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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MRPS18B is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
73.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
269.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
225.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
222.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
207.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
201.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
200.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
190.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
189.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
185.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
182.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
176.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
168.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
159.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
159.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
147.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
146.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
145.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
142.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
141.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
140.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
139.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
138.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
136.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
132.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
132.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
129.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
126.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
125.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
124.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
122.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
122.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
121.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
120.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
120.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
120.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
119.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
118.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
118.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
117.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
116.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
116.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
114.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
114.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
113.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
112.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
112.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
111.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
110.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
110.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
109.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
109.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
109.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
108.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
108.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
107.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
107.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
106.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
106.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
105.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
104.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
104.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
104.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
103.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
103.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
102.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
102.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
101.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
100.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
100.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
100.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
98.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
98.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
98.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
97.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
96.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
96.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
95.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
95.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
95.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
95.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
94.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
93.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
92.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
92.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
92.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
91.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
91.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
91.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
90.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
89.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
89.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
89.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
89.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
89.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
89.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
88.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
88.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
88.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
88.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
88.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
87.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
87.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
87.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
86.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
86.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
86.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
86.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
86.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
86.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
86.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
86.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
84.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
84.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
84.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
84.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
84.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
83.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
83.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
83.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
82.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
82.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
82.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
82.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
81.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
81.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
80.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
80.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
80.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
80.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
80.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
79.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
79.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
79.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
79.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
79.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
79.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
79.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
78.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
77.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
77.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
77.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
77.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
76.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
76.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
76.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
75.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
75.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
74.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
74.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
73.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
73.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
73.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
72.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
72.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
72.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
71.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
71.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
71.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
71.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
71.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
70.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
70.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
70.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
70.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
70.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
70.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
69.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
69.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
69.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
69.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
69.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
69.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
69.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
69.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
68.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
68.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
68.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
68.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
68.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
68.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
67.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
67.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
67.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
67.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
67.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
66.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
65.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
65.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
65.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
65.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
65.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
65.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
65.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
64.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
64.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
63.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
63.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
62.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
62.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
62.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
61.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
61.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
61.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
60.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
60.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
60.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
60.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
60.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
60.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
60.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
59.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
59.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
59.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
59.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
59.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
58.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
58.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
58.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
58.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
58.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
57.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
57.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
57.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
