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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
5.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
5.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
5.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
3.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
3.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
2.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
2.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
2.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
1.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
0.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
0.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
0.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
C6orf47 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.5
Number of samples
231
Samples
Sample
Description
TPM
DO48746
0 years, male, NA, stage:3, alive, 570 days
34.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
30.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
30.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
26.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
25.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
22.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
22.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
21.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
20.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
20.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
20.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
19.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
19.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
18.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
18.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
18.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
18.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
17.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
17.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
16.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
16.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
16.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
15.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
15.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
15.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
14.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
14.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
14.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
14.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
14.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
12.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
11.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
11.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
10.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
8.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
5.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
5.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
5.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
4.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
4.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
4.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
4.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
4.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
3.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
1.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
553
Tumor
2.4
695
Tumor
1.7
977
Tumor
1.3
1041
Tumor
1.1
615
Tumor
0.9
635
Tumor
0.9
785
Tumor
0.9
921
Tumor
0.9
641
Tumor
0.9
171
Tumor
0.8
261
Tumor
0.8
1013
Tumor
0.8
915
Tumor
0.7
271
Tumor
0.7
911
Tumor
0.7
385
Tumor
0.7
545
Tumor
0.7
481
Tumor
0.7
493
Tumor
0.7
343
Tumor
0.7
817
Tumor
0.6
433
Tumor
0.6
877
Tumor
0.6
741
Tumor
0.6
777
Tumor
0.6
477
Tumor
0.6
123
Tumor
0.6
823
Tumor
0.6
431
Tumor
0.6
526
Normal
0.6
355
Tumor
0.6
483
Tumor
0.5
1027
Tumor
0.5
127
Tumor
0.5
671
Tumor
0.5
257
Tumor
0.5
455
Tumor
0.5
497
Tumor
0.5
922
Normal
0.4
727
Tumor
0.4
488
Normal
0.4
554
Normal
0.4
491
Tumor
0.4
484
Normal
0.4
744
Normal
0.4
723
Tumor
0.4
467
Tumor
0.4
925
Tumor
0.4
525
Tumor
0.4
715
Tumor
0.4
981
Tumor
0.4
527
Tumor
