We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NELFE is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
40.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
175.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
170.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
159.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
134.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
123.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
119.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
105.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
103.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
102.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
100.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
97.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
97.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
94.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
91.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
90.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
89.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
87.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
85.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
84.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
83.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
83.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
82.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
82.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
81.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
80.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
79.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
78.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
76.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
75.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
74.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
73.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
73.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
73.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
73.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
72.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
72.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
71.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
69.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
68.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
67.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
66.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
66.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
66.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
66.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
65.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
65.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
65.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
65.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
64.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
64.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
63.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
63.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
62.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
62.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
61.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
61.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
61.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
61.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
60.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
60.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
60.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
59.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
59.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
58.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
58.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
58.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
58.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
58.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
58.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
58.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
57.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
57.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
57.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
57.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
57.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
57.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
56.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
56.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
56.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
56.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
56.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
56.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
54.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
54.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
54.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
53.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
53.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
53.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
53.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
53.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
53.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
52.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
52.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
52.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
52.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
52.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
52.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
51.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
51.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
51.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
51.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
51.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
50.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
50.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
50.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
50.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
49.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
49.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
48.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
48.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
48.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
48.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
48.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
47.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
47.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
47.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
47.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
47.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
47.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
46.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
45.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
45.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
45.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
45.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
45.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
45.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
45.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
44.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
44.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
44.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
44.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
44.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
43.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