57.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
57.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
57.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
56.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
56.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
56.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
55.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
55.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
55.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
55.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
55.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
55.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
55.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
55.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
54.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
54.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
54.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
54.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
54.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
54.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
54.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
53.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
53.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
53.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
52.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
52.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
52.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
51.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
51.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
51.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
50.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
50.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
50.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
50.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
50.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
50.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
50.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
50.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
49.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
49.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
49.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
49.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
49.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
49.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
48.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
48.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
48.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
48.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
47.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
47.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
47.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
47.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
46.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
46.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
46.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
46.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
46.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
46.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
46.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
45.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
45.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
45.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
44.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
44.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
44.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
44.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
44.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
44.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
44.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
44.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
44.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
44.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
43.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
43.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
43.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
43.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
43.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
42.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
42.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
42.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
41.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
41.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
41.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
41.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
41.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
41.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
40.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
40.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
40.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
39.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
39.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
39.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
39.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
38.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
38.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
38.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
38.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
38.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
37.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
37.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
37.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
37.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
37.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
37.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
36.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
36.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
36.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
35.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
35.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
35.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
34.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
34.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
33.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
33.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
33.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
32.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
32.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
32.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
30.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
30.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
29.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
27.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
26.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
25.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
25.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
24.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
22.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
22.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
18.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
18.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
15.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
13.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
12.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
10.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
10.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MRPS18B is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
56.1
Number of samples
231
Samples
Sample
Description
TPM
DO50811
0 years, male, NA, stage:1, alive, 450 days
215.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
207.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
199.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
194.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
181.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
164.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
160.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
154.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
147.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
143.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
138.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
136.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
135.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
127.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
119.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
114.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
112.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
110.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
108.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
107.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
104.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
104.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
101.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
97.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
95.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
94.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
93.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
93.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
93.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
92.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
91.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
90.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
90.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
90.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
87.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
86.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
81.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
78.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
76.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
74.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
74.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
74.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
74.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
73.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
72.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
72.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
71.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
71.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
70.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
70.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
70.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
69.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
69.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
69.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
67.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
66.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
66.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
65.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
65.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
64.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
64.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
64.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
63.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
63.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
63.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
63.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
62.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
62.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
61.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
61.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
60.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
59.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
58.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
58.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
57.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
57.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
57.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
56.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
55.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
53.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
53.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
53.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
53.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
52.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
52.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
52.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
52.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
52.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
52.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
