MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.5 nTPM
HPA Brain:7.5 nTPM
GTEx:38.5 nTPM
FANTOM5:53.0 Scaled Tags Per Million
Pig:53.1 nTPM
Mouse:71.8 nTPM
Allen mouse:6.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 7.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 6.2
2019 Male, age 18, unknown 9.5
2586 Male, age 75, left hemisphere 8.1
1827 Male, age 72, unknown 7.2
2828 Female, age 72, unknown 6.5
1870 Female, age 42, unknown 5.6
1830 Male, age 51, unknown 5.4
2666 Male, age 74, left hemisphere 5.4
2219 Male, age 76, both hemispheres 5.3
2411 Female, age 72, unknown 4.8
1833 Male, age 53, unknown 4.5
Dorsal raphe nucleus
nTPM: 5.4
1828 Male, age 53, unknown 7.4
2298 Female, age 72, unknown 5.6
2750 Male, age 76, both hemispheres 5.1
2047 Male, age 72, unknown 4.8
2016 Female, age 72, unknown 3.8
Inferior colliculus
nTPM: 6.5
2849 Male, age 72, unknown 7.5
1848 Female, age 42, unknown 7.0
2097 Female, age 72, unknown 6.2
1890 Male, age 53, unknown 5.2
Median raphe nucleus
nTPM: 6.2
2220 Male, age 76, midline 6.2
Periaquaductal grey, anterior
nTPM: 7.4
1947 Male, age 18, unknown 7.8
1795 Male, age 51, unknown 7.5
2502 Female, age 75, unknown 6.8
Periaquaductal grey, dorsal
nTPM: 5.2
1840 Male, age 53, unknown 5.9
1831 Male, age 72, unknown 5.2
2464 Female, age 72, unknown 5.1
2850 Male, age 76, both hemispheres 4.7
Periaquaductal grey, lateral
nTPM: 4.7
2272 Male, age 74, both hemispheres 5.6
2140 Male, age 76, both hemispheres 4.4
2053 Male, age 18, unknown 4.0
Pretectal area
nTPM: 5.6
1944 Female, age 72, unknown 7.1
2007 Male, age 72, unknown 6.9
2667 Female, age 75, unknown 6.8
1816 Male, age 51, unknown 5.9
2316 Male, age 76, right hemisphere 5.8
2407 Male, age 75, both hemispheres 5.8
1815 Male, age 53, unknown 5.7
1817 Female, age 42, unknown 5.3
2273 Male, age 74, both hemispheres 4.9
2825 Male, age 18, unknown 3.8
2224 Female, age 72, unknown 3.7
Red nucleus
nTPM: 6.1
1821 Female, age 72, unknown 8.1
2785 Male, age 18, unknown 7.5
2503 Female, age 72, unknown 6.9
2584 Male, age 75, left hemisphere 6.3
1954 Female, age 42, unknown 6.2
2725 Female, age 75, unknown 6.1
2588 Male, age 74, left hemisphere 5.8
2769 Male, age 72, unknown 5.5
1904 Male, age 53, unknown 5.3
1865 Male, age 51, unknown 5.2
2823 Male, age 76, right hemisphere 5.1
2227 Male, age 72, unknown 5.0
Substantia nigra
nTPM: 7.5
2409 Female, age 72, unknown 13.5
1916 Female, age 42, unknown 9.0
1851 Male, age 51, unknown 8.6
2241 Male, age 72, unknown 8.2
1941 Male, age 53, unknown 7.8
1889 Female, age 72, unknown 6.6
2699 Male, age 18, unknown 6.3
2665 Male, age 74, both hemispheres 5.6
2583 Male, age 75, right hemisphere 4.7
2590 Female, age 75, unknown 4.5
Superior colliculus
nTPM: 6.5
2664 Male, age 75, both hemispheres 8.9
1895 Male, age 76, right hemisphere 8.7
2668 Female, age 75, unknown 8.5
2087 Female, age 72, unknown 8.3
1796 Male, age 53, unknown 6.8
2261 Male, age 18, unknown 5.6
1839 Male, age 51, unknown 5.1
1995 Male, age 72, unknown 4.6
1913 Female, age 42, unknown 4.5
2587 Male, age 74, left hemisphere 4.2
Ventral tegmental area
nTPM: 7.4
1942 Male, age 51, unknown 8.9
2410 Female, age 72, unknown 8.4
1915 Female, age 42, unknown 8.2
2021 Male, age 53, unknown 7.1
2218 Male, age 76, both hemispheres 7.1
2223 Female, age 72, unknown 5.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 38.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.5
Samples: 139

Max nTPM: 86.0
Min nTPM: 17.2
Std nTPM: 13.1
Median nTPM: 36.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 86.0
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 76.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 73.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 69.6
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 67.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 65.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 63.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 62.6
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 62.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 61.2
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 61.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 53.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.0
FF:10158-103A5 76 years, female 53.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 53.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 45.3
Samples: 4

Max nTPM: 61.2
Min nTPM: 29.3
Sample A Female 61.2
Sample B Female 29.3
Sample C Male 54.6
Sample D Male 36.1
Midbrain
nTPM: 48.9
Samples: 4

Max nTPM: 58.2
Min nTPM: 40.3
Sample A Female 43.3
Sample B Female 40.3
Sample C Male 58.2
Sample D Male 53.9
Periaqueductal gray
nTPM: 42.2
Samples: 3

Max nTPM: 46.6
Min nTPM: 39.9
Sample B Female 39.9
Sample C Male 46.6
Sample D Male 40.2
Superior colliculi
nTPM: 53.1
Samples: 4

Max nTPM: 66.7
Min nTPM: 25.5
Sample A Female 66.7
Sample B Female 25.5
Sample C Male 62.4
Sample D Male 57.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 71.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 71.8
Samples: 4

Max nTPM: 76.5
Min nTPM: 68.4
Sample A Male 68.4
Sample B Male 69.8
Sample C Female 72.5
Sample D Female 76.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.2
69202555 Antisense, RP_050324_03_H01, Mouse strain C57BL/6J (56 days, male) 6.2

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