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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CSNK2B is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
65.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
321.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
319.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
311.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
302.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
283.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
274.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
273.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
269.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
263.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
255.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
249.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
246.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
242.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
235.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
232.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
232.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
221.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
211.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
211.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
209.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
204.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
203.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
198.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
196.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
195.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
193.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
193.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
186.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
184.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
183.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
182.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
182.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
182.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
181.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
180.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
180.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
177.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
177.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
173.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
172.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
168.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
164.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
158.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
155.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
155.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
153.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
150.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
150.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
149.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
149.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
148.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
145.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
144.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
143.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
142.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
141.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
141.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
140.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
140.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
139.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
139.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
139.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
138.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
137.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
137.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
137.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
137.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
136.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
136.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
135.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
135.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
135.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
131.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
130.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
128.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
126.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
126.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
122.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
122.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
122.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
120.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
120.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
118.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
118.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
118.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
117.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
114.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
113.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
112.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
111.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
111.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
110.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
107.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
107.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
107.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
107.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
106.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
104.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
102.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
102.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
100.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
100.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
98.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
98.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
97.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
97.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
97.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
97.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
97.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
96.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
96.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
94.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
93.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
93.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
92.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
90.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
90.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
89.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
89.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
89.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
89.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
88.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
87.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
87.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
85.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
85.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
85.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
84.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
84.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
83.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
82.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
82.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
82.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
82.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
82.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
81.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
81.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
79.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
77.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
77.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
77.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
76.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
75.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
75.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
75.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
75.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
74.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
73.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
71.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
71.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
71.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
70.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
70.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
68.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
68.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
68.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
67.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
67.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
66.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
66.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
65.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
61.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
61.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
59.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
59.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
58.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
58.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
57.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
56.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
55.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
55.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
53.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
52.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
52.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