0.4
857
Tumor
0.4
217
Tumor
0.4
665
Tumor
0.3
557
Tumor
0.3
277
Tumor
0.3
227
Tumor
0.3
191
Tumor
0.3
917
Tumor
0.3
964
Normal
0.3
375
Tumor
0.3
924
Normal
0.3
648
Normal
0.3
926
Normal
0.3
686
Normal
0.3
221
Tumor
0.3
978
Normal
0.3
524
Normal
0.3
824
Normal
0.3
341
Tumor
0.3
473
Tumor
0.3
268
Normal
0.3
492
Normal
0.3
698
Normal
0.3
516
Normal
0.3
663
Tumor
0.3
426
Normal
0.3
313
Tumor
0.3
161
Tumor
0.3
861
Tumor
0.3
647
Tumor
0.3
546
Normal
0.3
912
Normal
0.3
642
Normal
0.3
881
Tumor
0.3
131
Tumor
0.3
627
Tumor
0.3
423
Tumor
0.2
1025
Tumor
0.2
364
Normal
0.2
818
Normal
0.2
862
Normal
0.2
1014
Normal
0.2
957
Tumor
0.2
878
Normal
0.2
1015
Tumor
0.2
916
Normal
0.2
528
Normal
0.2
1043
Tumor
0.2
471
Tumor
0.2
868
Normal
0.2
664
Normal
0.2
865
Tumor
0.2
218
Normal
0.2
618
Normal
0.2
721
Tumor
0.2
742
Normal
0.2
662
Normal
0.2
135
Tumor
0.2
884
Normal
0.2
283
Tumor
0.2
954
Normal
0.2
498
Normal
0.2
672
Normal
0.2
415
Tumor
0.2
414
Normal
0.2
456
Normal
0.2
923
Tumor
0.2
192
Normal
0.2
462
Normal
0.2
955
Tumor
0.2
412
Normal
0.1
513
Tumor
0.1
272
Normal
0.1
466
Normal
0.1
918
Normal
0.1
443
Tumor
0.1
982
Normal
0.1
984
Normal
0.1
195
Tumor
0.1
392
Normal
0.1
968
Normal
0.1
112
Tumor
0.1
232
Normal
0.1
451
Tumor
0.1
866
Normal
0.1
425
Tumor
0.1
468
Normal
0.1
572
Normal
0.1
342
Normal
0.1
262
Normal
0.1
816
Normal
0.1
882
Normal
0.1
864
Normal
0.1
728
Normal
0.1
267
Tumor
0.1
366
Normal
0.1
666
Normal
0.1
636
Normal
0.1
422
Normal
0.1
222
Normal
0.1
966
Normal
0.1
196
Normal
0.1
472
Normal
0.1
352
Normal
0.1
958
Normal
0.1
125
Tumor
0.1
482
Normal
0.1
786
Normal
0.1
358
Normal
0.1
913
Tumor
0.1
867
Tumor
0.1
523
Tumor
0.1
743
Tumor
0.1
534
Normal
0.1
416
Normal
0.1
344
Normal
0.1
298
Normal
0.1
228
Normal
0.1
384
Normal
0.1
494
Normal
0.1
616
Normal
0.1
963
Tumor
0.1
258
Normal
0.1
778
Normal
0.1
286
Normal
0.1
571
Tumor
0.1
447
Tumor
0.1
755
Tumor
0.1
147
Tumor
0.1
745
Tumor
0.1
328
Normal
0.0
738
Normal
0.0
478
Normal
0.0
353
Tumor
0.0
628
Normal
0.0
538
Normal
0.0
515
Tumor
0.0
568
Normal
0.0
365
Tumor
0.0
1026
Normal
0.0
1044
Normal
0.0
214
Normal
0.0
231
Tumor
0.0
434
Normal
0.0
956
Normal
0.0
356
Normal
0.0
943
Tumor
0.0
514
Normal
0.0
944
Normal
0.0
536
Normal
0.0
212
Normal
0.0
1046
Normal
0.0
1032
Normal
0.0
737
Tumor
0.0
696
Normal
0.0
376
Normal
0.0
213
Tumor
0.0
1031
Tumor
0.0
1022
Normal
0.0
362
Normal
0.0
421
Tumor
0.0
327
Tumor
0.0
714
Normal
0.0
148
Normal
0.0
533
Tumor
0.0
452
Normal
0.0
938
Normal
0.0
386
Normal
0.0
852
Normal
0.0
351
Tumor
-0.1
428
Normal
-0.1
464
Normal
-0.1
724
Normal
-0.1
224
Normal
-0.1
444
Normal
-0.1
716
Normal
-0.1
1028
Normal
-0.1
858
Normal
-0.1
465
Tumor
-0.1
685
Tumor
-0.1
172
Normal
-0.1
448
Normal
-0.1
357
Tumor
-0.1
284
Normal
-0.1
388
Normal
-0.1
142
Normal
-0.1
952
Normal
-0.1
137
Tumor
-0.1
558
Normal
-0.1
162
Normal
-0.1
188
Normal
-0.1
427
Tumor
-0.1
435
Tumor
-0.1
863
Tumor
-0.1
314
Normal
-0.1
361
Tumor
-0.1
883
Tumor
-0.1
332
Normal
-0.1
128
Normal
-0.1
132
Normal
-0.1
461
Tumor
-0.2
756
Normal
-0.2
126
Normal
-0.2
937
Tumor
-0.2
951
Tumor
-0.2
474
Normal
-0.2
124
Normal
-0.2
722
Normal
-0.2
574
Normal
-0.2
873
Tumor
-0.2
424
Normal
-0.2
487
Tumor
-0.2
211
Tumor
-0.2
1016
Normal
-0.2
1042
Normal
-0.2
114
Normal
-0.2
354
Normal
-0.2
411
Tumor
-0.2
395
Tumor
-0.2
661
Tumor
-0.2
331
Tumor
-0.2
914
Normal
-0.2
278
Normal
-0.2
463
Tumor
-0.2
564
Normal
-0.2
713
Tumor
-0.2
617
Tumor
-0.2
136
Normal
-0.2
368
Normal
-0.2
146
Normal
-0.2
436
Normal
-0.2
445
Tumor
-0.3
814
Normal
-0.3
1021
Tumor
-0.3
535
Tumor
-0.3
746
Normal
-0.3
432
Normal
-0.3
396
Normal
-0.3
446
Normal
-0.3
311
Tumor
-0.3
394
Normal
-0.3
138
Normal
-0.3
186
Normal
-0.3
983
Tumor
-0.3
953
Tumor
-0.3
874
Normal
-0.3
111
Normal
-0.3
967
Tumor
-0.3
383
Tumor
-0.3
312
Normal
-0.3
1045
Tumor
-0.3
223
Tumor
-0.4
185
Tumor
-0.4
697
Tumor
-0.4
813
Tumor
-0.4
145
Tumor
-0.4
393
Tumor
-0.4
518
Normal
-0.4
297
Tumor
-0.5
285
Tumor
-0.5
113
Tumor
-0.5
537
Tumor
-0.5
187
Tumor
-0.6
141
Tumor
-0.6
413
Tumor
-0.8
563
Tumor
-0.8
573
Tumor
-0.8
976
Normal
-0.8
517
Tumor
-0.8
975
Tumor
-0.9
363
Tumor
-0.9
567
Tumor
-0.9
367
Tumor
-1.1
851
Tumor
-1.1
965
Tumor
-1.1
815
Tumor
-1.1
391
Tumor
-1.3
387
Tumor
-1.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.