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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
25.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
24.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
19.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
16.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
14.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
4.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
2.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
1.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
1.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
1.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
0.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
0.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
0.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
0.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PRRC2A is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.7
Number of samples
231
Samples
Sample
Description
TPM
DO45189
0 years, female, NA, stage:2, alive, 1200 days
72.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
59.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
56.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
56.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
55.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
53.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
52.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
51.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
48.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
46.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
44.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
43.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
42.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
42.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
42.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
41.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
41.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
39.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
39.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
39.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
38.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
38.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
38.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
38.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
37.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
36.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
35.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
35.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
34.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
34.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
33.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
33.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
33.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
32.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
32.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
30.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
30.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
30.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
30.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
29.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
29.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
29.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
28.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
28.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
28.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
27.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
27.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
27.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
27.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
27.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
26.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
26.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
26.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
26.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
25.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
25.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
25.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
25.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
25.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
25.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
25.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
25.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
25.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
25.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
25.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
24.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
24.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
24.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
24.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
24.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
24.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
23.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
23.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
23.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
23.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
23.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
23.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
23.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
23.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
23.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
23.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
23.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
23.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
22.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
22.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
22.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
22.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
22.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
22.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
22.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
22.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
22.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
21.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
21.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
21.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
21.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
21.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
21.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
21.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
21.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
21.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
21.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
20.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
20.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
20.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
20.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
20.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
20.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
20.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
20.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
20.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
