Tumor
-0.2
355
Tumor
-0.2
663
Tumor
-0.2
361
Tumor
-0.2
1016
Normal
-0.2
958
Normal
-0.2
284
Normal
-0.2
563
Tumor
-0.2
448
Normal
-0.2
332
Normal
-0.2
1026
Normal
-0.2
695
Tumor
-0.2
462
Normal
-0.2
572
Normal
-0.2
824
Normal
-0.2
297
Tumor
-0.3
428
Normal
-0.3
982
Normal
-0.3
868
Normal
-0.3
342
Normal
-0.3
1045
Tumor
-0.3
664
Normal
-0.3
912
Normal
-0.3
278
Normal
-0.3
874
Normal
-0.3
482
Normal
-0.3
286
Normal
-0.3
878
Normal
-0.3
568
Normal
-0.3
367
Tumor
-0.3
474
Normal
-0.3
697
Tumor
-0.3
171
Tumor
-0.3
976
Normal
-0.3
497
Tumor
-0.3
723
Tumor
-0.3
525
Tumor
-0.3
1025
Tumor
-0.3
436
Normal
-0.3
864
Normal
-0.3
567
Tumor
-0.3
546
Normal
-0.4
618
Normal
-0.4
665
Tumor
-0.4
391
Tumor
-0.4
964
Normal
-0.4
313
Tumor
-0.4
534
Normal
-0.4
223
Tumor
-0.4
1014
Normal
-0.4
283
Tumor
-0.4
984
Normal
-0.4
642
Normal
-0.4
1032
Normal
-0.4
412
Normal
-0.4
1021
Tumor
-0.4
924
Normal
-0.4
944
Normal
-0.4
817
Tumor
-0.4
356
Normal
-0.4
745
Tumor
-0.4
737
Tumor
-0.4
364
Normal
-0.4
813
Tumor
-0.4
756
Normal
-0.4
314
Normal
-0.5
851
Tumor
-0.5
722
Normal
-0.5
785
Tumor
-0.5
862
Normal
-0.5
873
Tumor
-0.5
341
Tumor
-0.5
465
Tumor
-0.5
967
Tumor
-0.5
477
Tumor
-0.5
1013
Tumor
-0.5
943
Tumor
-0.5
715
Tumor
-0.6
484
Normal
-0.6
515
Tumor
-0.6
533
Tumor
-0.6
616
Normal
-0.6
227
Tumor
-0.6
923
Tumor
-0.6
615
Tumor
-0.6
527
Tumor
-0.6
431
Tumor
-0.6
744
Normal
-0.6
411
Tumor
-0.6
742
Normal
-0.6
617
Tumor
-0.6
714
Normal
-0.7
786
Normal
-0.7
877
Tumor
-0.7
545
Tumor
-0.7
537
Tumor
-0.7
123
Tumor
-0.7
981
Tumor
-0.7
671
Tumor
-0.7
815
Tumor
-0.8
473
Tumor
-0.8
435
Tumor
-0.8
713
Tumor
-0.8
921
Tumor
-0.8
513
Tumor
-0.8
728
Normal
-0.8
957
Tumor
-0.8
351
Tumor
-0.8
911
Tumor
-0.8
983
Tumor
-0.9
517
Tumor
-0.9
363
Tumor
-0.9
483
Tumor
-0.9
331
Tumor
-1.0
746
Normal
-1.0
965
Tumor
-1.0
285
Tumor
-1.0
741
Tumor
-1.1
571
Tumor
-1.1
131
Tumor
-1.4
743
Tumor
-1.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.