52.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
51.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
51.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
50.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
50.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
50.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
50.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
49.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
49.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
49.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
49.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
49.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
49.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
49.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
49.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
49.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
48.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
48.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
48.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
48.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
48.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
47.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
47.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
47.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
46.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
46.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
46.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
46.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
45.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
45.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
44.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
44.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
44.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
44.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
44.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
43.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
43.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
42.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
42.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
42.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
42.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
42.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
42.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
42.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
41.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
41.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
41.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
40.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
40.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
40.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
40.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
40.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
39.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
39.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
39.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
38.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
38.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
38.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
38.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
38.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
37.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
37.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
37.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
36.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
36.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
36.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
36.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
36.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
36.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
36.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
36.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
36.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
35.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
35.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
35.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
35.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
34.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
34.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
34.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
34.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
34.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
34.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
33.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
33.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
33.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
33.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
32.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
32.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
32.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
32.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
31.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
31.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
31.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
31.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
31.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
31.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
31.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
31.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
31.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
31.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
30.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
30.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
29.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
29.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
29.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
29.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
28.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
28.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
28.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
28.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
28.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
28.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
27.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
26.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
26.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
26.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
26.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
26.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
26.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
25.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
25.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
24.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
24.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
24.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
23.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
23.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
23.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
22.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
22.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
22.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
22.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
21.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
21.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
20.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
20.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
20.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
19.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
19.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
16.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
15.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
473
Tumor
1.6
411
Tumor
1.0
1041
Tumor
1.0
227
Tumor
1.0
865
Tumor
0.9
231
Tumor
0.9
361
Tumor
0.9
967
Tumor
0.8
553
Tumor
0.8
957
Tumor
0.8
537
Tumor
0.7
695
Tumor
0.7
915
Tumor
0.7
861
Tumor
0.7
571
Tumor
0.7
477
Tumor
0.6
435
Tumor
0.6
557
Tumor
0.6
267
Tumor
0.6
745
Tumor
0.6
123
Tumor
0.6
423
Tumor
0.6
741
Tumor
0.6
965
Tumor
0.6
1013
Tumor
0.6
517
Tumor
0.5
713
Tumor
0.5
357
Tumor
0.5
171
Tumor
0.5
533
Tumor
0.5
525
Tumor
0.5
823
Tumor
0.5
685
Tumor
0.5
883
Tumor
0.5
363
Tumor
0.5
355
Tumor
0.5
867
Tumor
0.5
483
Tumor
0.5
755
Tumor
0.5
877
Tumor
0.4
127
Tumor
0.4
715
Tumor
0.4
567
Tumor
0.4
221
Tumor
0.4
951
Tumor
0.4
393
Tumor
0.4
367
Tumor
0.4
937
Tumor
0.4
145
Tumor
0.4
953
Tumor
0.4
147
Tumor
0.4
743
Tumor
0.4
223
Tumor
0.4
313
Tumor
0.4
981
Tumor
0.3
427
Tumor
0.3
1025
Tumor
0.3
911
Tumor
0.3
327
Tumor
0.3
663
Tumor
0.3
497
Tumor
0.3
977
Tumor
0.3
913
Tumor
0.3
257
Tumor
0.3
573
Tumor
0.3
395
Tumor
0.3
1021
Tumor
0.3
387
Tumor
0.3
277
Tumor
0.2
635
Tumor
0.2
617
Tumor
0.2
351
Tumor
0.2
1042
Normal
0.2
641
Tumor
0.2
923
Tumor
0.2
271
Tumor
0.2
721
Tumor
0.2
958
Normal
0.2
616
Normal
0.2
926
Normal
0.2
112
Tumor
0.2
353
Tumor
0.2
465
Tumor
0.1
925
Tumor
0.1
285
Tumor
0.1
514
Normal
0.1
618
Normal
0.1
817
Tumor
0.1
365
Tumor
0.1
471
Tumor
0.1
487
Tumor
0.1
195
Tumor
0.1
642
Normal
0.1
493
Tumor
0.1
331
Tumor
0.1
526
Normal
0.1
1031
Tumor
0.1
131
Tumor
0.1
463
Tumor
0.1
696
Normal
0.1
224
Normal
0.1
535
Tumor
0.1
261
Tumor
0.1
343
Tumor
0.1
513
Tumor
0.1
474
Normal
0.1
665
Tumor
0.1
416
Normal
0.1
615
Tumor
0.1
451
Tumor
0.1
187
Tumor
0.1
777
Tumor
0.1
963
Tumor
0.1
356
Normal
0.1
914
Normal
0.1
868
Normal
0.1
433
Tumor
0.1
564
Normal
0.0
482
Normal
0.0
258
Normal
0.0
212
Normal
0.0
472
Normal
0.0
728
Normal
0.0
628
Normal
0.0
314
Normal
0.0
964
Normal
0.0
516
Normal
0.0
462
Normal
0.0
278
Normal
0.0
286
Normal
0.0
162
Normal
0.0
481
Tumor
0.0
983
Tumor
0.0
328
Normal
0.0
554
Normal
0.0
213
Tumor
0.0
727
Tumor
0.0
467
Tumor
0.0
756
Normal
0.0
1028
Normal
0.0
312
Normal
0.0
916
Normal
0.0
341
Tumor
0.0
148
Normal
0.0
413
Tumor
0.0
191
Tumor
0.0
132
Normal
0.0
385
Tumor
0.0
428
Normal
0.0
851
Tumor
0.0
534
Normal
0.0
698
Normal
0.0
114
Normal
0.0
523
Tumor
0.0
742
Normal
0.0
982
Normal
0.0
724
Normal
0.0
956
Normal
0.0
391
Tumor
0.0
912
Normal
0.0
527
Tumor
0.0
858
Normal
0.0
188
Normal
0.0
1014
Normal
0.0
723
Tumor
0.0
484
Normal
0.0
222
Normal
0.0
284
Normal
0.0
636
Normal
0.0
422
Normal
0.0
881
Tumor
0.0
714
Normal
-0.1
862
Normal
-0.1
873
Tumor
-0.1
572
Normal
-0.1
211
Tumor
-0.1
627
Tumor
-0.1
272
Normal
-0.1
968
Normal
-0.1
1043
Tumor
-0.1
671
Tumor
-0.1
975
Tumor
-0.1
1022
Normal
-0.1
436
Normal
-0.1
778
Normal
-0.1
944
Normal
-0.1
816
Normal
-0.1
815
Tumor
-0.1
196
Normal
-0.1
722
Normal
-0.1
546
Normal
-0.1
464
Normal
-0.1
952
Normal
-0.1
431
Tumor
-0.1
113
Tumor
-0.1
128
Normal
-0.1
172
Normal
-0.1
452
Normal
-0.1
388
Normal
-0.1
978
Normal
-0.1
298
Normal
-0.1
824
Normal
-0.1
786
Normal
-0.1
491
Tumor
-0.1
738
Normal
-0.1
228
Normal
-0.1
568
Normal
-0.1
648
Normal
-0.1
918
Normal
-0.1
494
Normal
-0.1
185
Tumor
-0.1
375
Tumor
-0.1
466
Normal
-0.1
136
Normal
-0.1
415
Tumor
-0.1
446
Normal
-0.2
364
Normal
-0.2
528
Normal
-0.2
874
Normal
-0.2
214
Normal
-0.2
864
Normal
-0.2
647
Tumor
-0.2
434
Normal
-0.2
716
Normal
-0.2
488
Normal
-0.2
232
Normal
-0.2
186
Normal
-0.2
424
Normal
-0.2
297
Tumor
-0.2
358
Normal
-0.2
161
Tumor
-0.2
146
Normal
-0.2
746
Normal
-0.2
976
Normal
-0.2
1026
Normal
-0.2
111
Normal
-0.2
1032
Normal
-0.2
332
Normal
-0.2
468
Normal
-0.2
344
Normal
-0.2
938
Normal
-0.2
432
Normal
-0.2
426
Normal
-0.2
785
Tumor
-0.2
664
Normal
-0.2
1044
Normal
-0.2
311
Tumor
-0.2
866
Normal
-0.2
217
Tumor
-0.2
518
Normal
-0.2
686
Normal
-0.2
456
Normal
-0.2
818
Normal
-0.2
386
Normal
-0.2
142
Normal
-0.2
124
Normal
-0.2
126
Normal
-0.2
1016
Normal
-0.2
461
Tumor
-0.2
268
Normal
-0.2
661
Tumor
-0.2
396
Normal
-0.2
444
Normal
-0.2
141
Tumor
-0.2
966
Normal
-0.3
882
Normal
-0.3
352
Normal
-0.3
412
Normal
-0.3
138
Normal
-0.3
984
Normal
-0.3
125
Tumor
-0.3
545
Tumor
-0.3
697
Tumor
-0.3
878
Normal
-0.3
392
Normal
-0.3
366
Normal
-0.3
342
Normal
-0.3
954
Normal
-0.3
376
Normal
-0.3
922
Normal
-0.3
955
Tumor
-0.3
924
Normal
-0.3
574
Normal
-0.3
538
Normal
-0.3
283
Tumor
-0.3
383
Tumor
-0.3
524
Normal
-0.3
1046
Normal
-0.3
1027
Tumor
-0.3
135
Tumor
-0.3
884
Normal
-0.3
394
Normal
-0.4
362
Normal
-0.4
1015
Tumor
-0.4
558
Normal
-0.4
662
Normal
-0.4
354
Normal
-0.4
414
Normal
-0.4
498
Normal
-0.4
262
Normal
-0.4
666
Normal
-0.4
515
Tumor
-0.4
852
Normal
-0.4
814
Normal
-0.4
744
Normal
-0.4
445
Tumor
-0.4
421
Tumor
-0.4
425
Tumor
-0.4
368
Normal
-0.4
737
Tumor
-0.4
218
Normal
-0.4
443
Tumor
-0.4
857
Tumor
-0.4
137
Tumor
-0.4
447
Tumor
-0.5
813
Tumor
-0.5
478
Normal
-0.5
448
Normal
-0.5
917
Tumor
-0.5
1045
Tumor
-0.5
563
Tumor
-0.5
943
Tumor
-0.5
492
Normal
-0.5
455
Tumor
-0.5
192
Normal
-0.5
672
Normal
-0.5
384
Normal
-0.6
536
Normal
-0.6
921
Tumor
-0.6
863
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