43.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
43.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
43.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
43.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
43.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
42.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
42.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
42.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
42.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
42.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
41.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
41.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
41.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
41.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
40.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
40.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
40.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
40.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
40.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
39.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
39.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
39.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
39.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
39.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
39.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
38.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
37.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
37.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
37.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
37.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
37.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
37.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
36.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
36.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
36.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
36.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
36.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
36.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
36.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
36.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
35.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
35.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
35.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
35.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
35.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
35.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
35.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
35.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
35.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
35.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
34.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
34.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
34.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
34.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
34.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
34.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
34.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
34.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
34.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
34.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
33.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
33.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
33.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
33.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
32.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
32.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
32.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
32.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
32.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
32.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
32.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
32.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
32.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
31.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
31.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
31.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
31.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
30.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
30.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
30.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
30.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
30.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
30.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
30.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
29.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
29.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
29.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
29.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
29.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
29.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
29.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
28.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
28.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
28.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
28.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
28.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
28.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
28.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
27.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
27.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
27.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
27.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
27.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
27.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
27.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
27.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
27.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
27.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
26.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
26.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
26.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
26.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
26.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
26.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
26.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
26.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
26.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
25.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
25.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
25.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
25.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
25.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
25.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
25.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
25.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
25.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
24.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
24.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
23.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
23.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
23.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
23.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
23.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
23.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
23.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
23.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
23.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
