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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
0.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
0.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
0.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
0.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.7
Number of samples
231
Samples
Sample
Description
TPM
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
2.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
2.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
2.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
2.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
2.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
1.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
1.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
1.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
1.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
1.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
1.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
1.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
1.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
1.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
1.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
1.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
1.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
1.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
1.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
1.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
1.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
1.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
1.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
1.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
1.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
1.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
1.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
1.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
1.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
1.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
1.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
1.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
0.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
0.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
0.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
0.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
0.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
0.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
0.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
0.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
0.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
0.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
0.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
0.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
0.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
0.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
0.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
0.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
0.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
0.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
0.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
0.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
0.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
695
Tumor
1.3
231
Tumor
1.2
112
Tumor
1.0
571
Tumor
0.8
715
Tumor
0.8
127
Tumor
0.8
873
Tumor
0.7
553
Tumor
0.6
487
Tumor
0.6
161
Tumor
0.6
1041
Tumor
0.6
567
Tumor
0.6
433
Tumor
0.6
123
Tumor
0.5
883
Tumor
0.5
471
Tumor
0.5
663
Tumor
0.5
977
Tumor
0.5
911
Tumor
0.5
965
Tumor
0.5
443
Tumor
0.5
435
Tumor
0.4
493
Tumor
0.4
963
Tumor
0.4
445
Tumor
0.4
823
Tumor
0.4
641
Tumor
0.3
925
Tumor
0.3
557
Tumor
0.3
267
Tumor
0.3
423
Tumor
0.3
937
Tumor
0.3
685
Tumor
0.3
533
Tumor
0.2
477
Tumor
0.2
483
Tumor
0.2
395
Tumor
0.2
913
Tumor
0.2
813
Tumor
0.2
497
Tumor
0.2
635
Tumor
0.2
171
Tumor
0.1
867
Tumor
0.1
415
Tumor
0.1
191
Tumor
0.1
465
Tumor
0.1
665
Tumor
0.1
537
Tumor
0.1
951
Tumor
0.1
957
Tumor
0.1
217
Tumor
0.1
355
Tumor
0.1
525
Tumor
0.1
361
Tumor
0.1
917
Tumor
0.1
427
Tumor
0.1
185
Tumor
0.1
261
Tumor
0.1
617
Tumor
0.0
923
Tumor
0.0