20.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
20.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
20.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
19.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
19.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
19.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
19.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
18.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
18.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
18.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
18.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
18.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
18.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
18.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
18.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
17.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
17.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
17.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
17.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
17.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
17.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
17.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
17.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
17.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
17.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
17.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
17.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
17.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
16.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
16.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
16.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
16.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
16.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
16.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
16.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
16.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
16.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
14.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
13.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
12.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
12.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
11.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.1
965
Tumor
1.1
957
Tumor
1.0
951
Tumor
1.0
537
Tumor
1.0
497
Tumor
0.9
425
Tumor
0.9
727
Tumor
0.9
473
Tumor
0.8
695
Tumor
0.8
1013
Tumor
0.8
131
Tumor
0.7
967
Tumor
0.7
517
Tumor
0.7
123
Tumor
0.7
977
Tumor
0.7
523
Tumor
0.7
487
Tumor
0.7
351
Tumor
0.7
663
Tumor
0.7
815
Tumor
0.6
865
Tumor
0.6
231
Tumor
0.6
477
Tumor
0.6
921
Tumor
0.6
171
Tumor
0.6
493
Tumor
0.6
923
Tumor
0.6
285
Tumor
0.6
983
Tumor
0.6
943
Tumor
0.5
553
Tumor
0.5
1041
Tumor
0.5
661
Tumor
0.5
367
Tumor
0.5
737
Tumor
0.5
567
Tumor
0.5
877
Tumor
0.5
283
Tumor
0.5
647
Tumor
0.5
1021
Tumor
0.5
685
Tumor
0.4
431
Tumor
0.4
953
Tumor
0.4
385
Tumor
0.4
391
Tumor
0.4
571
Tumor
0.4
463
Tumor
0.4
257
Tumor
0.4
665
Tumor
0.4
313
Tumor
0.4
527
Tumor
0.4
331
Tumor
0.4
483
Tumor
0.4
535
Tumor
0.4
883
Tumor
0.4
411
Tumor
0.4
937
Tumor
0.4
545
Tumor
0.3
1027
Tumor
0.3
413
Tumor
0.3
817
Tumor
0.3
715
Tumor
0.3
671
Tumor
0.3
125
Tumor
0.3
221
Tumor
0.3
533
Tumor
0.3
1025
Tumor
0.3
525
Tumor
0.3
387
Tumor
0.3
823
Tumor
0.3
343
Tumor
0.3
741
Tumor
0.3
557
Tumor
0.3
777
Tumor
0.3
363
Tumor
0.3
355
Tumor
0.3
127
Tumor
0.3
311
Tumor
0.3
445
Tumor
0.3
563
Tumor
0.3
724
Normal
0.2
515
Tumor
0.2
1015
Tumor
0.2
161
Tumor
0.2
211
Tumor
0.2
814
Normal
0.2
481
Tumor
0.2
393
Tumor
0.2
137
Tumor
0.2
1031
Tumor
0.2
447
Tumor
0.2
863
Tumor
0.2
955
Tumor
0.2
1043
Tumor
0.2
327
Tumor
0.2
573
Tumor
0.2
375
Tumor
0.2
491
Tumor
0.2
112
Tumor
0.2
915
Tumor
0.2
925
Tumor
0.2
341
Tumor
0.2
227
Tumor
0.2
443
Tumor
0.2
813
Tumor
0.2
911
Tumor
0.1
627
Tumor
0.1
455
Tumor
0.1
913
Tumor
0.1
297
Tumor
0.1
357
Tumor
0.1
554
Normal
0.1
435
Tumor
0.1
745
Tumor
0.1
365
Tumor
0.1
785
Tumor
0.1
851
Tumor
0.1
975
Tumor
0.1
261
Tumor
0.1
721
Tumor
0.1
852
Normal
0.1
141
Tumor
0.1
963
Tumor
0.1
1045
Tumor
0.1
277
Tumor
0.1
944
Normal
0.1
881
Tumor
0.1
395
Tumor
0.1
635
Tumor
0.1
982
Normal
0.1
824
Normal
0.1
147
Tumor
0.1
862
Normal
0.1
984
Normal
0.1
572
Normal
0.1
433
Tumor
0.1
873
Tumor
0.1
1028
Normal
0.1
816
Normal
0.1
861
Tumor
0.1
1016
Normal
0.1
536
Normal
0.0
714
Normal
0.0
615
Tumor
0.0
981
Tumor
0.0
284
Normal
0.0
427
Tumor
0.0
546
Normal
0.0
484
Normal
0.0
223
Tumor
0.0
978
Normal
0.0
1014
Normal
0.0
498
Normal
0.0
528
Normal
0.0
1022
Normal
0.0
641
Tumor
0.0
558
Normal
0.0
478
Normal
0.0
858
Normal
0.0
818
Normal
0.0
884
Normal
0.0
412
Normal
0.0
917
Tumor
0.0
1026
Normal
0.0
1042
Normal
0.0
866
Normal
0.0
964
Normal
0.0
938
Normal
0.0
267
Tumor
0.0
187
Tumor
0.0
328
Normal
0.0
474
Normal
0.0
461
Tumor
0.0
415
Tumor
0.0
145
Tumor
0.0
518
Normal
0.0
513
Tumor
0.0
494
Normal
0.0
271
Tumor
0.0
448
Normal
0.0
1044
Normal
0.0
534
Normal
0.0
465
Tumor
0.0
958
Normal
0.0
286
Normal
0.0
696
Normal
0.0
524
Normal
0.0
966
Normal
0.0
864
Normal
0.0
857
Tumor
0.0
976
Normal
0.0
135
Tumor
0.0
383
Tumor
0.0
467
Tumor
0.0
451
Tumor
0.0
617
Tumor
0.0
912
Normal
0.0
356
Normal
0.0
918
Normal
0.0
952
Normal
0.0
867
Tumor
0.0
421
Tumor
0.0
698
Normal
0.0
868
Normal
-0.1
224
Normal
-0.1
416
Normal
-0.1
968
Normal
-0.1
878
Normal
-0.1
786
Normal
-0.1
492
Normal
-0.1
482
Normal
-0.1
926
Normal
-0.1
742
Normal
-0.1
954
Normal
-0.1
716
Normal
-0.1
538
Normal
-0.1
444
Normal
-0.1
916
Normal
-0.1
364
Normal
-0.1
136
Normal
-0.1
564
Normal
-0.1
217
Tumor
-0.1
516
Normal
-0.1
1046
Normal
-0.1
574
Normal
-0.1
132
Normal
-0.1
728
Normal
-0.1
526
Normal
-0.1
353
Tumor
-0.1
185
Tumor
-0.1
662
Normal
-0.1
191
Tumor
-0.1
697
Tumor
-0.1
664
Normal
-0.1
472
Normal
-0.1
213
Tumor
-0.1
232
Normal
-0.1
361
Tumor
-0.1
471
Tumor
-0.1
924
Normal
-0.1
488
Normal
-0.1
922
Normal
-0.1
713
Tumor
-0.1
514
Normal
-0.1
956
Normal
-0.1
423
Tumor
-0.1
723
Tumor
-0.1
1032
Normal
-0.1
756
Normal
-0.1
228
Normal
-0.1
568
Normal
-0.1
882
Normal
-0.1
666
Normal
-0.1
686
Normal
-0.1
746
Normal
-0.1
462
Normal
-0.1
744
Normal
-0.1
778
Normal
-0.1
648
Normal
-0.1
138
Normal
-0.1
278
Normal
-0.1
142
Normal
-0.1
914
Normal
-0.1
755
Tumor
-0.1
146
Normal
-0.2
874
Normal
-0.2
312
Normal
-0.2
722
Normal
-0.2
672
Normal
-0.2
426
Normal
-0.2
212
Normal
-0.2
368
Normal
-0.2
195
Tumor
-0.2
396
Normal
-0.2
456
Normal
-0.2
738
Normal
-0.2
298
Normal
-0.2
468
Normal
-0.2
422
Normal
-0.2
628
Normal
-0.2
452
Normal
-0.2
262
Normal
-0.2
314
Normal
-0.2
436
Normal
-0.2
384
Normal
-0.2
258
Normal
-0.2
366
Normal
-0.2
352
Normal
-0.3
428
Normal
-0.3
376
Normal
-0.3
392
Normal
-0.3
268
Normal
-0.3
113
Tumor
-0.3
192
Normal
-0.3
188
Normal
-0.3
272
Normal
-0.3
214
Normal
-0.3
446
Normal
-0.3
362
Normal
-0.3
386
Normal
-0.3
222
Normal
-0.3
218
Normal
-0.3
196
Normal
-0.3
414
Normal
-0.3
148
Normal
-0.3
424
Normal
-0.3
354
Normal
-0.3
186
Normal
-0.3
434
Normal
-0.3
344
Normal
-0.3
618
Normal
-0.3
636
Normal
-0.3
464
Normal
-0.3
388
Normal
-0.3
394
Normal
-0.3
616
Normal
-0.3
172
Normal
-0.3
358
Normal
-0.3
332
Normal
-0.4
466
Normal
-0.4
642
Normal
-0.4
162
Normal
-0.4
114
Normal
-0.4
432
Normal
-0.4
342
Normal
-0.4
111
Normal
-0.4
124
Normal
-0.4
128
Normal
-0.5
126
Normal
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
