We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TBC1D8 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
48.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
44.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
42.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
41.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
39.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
37.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
33.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
31.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
30.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
27.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
25.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
24.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
23.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
23.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
22.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
21.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
20.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
20.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
20.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
18.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
17.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
17.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
17.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
16.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
16.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
16.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
16.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
16.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
16.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
15.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
15.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
12.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
11.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
11.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
10.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
10.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
10.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
10.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
6.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
6.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
5.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
5.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
2.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TBC1D8 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.3
Number of samples
231
Samples
Sample
Description
TPM
DO45305
0 years, male, NA, stage:4, alive, 300 days
96.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
76.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
70.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
66.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
57.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
56.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
53.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
52.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
49.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
46.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
45.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
44.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
42.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
39.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
37.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
36.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
35.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
33.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
33.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
32.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
32.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
32.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
30.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
29.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
29.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
29.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
28.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
28.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
28.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
27.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
25.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
25.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
25.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
24.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
24.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
24.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
23.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
23.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
23.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
23.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
23.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
23.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
22.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
22.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
22.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
22.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
22.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
21.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
21.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
21.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
21.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
21.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
20.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
20.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
20.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
20.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
20.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
19.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
19.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
19.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
19.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
19.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
19.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
18.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
18.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
17.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
17.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
17.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
17.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
17.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
