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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DHX16 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
36.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
26.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
24.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
24.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
22.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
21.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
21.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
21.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
20.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
20.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
20.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
20.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
20.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
20.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
20.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
20.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
19.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
18.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
18.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
18.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
18.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
18.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
18.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
18.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
17.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
17.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
17.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
17.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
17.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
16.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
16.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
15.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
15.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
15.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
15.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
14.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
14.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
14.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
14.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
14.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
14.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
13.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
13.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
13.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
13.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
13.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
12.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
10.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
10.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
10.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
10.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
9.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
8.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
5.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
4.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DHX16 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.0
Number of samples
231
Samples
Sample
Description
TPM
DO48746
0 years, male, NA, stage:3, alive, 570 days
68.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
60.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
52.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
46.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
43.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
41.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
40.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
39.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
38.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
38.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
38.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
37.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
36.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
35.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
35.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
33.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
33.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
32.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
32.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
31.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
31.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
31.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
30.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
30.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
29.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
27.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
27.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
27.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
27.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
27.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
26.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
25.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
25.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
24.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
24.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
24.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
24.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
24.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
24.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
24.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
24.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
23.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
23.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
23.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
22.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
22.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
22.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
22.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
22.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
22.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
22.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
22.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
22.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
22.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
22.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
22.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
21.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
21.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
21.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
21.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
21.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
21.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
21.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
21.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
21.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
20.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
20.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
20.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
20.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
20.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
20.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
20.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
20.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
20.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
20.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
20.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
20.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
20.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
19.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
19.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
19.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
19.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
19.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
19.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