223
Tumor
0.0
877
Tumor
0.0
367
Tumor
0.0
375
Tumor
0.0
953
Tumor
0.0
385
Tumor
0.0
491
Tumor
0.0
915
Tumor
0.0
1044
Normal
0.0
351
Tumor
0.0
1013
Tumor
0.0
983
Tumor
0.0
297
Tumor
0.0
332
Normal
0.0
488
Normal
0.0
341
Tumor
0.0
311
Tumor
0.0
1031
Tumor
0.0
227
Tumor
0.0
451
Tumor
0.0
517
Tumor
0.0
743
Tumor
0.0
145
Tumor
0.0
444
Normal
0.0
538
Normal
0.0
741
Tumor
-0.1
473
Tumor
-0.1
982
Normal
-0.1
954
Normal
-0.1
926
Normal
-0.1
135
Tumor
-0.1
478
Normal
-0.1
697
Tumor
-0.1
482
Normal
-0.1
224
Normal
-0.1
425
Tumor
-0.1
331
Tumor
-0.1
113
Tumor
-0.1
431
Tumor
-0.1
573
Tumor
-0.1
344
Normal
-0.1
383
Tumor
-0.1
924
Normal
-0.1
484
Normal
-0.1
211
Tumor
-0.1
1015
Tumor
-0.1
498
Normal
-0.1
1026
Normal
-0.1
698
Normal
-0.1
546
Normal
-0.1
384
Normal
-0.1
981
Tumor
-0.1
944
Normal
-0.1
744
Normal
-0.1
534
Normal
-0.1
1014
Normal
-0.1
313
Tumor
-0.1
968
Normal
-0.1
976
Normal
-0.1
727
Tumor
-0.1
421
Tumor
-0.1
228
Normal
-0.1
364
Normal
-0.1
554
Normal
-0.1
298
Normal
-0.1
391
Tumor
-0.1
314
Normal
-0.1
524
Normal
-0.1
865
Tumor
-0.1
722
Normal
-0.2
938
Normal
-0.2
984
Normal
-0.2
882
Normal
-0.2
964
Normal
-0.2
536
Normal
-0.2
192
Normal
-0.2
472
Normal
-0.2
218
Normal
-0.2
446
Normal
-0.2
271
Tumor
-0.2
1043
Tumor
-0.2
528
Normal
-0.2
918
Normal
-0.2
212
Normal
-0.2
481
Tumor
-0.2
526
Normal
-0.2
922
Normal
-0.2
343
Tumor
-0.2
978
Normal
-0.2
921
Tumor
-0.2
396
Normal
-0.2
513
Tumor
-0.2
172
Normal
-0.2
286
Normal
-0.2
881
Tumor
-0.2
572
Normal
-0.2
1022
Normal
-0.2
394
Normal
-0.2
818
Normal
-0.2
353
Tumor
-0.2
696
Normal
-0.2
232
Normal
-0.2
342
Normal
-0.2
411
Tumor
-0.2
1032
Normal
-0.2
955
Tumor
-0.2
686
Normal
-0.2
958
Normal
-0.2
527
Tumor
-0.2
671
Tumor
-0.2
352
Normal
-0.2
545
Tumor
-0.2
916
Normal
-0.2
558
Normal
-0.2
474
Normal
-0.2
278
Normal
-0.2
376
Normal
-0.2
428
Normal
-0.2
221
Tumor
-0.2
824
Normal
-0.2
778
Normal
-0.2
312
Normal
-0.2
268
Normal
-0.2
636
Normal
-0.2
128
Normal
-0.2
464
Normal
-0.2
975
Tumor
-0.2
568
Normal
-0.2
284
Normal
-0.2
642
Normal
-0.2
196
Normal
-0.2
746
Normal
-0.2
912
Normal
-0.2
851
Tumor
-0.2
615
Tumor
-0.2
966
Normal
-0.2
563
Tumor
-0.2
448
Normal
-0.2
816
Normal
-0.2
884
Normal
-0.2
786
Normal
-0.2
745
Tumor
-0.2
866
Normal
-0.2
714
Normal
-0.2
494
Normal
-0.2
356
Normal
-0.2
125
Tumor
-0.2
814
Normal
-0.2
195
Tumor
-0.2
1046
Normal
-0.2
328
Normal
-0.2
742
Normal
-0.2
857
Tumor
-0.3
1045
Tumor
-0.3
716
Normal
-0.3
213
Tumor
-0.3
723
Tumor
-0.3
388
Normal
-0.3
647
Tumor
-0.3
1016
Normal
-0.3
222
Normal
-0.3
1042
Normal
-0.3
368
Normal
-0.3
756
Normal
-0.3
258
Normal
-0.3
424
Normal
-0.3
956
Normal
-0.3
728
Normal
-0.3
257
Tumor
-0.3
1025
Tumor
-0.3
358
Normal
-0.3
574
Normal
-0.3
142
Normal
-0.3
616
Normal
-0.3
878
Normal
-0.3
162
Normal
-0.3
666
Normal
-0.3
186
Normal
-0.3
467
Tumor
-0.3
148
Normal
-0.3
523
Tumor
-0.3
262
Normal
-0.3
386
Normal
-0.3
514
Normal
-0.3
416
Normal
-0.3
1028
Normal
-0.3
618
Normal
-0.3
452
Normal
-0.3
422
Normal
-0.3
138
Normal
-0.3
1021
Tumor
-0.3
858
Normal
-0.3
412
Normal
-0.3
738
Normal
-0.3
874
Normal
-0.3
564
Normal
-0.3
462
Normal
-0.3
414
Normal
-0.3
518
Normal
-0.3
272
Normal
-0.3
755
Tumor
-0.3
124
Normal
-0.3
535
Tumor
-0.3
392
Normal
-0.3
436
Normal
-0.3
967
Tumor
-0.3
214
Normal
-0.3
366
Normal
-0.3
852
Normal
-0.3
426
Normal
-0.3
432
Normal
-0.3
516
Normal
-0.3
277
Tumor
-0.3
354
Normal
-0.3
868
Normal
-0.3
187
Tumor
-0.3
648
Normal
-0.3
466
Normal
-0.3
283
Tumor
-0.3
864
Normal
-0.3
672
Normal
-0.3
393
Tumor
-0.3
492
Normal
-0.3
456
Normal
-0.3
662
Normal
-0.3
861
Tumor
-0.3
468
Normal
-0.4
114
Normal
-0.4
664
Normal
-0.4
628
Normal
-0.4
126
Normal
-0.4
721
Tumor
-0.4
434
Normal
-0.4
815
Tumor
-0.4
362
Normal
-0.4
463
Tumor
-0.4
952
Normal
-0.4
357
Tumor
-0.4
137
Tumor
-0.4
111
Normal
-0.4
713
Tumor
-0.4
862
Normal
-0.4
146
Normal
-0.4
132
Normal
-0.4
447
Tumor
-0.4
914
Normal
-0.4
136
Normal
-0.4
817
Tumor
-0.4
461
Tumor
-0.4
188
Normal
-0.4
661
Tumor
-0.5
455
Tumor
-0.5
1027
Tumor
-0.5
413
Tumor
-0.5
724
Normal
-0.5
327
Tumor
-0.5
365
Tumor
-0.5
387
Tumor
-0.5
785
Tumor
-0.5
737
Tumor
-0.5
627
Tumor
-0.5
363
Tumor
-0.6
141
Tumor
-0.6
131
Tumor
-0.6
863
Tumor
-0.6
147
Tumor
-0.6
285
Tumor
-0.6
515
Tumor
-0.7
777
Tumor
-0.7
943
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.