50.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
49.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
49.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
47.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
47.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
43.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
40.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
39.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
33.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
30.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
30.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
27.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
25.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
24.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
24.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
24.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
23.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
22.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
21.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
21.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
21.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
21.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
20.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
19.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
18.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
15.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
14.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
14.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
13.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
13.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
13.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
11.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
5.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
5.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
2.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
1.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CSNK2B is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
124.2
Number of samples
231
Samples
Sample
Description
TPM
DO45185
0 years, male, NA, stage:2, alive, 600 days
418.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
374.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
323.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
314.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
314.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
301.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
301.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
275.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
272.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
264.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
249.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
249.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
248.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
245.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
239.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
231.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
226.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
224.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
219.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
215.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
214.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
214.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
206.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
199.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
197.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
194.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
190.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
188.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
185.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
185.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
184.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
181.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
180.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
180.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
177.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
177.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
173.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
172.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
171.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
170.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
170.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
167.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
166.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
165.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
164.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
163.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
161.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
156.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
156.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
155.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
155.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
153.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
153.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
152.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
152.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
152.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
151.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
150.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
150.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
149.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
149.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
148.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
144.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
141.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
141.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
140.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
140.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
139.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
138.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
134.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
134.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
134.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
133.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
132.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
131.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
131.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
130.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
129.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
128.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
127.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
127.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
126.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
126.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
126.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
125.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
125.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
125.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
125.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
124.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
123.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
123.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
122.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
122.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
122.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
119.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
117.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
115.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
115.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
114.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
113.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
113.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
113.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
112.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
112.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
112.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
112.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
112.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
112.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
112.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
111.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
111.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
106.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
106.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
106.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
105.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
104.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
104.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
103.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
103.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
103.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
102.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
101.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
101.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
99.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
99.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
99.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
99.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
98.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
98.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
98.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
97.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
97.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
96.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
96.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
96.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
96.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
95.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
95.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
95.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