19.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
19.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
19.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
19.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
19.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
19.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
19.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
19.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
19.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
18.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
18.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
18.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
18.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
18.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
18.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
18.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
18.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
18.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
18.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
17.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
17.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
17.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
17.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
17.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
17.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
17.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
17.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
17.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
17.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
17.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
16.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
16.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
16.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
16.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
16.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
16.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
16.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
16.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
16.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
16.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
16.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
16.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
16.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
16.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
15.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
15.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
15.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
15.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
15.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
14.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
14.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
14.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
14.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
14.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
13.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
10.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
123
Tumor
0.8
957
Tumor
0.8
313
Tumor
0.8
695
Tumor
0.8
1013
Tumor
0.8
351
Tumor
0.7
425
Tumor
0.7
497
Tumor
0.7
865
Tumor
0.6
443
Tumor
0.6
647
Tumor
0.6
112
Tumor
0.6
553
Tumor
0.6
171
Tumor
0.6
533
Tumor
0.6
635
Tumor
0.6
977
Tumor
0.6
431
Tumor
0.6
937
Tumor
0.5
513
Tumor
0.5
277
Tumor
0.5
473
Tumor
0.5
463
Tumor
0.5
355
Tumor
0.5
965
Tumor
0.5
663
Tumor
0.5
951
Tumor
0.5
487
Tumor
0.5
411
Tumor
0.5
367
Tumor
0.5
1021
Tumor
0.5
127
Tumor
0.4
1027
Tumor
0.4
537
Tumor
0.4
665
Tumor
0.4
923
Tumor
0.4
883
Tumor
0.4
983
Tumor
0.4
785
Tumor
0.4
341
Tumor
0.4
815
Tumor
0.4
661
Tumor
0.4
724
Normal
0.4
493
Tumor
0.4
357
Tumor
0.4
777
Tumor
0.4
671
Tumor
0.4
467
Tumor
0.4
1031
Tumor
0.3
331
Tumor
0.3
391
Tumor
0.3
685
Tumor
0.3
465
Tumor
0.3
231
Tumor
0.3
981
Tumor
0.3
435
Tumor
0.3
161
Tumor
0.3
213
Tumor
0.3
877
Tumor
0.3
1015
Tumor
0.3
131
Tumor
0.3
271
Tumor
0.3
385
Tumor
0.3
1041
Tumor
0.3
261
Tumor
0.3
433
Tumor
0.3
743
Tumor
0.3
545
Tumor
0.3
445
Tumor
0.3
491
Tumor
0.2
285
Tumor
0.2
125
Tumor
0.2
361
Tumor
0.2
413
Tumor
0.2
817
Tumor
0.2
343
Tumor
0.2
527
Tumor
0.2
477
Tumor
0.2
423
Tumor
0.2
873
Tumor
0.2
925
Tumor
0.2
141
Tumor
0.2
221
Tumor
0.2
573
Tumor
0.2
535
Tumor
0.2
227
Tumor
0.2
517
Tumor
0.2
185
Tumor
0.2
523
Tumor
0.2
741
Tumor
0.2
921
Tumor
0.2
715
Tumor
0.2
571
Tumor
0.2
217
Tumor
0.2
283
Tumor
0.2
1025
Tumor
0.2
447
Tumor
0.1
737
Tumor
0.1
211
Tumor
0.1
567
Tumor
0.1
861
Tumor
0.1
814
Normal
0.1
383
Tumor
0.1
113
Tumor
0.1
563
Tumor
0.1
124
Normal
0.1
395
Tumor
0.1
881
Tumor
0.1
427
Tumor
0.1
332
Normal
0.1
455
Tumor
0.1
813
Tumor
0.1
444
Normal
0.1
267
Tumor
0.1
641
Tumor
0.1
126
Normal
0.1
823
Tumor
0.1
953
Tumor
0.1
375
Tumor
0.1
187
Tumor
0.1
311
Tumor
0.1
387
Tumor
0.1
483
Tumor
0.0
867
Tumor
0.0
967
Tumor
0.0
145
Tumor
0.0
421
Tumor
0.0
114
Normal
0.0
557
Tumor
0.0
186
Normal
0.0
365
Tumor
0.0
353
Tumor
0.0
755
Tumor
0.0
327
Tumor
0.0
471
Tumor
0.0
135
Tumor
0.0
913
Tumor
0.0
132
Normal
0.0
314
Normal
0.0
428
Normal
0.0
524
Normal
0.0
426
Normal
0.0
257
Tumor
0.0
298
Normal
0.0
352
Normal
0.0
111
Normal
0.0
1045
Tumor
0.0
975
Tumor
0.0
451
Tumor
0.0
666
Normal
0.0
146
Normal
0.0
697
Tumor
0.0
137
Tumor
0.0
915
Tumor
0.0
672
Normal
0.0
1046
Normal
0.0
388
Normal
0.0
727
Tumor
0.0
128
Normal
0.0
572
Normal
0.0
396
Normal
0.0
394
Normal
0.0
1028
Normal
0.0
1014
Normal
0.0
384
Normal
0.0
376
Normal
0.0
484
Normal
0.0
191
Tumor
0.0
344
Normal
-0.1
354
Normal
-0.1
432
Normal
-0.1
393
Tumor
-0.1
536
Normal
-0.1
615
Tumor
-0.1
363
Tumor
-0.1
515
Tumor
-0.1
414
Normal
-0.1
488
Normal
-0.1
297
Tumor
-0.1
984
Normal
-0.1
1026
Normal
-0.1
148
Normal
-0.1
136
Normal
-0.1
456
Normal
-0.1
328
Normal
-0.1
664
Normal
-0.1
142
Normal
-0.1
268
Normal
-0.1
464
Normal
-0.1
192
Normal
-0.1
982
Normal
-0.1
147
Tumor
-0.1
262
Normal
-0.1
368
Normal
-0.1
938
Normal
-0.1
258
Normal
-0.1
978
Normal
-0.1
461
Tumor
-0.1
188
Normal
-0.1
1042
Normal
-0.1
415
Tumor
-0.1
943
Tumor
-0.1
862
Normal
-0.1
744
Normal
-0.1
756
Normal
-0.1
278
Normal
-0.1
138
Normal
-0.1
911
Tumor
-0.1
228
Normal
-0.1
662
Normal
-0.1
851
Tumor
-0.1
172
Normal
-0.1
392
Normal
-0.1
525
Tumor
-0.1
554
Normal
-0.1
858
Normal
-0.1
648
Normal
-0.1
195
Tumor
-0.1
232
Normal
-0.1
745
Tumor
-0.1
468
Normal
-0.1
218
Normal
-0.1
568
Normal
-0.1
424
Normal
-0.1
286
Normal
-0.1
436
Normal
-0.1
412
Normal
-0.1
1022
Normal
-0.1
162
Normal
-0.1
284
Normal
-0.1
364
Normal
-0.1
446
Normal
-0.1
786
Normal
-0.1
912
Normal
-0.1
546
Normal
-0.1
498
Normal
-0.1
422
Normal
-0.1
922
Normal
-0.1
538
Normal
-0.1
721
Tumor
-0.1
534
Normal
-0.1
356
Normal
-0.1
342
Normal
-0.1
966
Normal
-0.2
482
Normal
-0.2
362
Normal
-0.2
518
Normal
-0.2
636
Normal
-0.2
1016
Normal
-0.2
686
Normal
-0.2
434
Normal
-0.2
742
Normal
-0.2
516
Normal
-0.2
526
Normal
-0.2
481
Tumor
-0.2
878
Normal
-0.2
882
Normal
-0.2
976
Normal
-0.2
212
Normal
-0.2
472
Normal
-0.2
358
Normal
-0.2
958
Normal
-0.2
627
Tumor
-0.2
1043
Tumor
-0.2
628
Normal
-0.2
366
Normal
-0.2
722
Normal
-0.2
386
Normal
-0.2
416
Normal
-0.2
474
Normal
-0.2
528
Normal
-0.2
564
Normal
-0.2
963
Tumor
-0.2
272
Normal
-0.2
964
Normal
-0.2
924
Normal
-0.2
818
Normal
-0.2
214
Normal
-0.2
746
Normal
-0.2
448
Normal
-0.2
1032
Normal
-0.2
478
Normal
-0.2
857
Tumor
-0.2
863
Tumor
-0.2
778
Normal
-0.2
462
Normal
-0.2
494
Normal
-0.2
698
Normal
-0.2
222
Normal
-0.2
955
Tumor
-0.2
312
Normal
-0.2
558
Normal
-0.2
864
Normal
-0.2
884
Normal
-0.2
824
Normal
-0.2
723
Tumor
-0.2
1044
Normal
-0.2
224
Normal
-0.2
196
Normal
-0.2
514
Normal
-0.2
926
Normal
-0.2
223
Tumor
-0.2
738
Normal
-0.2
492
Normal
-0.2
728
Normal
-0.2
874
Normal
-0.2
714
Normal
-0.2
917
Tumor
-0.3
916
Normal
-0.3
466
Normal
-0.3
968
Normal
-0.3
914
Normal
-0.3
713
Tumor
-0.3
716
Normal
-0.3
944
Normal
-0.3
574
Normal
-0.3
868
Normal
-0.3
618
Normal
-0.3
852
Normal
-0.3
954
Normal
-0.3
696
Normal
-0.3
642
Normal
-0.3
452
Normal
-0.3
866
Normal
-0.3
616
Normal
-0.3
816
Normal
-0.3
918
Normal
-0.3
956
Normal
-0.4
952
Normal
-0.5
617
Tumor
-0.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