17.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
17.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
17.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
17.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
17.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
17.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
17.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
16.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
16.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
16.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
16.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
16.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
15.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
15.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
15.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
14.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
14.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
14.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
13.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
13.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
13.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
13.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
12.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
12.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
12.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
12.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
9.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
9.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
7.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
3.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
427
Tumor
0.7
1032
Normal
0.7
1022
Normal
0.6
445
Tumor
0.6
463
Tumor
0.6
428
Normal
0.5
567
Tumor
0.5
422
Normal
0.5
447
Tumor
0.5
146
Normal
0.5
137
Tumor
0.5
745
Tumor
0.5
912
Normal
0.5
425
Tumor
0.5
147
Tumor
0.5
414
Normal
0.4
914
Normal
0.4
635
Tumor
0.4
478
Normal
0.4
132
Normal
0.4
112
Tumor
0.4
444
Normal
0.4
332
Normal
0.4
416
Normal
0.4
818
Normal
0.4
285
Tumor
0.4
221
Tumor
0.4
1026
Normal
0.4
278
Normal
0.4
312
Normal
0.4
136
Normal
0.4
424
Normal
0.4
138
Normal
0.4
298
Normal
0.4
384
Normal
0.4
125
Tumor
0.4
1041
Tumor
0.3
426
Normal
0.3
884
Normal
0.3
314
Normal
0.3
187
Tumor
0.3
284
Normal
0.3
815
Tumor
0.3
434
Normal
0.3
527
Tumor
0.3
1014
Normal
0.3
412
Normal
0.3
563
Tumor
0.3
128
Normal
0.3
755
Tumor
0.3
188
Normal
0.3
328
Normal
0.3
366
Normal
0.3
572
Normal
0.3
383
Tumor
0.3
978
Normal
0.3
113
Tumor
0.3
423
Tumor
0.3
471
Tumor
0.3
356
Normal
0.3
641
Tumor
0.3
327
Tumor
0.3
364
Normal
0.3
858
Normal
0.2
224
Normal
0.2
126
Normal
0.2
145
Tumor
0.2
514
Normal
0.2
1016
Normal
0.2
1028
Normal
0.2
124
Normal
0.2
142
Normal
0.2
135
Tumor
0.2
433
Tumor
0.2
375
Tumor
0.2
666
Normal
0.2
1043
Tumor
0.2
975
Tumor
0.2
344
Normal
0.2
376
Normal
0.2
365
Tumor
0.2
1042
Normal
0.2
982
Normal
0.2
362
Normal
0.2
981
Tumor
0.2
272
Normal
0.2
536
Normal
0.2
331
Tumor
0.2
455
Tumor
0.2
882
Normal
0.2
111
Normal
0.2
983
Tumor
0.2
558
Normal
0.2
538
Normal
0.2
852
Normal
0.2
574
Normal
0.2
352
Normal
0.2
568
Normal
0.2
573
Tumor
0.2
114
Normal
0.2
526
Normal
0.2
727
Tumor
0.2
862
Normal
0.2
393
Tumor
0.2
185
Tumor
0.2
642
Normal
0.2
533
Tumor
0.2
354
Normal
0.2
391
Tumor
0.2
722
Normal
0.2
881
Tumor
0.2
212
Normal
0.2
192
Normal
0.2
984
Normal
0.2
232
Normal
0.2
415
Tumor
0.1
421
Tumor
0.1
524
Normal
0.1
756
Normal
0.1
554
Normal
0.1
432
Normal
0.1
431
Tumor
0.1
528
Normal
0.1
868
Normal
0.1
864
Normal
0.1
388
Normal
0.1
217
Tumor
0.1
685
Tumor
0.1
878
Normal
0.1
368
Normal
0.1
286
Normal
0.1
268
Normal
0.1
816
Normal
0.1
297
Tumor
0.1
261
Tumor
0.1
716
Normal
0.1
358
Normal
0.1
262
Normal
0.1
564
Normal
0.1
627
Tumor
0.1
742
Normal
0.1
746
Normal
0.1
617
Tumor
0.1
162
Normal
0.1
477
Tumor
0.1
468
Normal
0.1
976
Normal
0.1
1027
Tumor
0.1
186
Normal
0.1
786
Normal
0.1
467
Tumor
0.1
616
Normal
0.1
392
Normal
0.1
258
Normal
0.1
172
Normal
0.1
1015
Tumor
0.1
446
Normal
0.1
954
Normal
0.1
465
Tumor
0.1
737
Tumor
0.1
557
Tumor
0.1
474
Normal
0.1
665
Tumor
0.1
396
Normal
0.1
723
Tumor
0.1
824
Normal
0.0
662
Normal
0.0
926
Normal
0.0
924
Normal
0.0
728
Normal
0.0
696
Normal
0.0
778
Normal
0.0
743
Tumor
0.0
342
Normal
0.0
956
Normal
0.0
148
Normal
0.0
451
Tumor
0.0
482
Normal
0.0
535
Tumor
0.0
744
Normal
0.0
386
Normal
0.0
518
Normal
0.0
648
Normal
0.0
686
Normal
0.0
228
Normal
0.0
452
Normal
0.0
361
Tumor
0.0
814
Normal
0.0
211
Tumor
0.0
525
Tumor
0.0
545
Tumor
0.0
394
Normal
0.0
628
Normal
0.0
866
Normal
0.0
977
Tumor
0.0
916
Normal
0.0
913
Tumor
0.0
966
Normal
0.0
873
Tumor
0.0
922
Normal
0.0
851
Tumor
0.0
618
Normal
0.0
311
Tumor
0.0
466
Normal
0.0
546
Normal
0.0
127
Tumor
0.0
367
Tumor
0.0
461
Tumor
0.0
481
Tumor
0.0
938
Normal
0.0
918
Normal
0.0
131
Tumor
0.0
313
Tumor
0.0
513
Tumor
0.0
714
Normal
0.0
161
Tumor
0.0
534
Normal
0.0
141
Tumor
0.0
436
Normal
0.0
464
Normal
-0.1
672
Normal
-0.1
857
Tumor
-0.1
952
Normal
-0.1
271
Tumor
-0.1
785
Tumor
-0.1
861
Tumor
-0.1
663
Tumor
-0.1
738
Normal
-0.1
515
Tumor
-0.1
456
Normal
-0.1
874
Normal
-0.1
813
Tumor
-0.1
218
Normal
-0.1
353
Tumor
-0.1
958
Normal
-0.1
413
Tumor
-0.1
664
Normal
-0.1
443
Tumor
-0.1
523
Tumor
-0.1
214
Normal
-0.1
195
Tumor
-0.1
411
Tumor
-0.1
721
Tumor
-0.1
472
Normal
-0.1
697
Tumor
-0.1
223
Tumor
-0.1
191
Tumor
-0.1
343
Tumor
-0.1
571
Tumor
-0.1
462
Normal
-0.1
357
Tumor
-0.1
283
Tumor
-0.1
395
Tumor
-0.1
498
Normal
-0.1
741
Tumor
-0.1
917
Tumor
-0.1
964
Normal
-0.1
363
Tumor
-0.1
817
Tumor
-0.1
213
Tumor
-0.1
867
Tumor
-0.1
435
Tumor
-0.1
877
Tumor
-0.1
715
Tumor
-0.1
944
Normal
-0.1
713
Tumor
-0.1
537
Tumor
-0.2
615
Tumor
-0.2
1025
Tumor
-0.2
516
Normal
-0.2
823
Tumor
-0.2
955
Tumor
-0.2
968
Normal
-0.2
387
Tumor
-0.2
257
Tumor
-0.2
636
Normal
-0.2
488
Normal
-0.2
448
Normal
-0.2
1046
Normal
-0.2
943
Tumor
-0.2
123
Tumor
-0.2
553
Tumor
-0.2
1044
Normal
-0.2
492
Normal
-0.2
957
Tumor
-0.2
921
Tumor
-0.2
671
Tumor
-0.2
863
Tumor
-0.2
1013
Tumor
-0.2
967
Tumor
-0.2
963
Tumor
-0.2
883
Tumor
-0.2
925
Tumor
-0.2
915
Tumor
-0.3
484
Normal
-0.3
222
Normal
-0.3
953
Tumor
-0.3
724
Normal
-0.3
196
Normal
-0.3
341
Tumor
-0.3
497
Tumor
-0.3
171
Tumor
-0.3
1021
Tumor
-0.3
494
Normal
-0.3
227
Tumor
-0.3
473
Tumor
-0.3
385
Tumor
-0.3
661
Tumor
-0.3
277
Tumor
-0.3
647
Tumor
-0.3
231
Tumor
-0.3
937
Tumor
-0.3
355
Tumor
-0.3
695
Tumor
-0.4
911
Tumor
-0.4
1031
Tumor
-0.5
267
Tumor
-0.5
517
Tumor
-0.5
865
Tumor
-0.5
491
Tumor
-0.5
698
Normal
-0.5
923
Tumor
-0.5
777
Tumor
-0.5
1045
Tumor
-0.5
483
Tumor
-0.5
965
Tumor
-0.5
351
Tumor
-0.5
493
Tumor
-0.5
951
Tumor
-0.9
487
Tumor
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