94.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
94.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
94.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
93.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
93.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
92.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
92.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
92.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
91.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
91.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
91.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
91.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
91.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
90.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
90.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
90.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
90.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
90.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
90.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
89.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
89.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
89.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
89.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
89.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
88.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
88.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
87.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
87.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
87.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
86.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
85.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
85.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
85.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
84.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
84.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
83.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
82.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
82.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
82.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
81.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
81.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
79.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
78.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
78.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
77.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
77.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
77.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
76.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
76.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
76.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
76.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
75.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
75.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
74.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
73.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
73.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
72.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
72.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
71.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
70.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
70.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
69.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
69.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
68.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
67.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
67.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
67.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
66.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
66.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
66.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
66.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
65.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
65.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
65.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
63.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
63.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
63.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
63.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
63.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
62.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
62.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
61.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
61.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
58.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
57.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
57.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
56.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
55.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
54.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
53.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
51.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
43.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
351
Tumor
1.0
1021
Tumor
0.7
743
Tumor
0.7
537
Tumor
0.7
661
Tumor
0.6
131
Tumor
0.6
741
Tumor
0.6
777
Tumor
0.6
977
Tumor
0.6
685
Tumor
0.6
285
Tumor
0.6
123
Tumor
0.5
671
Tumor
0.5
1015
Tumor
0.5
445
Tumor
0.5
983
Tumor
0.5
967
Tumor
0.5
367
Tumor
0.5
147
Tumor
0.4
921
Tumor
0.4
385
Tumor
0.4
635
Tumor
0.4
785
Tumor
0.4
271
Tumor
0.4
1027
Tumor
0.4
283
Tumor
0.4
171
Tumor
0.4
755
Tumor
0.4
455
Tumor
0.4
1041
Tumor
0.4
981
Tumor
0.4
411
Tumor
0.3
951
Tumor
0.3
647
Tumor
0.3
877
Tumor
0.3
617
Tumor
0.3
387
Tumor
0.3
737
Tumor
0.3
861
Tumor
0.3
391
Tumor
0.3
745
Tumor
0.3
267
Tumor
0.3
965
Tumor
0.3
553
Tumor
0.3
527
Tumor
0.3
497
Tumor
0.3
261
Tumor
0.3
471
Tumor
0.3
535
Tumor
0.3
331
Tumor
0.3
525
Tumor
0.3
715
Tumor
0.3
493
Tumor
0.3
473
Tumor
0.3
533
Tumor
0.2
573
Tumor
0.2
487
Tumor
0.2
911
Tumor
0.2
567
Tumor
0.2
724
Normal
0.2
463
Tumor
0.2
483
Tumor
0.2
1045
Tumor
0.2
515
Tumor
0.2
695
Tumor
0.2
627
Tumor
0.2
813
Tumor
0.2
863
Tumor
0.2
697
Tumor
0.2
425
Tumor
0.2
465
Tumor
0.2
523
Tumor
0.2
663
Tumor
0.2
1031
Tumor
0.2
925
Tumor
0.2
873
Tumor
0.2
135
Tumor
0.2
477
Tumor
0.2
975
Tumor
0.2
817
Tumor
0.2
395
Tumor
0.2
277
Tumor
0.2
227
Tumor
0.2
357
Tumor
0.2
393
Tumor
0.2
881
Tumor
0.2
727
Tumor
0.2
125
Tumor
0.2
375
Tumor
0.2
641
Tumor
0.1
1013
Tumor
0.1
636
Normal
0.1
815
Tumor
0.1
231
Tumor
0.1
127
Tumor
0.1
297
Tumor
0.1
363
Tumor
0.1
917
Tumor
0.1
513
Tumor
0.1
141
Tumor
0.1
517
Tumor
0.1
557
Tumor
0.1
257
Tumor
0.1
937
Tumor
0.1
867
Tumor
0.1
665
Tumor
0.1
461
Tumor
0.1
447
Tumor
0.1
113
Tumor
0.1
433
Tumor
0.1
618
Normal
0.1
435
Tumor
0.1
221
Tumor
0.1
883
Tumor
0.1
431
Tumor
0.1
313
Tumor
0.1
564
Normal
0.1
343
Tumor
0.1
1043
Tumor
0.1
1046
Normal
0.0
955
Tumor
0.0
545
Tumor
0.0
491
Tumor
0.0
963
Tumor
0.0
355
Tumor
0.0
884
Normal
0.0
615
Tumor
0.0
1028
Normal
0.0
628
Normal
0.0
432
Normal
0.0
217
Tumor
0.0
814
Normal
0.0
616
Normal
0.0
353
Tumor
0.0
571
Tumor
0.0
413
Tumor
0.0
436
Normal
0.0
851
Tumor
0.0
451
Tumor
0.0
823
Tumor
0.0
915
Tumor
0.0
211
Tumor
0.0
957
Tumor
0.0
865
Tumor
0.0
756
Normal
0.0
1016
Normal
0.0
913
Tumor
0.0
866
Normal
0.0
361
Tumor
0.0
746
Normal
0.0
112
Tumor
0.0
327
Tumor
0.0
952
Normal
0.0
185
Tumor
0.0
568
Normal
0.0
161
Tumor
0.0
878
Normal
0.0
953
Tumor
0.0
982
Normal
0.0
468
Normal
0.0
662
Normal
-0.1
213
Tumor
-0.1
778
Normal
-0.1
943
Tumor
-0.1
446
Normal
-0.1
882
Normal
-0.1
574
Normal
-0.1
786
Normal
-0.1
923
Tumor
-0.1
642
Normal
-0.1
1044
Normal
-0.1
554
Normal
-0.1
456
Normal
-0.1
448
Normal
-0.1
728
Normal
-0.1
128
Normal
-0.1
434
Normal
-0.1
262
Normal
-0.1
232
Normal
-0.1
137
Tumor
-0.1
352
Normal
-0.1
138
Normal
-0.1
924
Normal
-0.1
466
Normal
-0.1
713
Tumor
-0.1
427
Tumor
-0.1
1014
Normal
-0.1
563
Tumor
-0.1
341
Tumor
-0.1
538
Normal
-0.1
358
Normal
-0.1
392
Normal
-0.1
984
Normal
-0.1
415
Tumor
-0.1
518
Normal
-0.1
223
Tumor
-0.1
396
Normal
-0.1
148
Normal
-0.1
738
Normal
-0.1
862
Normal
-0.1
874
Normal
-0.1
444
Normal
-0.1
572
Normal
-0.1
664
Normal
-0.1
196
Normal
-0.1
526
Normal
-0.1
1026
Normal
-0.1
452
Normal
-0.1
467
Tumor
-0.1
311
Tumor
-0.1
312
Normal
-0.1
268
Normal
-0.1
272
Normal
-0.1
191
Tumor
-0.1
721
Tumor
-0.1
344
Normal
-0.1
195
Tumor
-0.1
443
Tumor
-0.1
386
Normal
-0.1
224
Normal
-0.1
1022
Normal
-0.1
146
Normal
-0.1
423
Tumor
-0.1
124
Normal
-0.1
258
Normal
-0.1
648
Normal
-0.1
1025
Tumor
-0.1
376
Normal
-0.2
698
Normal
-0.2
142
Normal
-0.2
132
Normal
-0.2
212
Normal
-0.2
365
Tumor
-0.2
464
Normal
-0.2
744
Normal
-0.2
912
Normal
-0.2
145
Tumor
-0.2
111
Normal
-0.2
228
Normal
-0.2
383
Tumor
-0.2
286
Normal
-0.2
394
Normal
-0.2
284
Normal
-0.2
492
Normal
-0.2
186
Normal
-0.2
342
Normal
-0.2
558
Normal
-0.2
298
Normal
-0.2
187
Tumor
-0.2
918
Normal
-0.2
192
Normal
-0.2
857
Tumor
-0.2
818
Normal
-0.2
816
Normal
-0.2
546
Normal
-0.2
978
Normal
-0.2
864
Normal
-0.2
462
Normal
-0.2
966
Normal
-0.2
218
Normal
-0.2
136
Normal
-0.2
278
Normal
-0.2
114
Normal
-0.2
222
Normal
-0.2
162
Normal
-0.2
332
Normal
-0.2
426
Normal
-0.2
172
Normal
-0.2
534
Normal
-0.2
914
Normal
-0.2
388
Normal
-0.2
916
Normal
-0.2
328
Normal
-0.2
494
Normal
-0.2
964
Normal
-0.2
126
Normal
-0.2
354
Normal
-0.2
214
Normal
-0.2
188
Normal
-0.2
362
Normal
-0.2
926
Normal
-0.2
528
Normal
-0.2
536
Normal
-0.2
868
Normal
-0.2
474
Normal
-0.2
742
Normal
-0.2
364
Normal
-0.2
956
Normal
-0.2
516
Normal
-0.3
514
Normal
-0.3
922
Normal
-0.3
666
Normal
-0.3
416
Normal
-0.3
484
Normal
-0.3
356
Normal
-0.3
716
Normal
-0.3
412
Normal
-0.3
824
Normal
-0.3
696
Normal
-0.3
858
Normal
-0.3
723
Tumor
-0.3
686
Normal
-0.3
852
Normal
-0.3
366
Normal
-0.3
314
Normal
-0.3
1032
Normal
-0.3
498
Normal
-0.3
976
Normal
-0.3
481
Tumor
-0.3
1042
Normal
-0.3
722
Normal
-0.3
968
Normal
-0.3
672
Normal
-0.3
938
Normal
-0.3
944
Normal
-0.3
488
Normal
-0.3
421
Tumor
-0.3
414
Normal
-0.3
954
Normal
-0.3
422
Normal
-0.3
524
Normal
-0.3
368
Normal
-0.4
384
Normal
-0.4
424
Normal
-0.4
714
Normal
-0.4
428
Normal
-0.4
482
Normal
-0.5
472
Normal
-0.5
958
Normal
-0.5
478
Normal
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