22.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
22.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
22.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
22.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
22.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
22.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
22.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
21.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
21.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
21.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
21.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
21.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
21.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
20.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
20.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
20.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
20.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
20.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
20.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
20.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
20.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
20.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
20.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
20.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
20.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
19.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
19.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
19.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
18.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
18.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
18.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
18.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
17.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
17.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
17.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
17.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
17.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
17.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
17.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
16.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
16.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
16.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
16.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
15.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
15.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
15.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
14.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
13.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
11.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
11.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.4
977
Tumor
1.2
695
Tumor
1.2
951
Tumor
1.1
425
Tumor
1.0
965
Tumor
1.0
131
Tumor
1.0
635
Tumor
0.9
351
Tumor
0.9
497
Tumor
0.9
473
Tumor
0.9
983
Tumor
0.9
517
Tumor
0.8
221
Tumor
0.8
967
Tumor
0.8
271
Tumor
0.8
553
Tumor
0.8
123
Tumor
0.8
411
Tumor
0.8
385
Tumor
0.8
1013
Tumor
0.8
877
Tumor
0.8
865
Tumor
0.7
737
Tumor
0.7
921
Tumor
0.7
1031
Tumor
0.7
937
Tumor
0.7
463
Tumor
0.7
671
Tumor
0.7
817
Tumor
0.7
665
Tumor
0.7
815
Tumor
0.6
431
Tumor
0.6
413
Tumor
0.6
355
Tumor
0.6
171
Tumor
0.6
112
Tumor
0.6
661
Tumor
0.6
1025
Tumor
0.6
975
Tumor
0.6
161
Tumor
0.5
567
Tumor
0.5
647
Tumor
0.5
663
Tumor
0.5
943
Tumor
0.5
487
Tumor
0.5
641
Tumor
0.5
715
Tumor
0.5
923
Tumor
0.5
367
Tumor
0.5
477
Tumor
0.5
341
Tumor
0.5
957
Tumor
0.5
331
Tumor
0.5
881
Tumor
0.5
127
Tumor
0.4
493
Tumor
0.4
1021
Tumor
0.4
433
Tumor
0.4
313
Tumor
0.4
285
Tumor
0.4
533
Tumor
0.4
814
Normal
0.4
537
Tumor
0.4
465
Tumor
0.4
741
Tumor
0.4
1015
Tumor
0.4
685
Tumor
0.4
435
Tumor
0.3
545
Tumor
0.3
535
Tumor
0.3
343
Tumor
0.3
1041
Tumor
0.3
963
Tumor
0.3
375
Tumor
0.3
231
Tumor
0.3
911
Tumor
0.3
523
Tumor
0.3
615
Tumor
0.3
727
Tumor
0.3
571
Tumor
0.3
724
Normal
0.3
447
Tumor
0.3
563
Tumor
0.3
357
Tumor
0.3
913
Tumor
0.3
867
Tumor
0.3
391
Tumor
0.3
445
Tumor
0.3
267
Tumor
0.2
455
Tumor
0.2
823
Tumor
0.2
813
Tumor
0.2
1045
Tumor
0.2
785
Tumor
0.2
443
Tumor
0.2
363
Tumor
0.2
283
Tumor
0.2
383
Tumor
0.2
361
Tumor
0.2
471
Tumor
0.2
483
Tumor
0.2
883
Tumor
0.2
573
Tumor
0.2
953
Tumor
0.2
297
Tumor
0.2
427
Tumor
0.2
277
Tumor
0.2
755
Tumor
0.2
141
Tumor
0.2
387
Tumor
0.1
697
Tumor
0.1
211
Tumor
0.1
217
Tumor
0.1
863
Tumor
0.1
261
Tumor
0.1
925
Tumor
0.1
135
Tumor
0.0
513
Tumor
0.0
395
Tumor
0.0
227
Tumor
0.0
515
Tumor
0.0
525
Tumor
0.0
467
Tumor
0.0
873
Tumor
0.0
365
Tumor
0.0
857
Tumor
0.0
958
Normal
0.0
125
Tumor
0.0
777
Tumor
0.0
944
Normal
0.0
498
Normal
0.0
954
Normal
0.0
213
Tumor
0.0
818
Normal
0.0
744
Normal
0.0
461
Tumor
0.0
354
Normal
0.0
481
Tumor
-0.1
415
Tumor
-0.1
627
Tumor
-0.1
858
Normal
-0.1
344
Normal
-0.1
721
Tumor
-0.1
964
Normal
-0.1
861
Tumor
-0.1
423
Tumor
-0.1
428
Normal
-0.1
984
Normal
-0.1
311
Tumor
-0.1
915
Tumor
-0.1
421
Tumor
-0.1
922
Normal
-0.1
484
Normal
-0.1
353
Tumor
-0.1
384
Normal
-0.1
145
Tumor
-0.1
488
Normal
-0.1
938
Normal
-0.2
1014
Normal
-0.2
557
Tumor
-0.2
358
Normal
-0.2
516
Normal
-0.2
147
Tumor
-0.2
364
Normal
-0.2
352
Normal
-0.2
491
Tumor
-0.2
524
Normal
-0.2
851
Tumor
-0.2
451
Tumor
-0.2
187
Tumor
-0.2
976
Normal
-0.2
742
Normal
-0.2
342
Normal
-0.2
968
Normal
-0.2
716
Normal
-0.2
536
Normal
-0.2
284
Normal
-0.2
955
Tumor
-0.2
142
Normal
-0.2
257
Tumor
-0.2
185
Tumor
-0.2
444
Normal
-0.2
424
Normal
-0.2
1022
Normal
-0.2
298
Normal
-0.2
393
Tumor
-0.2
918
Normal
-0.2
492
Normal
-0.2
714
Normal
-0.2
148
Normal
-0.2
824
Normal
-0.2
728
Normal
-0.2
966
Normal
-0.2
924
Normal
-0.2
132
Normal
-0.2
268
Normal
-0.2
478
Normal
-0.2
534
Normal
-0.2
538
Normal
-0.3
628
Normal
-0.3
952
Normal
-0.3
686
Normal
-0.3
366
Normal
-0.3
1016
Normal
-0.3
1028
Normal
-0.3
1032
Normal
-0.3
546
Normal
-0.3
978
Normal
-0.3
188
Normal
-0.3
416
Normal
-0.3
884
Normal
-0.3
192
Normal
-0.3
494
Normal
-0.3
232
Normal
-0.3
852
Normal
-0.3
272
Normal
-0.3
224
Normal
-0.3
191
Tumor
-0.3
636
Normal
-0.3
914
Normal
-0.3
696
Normal
-0.3
362
Normal
-0.3
464
Normal
-0.3
616
Normal
-0.3
666
Normal
-0.3
186
Normal
-0.3
136
Normal
-0.3
786
Normal
-0.3
672
Normal
-0.3
698
Normal
-0.3
466
Normal
-0.3
414
Normal
-0.3
262
Normal
-0.3
874
Normal
-0.3
426
Normal
-0.3
882
Normal
-0.3
124
Normal
-0.3
356
Normal
-0.3
648
Normal
-0.3
816
Normal
-0.3
138
Normal
-0.3
864
Normal
-0.3
878
Normal
-0.3
572
Normal
-0.3
518
Normal
-0.3
756
Normal
-0.3
527
Tumor
-0.3
981
Tumor
-0.3
982
Normal
-0.3
114
Normal
-0.3
137
Tumor
-0.3
146
Normal
-0.3
376
Normal
-0.3
912
Normal
-0.3
468
Normal
-0.3
917
Tumor
-0.3
722
Normal
-0.3
195
Tumor
-0.3
713
Tumor
-0.3
327
Tumor
-0.3
746
Normal
-0.3
1027
Tumor
-0.4
564
Normal
-0.4
228
Normal
-0.4
328
Normal
-0.4
412
Normal
-0.4
472
Normal
-0.4
554
Normal
-0.4
422
Normal
-0.4
568
Normal
-0.4
916
Normal
-0.4
162
Normal
-0.4
574
Normal
-0.4
482
Normal
-0.4
956
Normal
-0.4
664
Normal
-0.4
286
Normal
-0.4
258
Normal
-0.4
368
Normal
-0.4
456
Normal
-0.4
558
Normal
-0.4
618
Normal
-0.4
662
Normal
-0.4
1042
Normal
-0.4
868
Normal
-0.4
222
Normal
-0.4
462
Normal
-0.4
528
Normal
-0.4
926
Normal
-0.4
312
Normal
-0.4
126
Normal
-0.4
866
Normal
-0.4
172
Normal
-0.4
778
Normal
-0.4
1046
Normal
-0.4
434
Normal
-0.4
446
Normal
-0.4
278
Normal
-0.4
113
Tumor
-0.4
1026
Normal
-0.4
1043
Tumor
-0.4
723
Tumor
-0.4
212
Normal
-0.4
223
Tumor
-0.4
436
Normal
-0.4
738
Normal
-0.5
128
Normal
-0.5
448
Normal
-0.5
474
Normal
-0.5
745
Tumor
-0.5
396
Normal
-0.5
1044
Normal
-0.5
862
Normal
-0.5
111
Normal
-0.5
642
Normal
-0.5
386
Normal
-0.5
526
Normal
-0.5
514
Normal
-0.5
196
Normal
-0.6
388
Normal
-0.6
314
Normal
-0.6
332
Normal
-0.6
214
Normal
-0.6
452
Normal
-0.6
432
Normal
-0.6
617
Tumor
-0.6
394
Normal
-0.7
218
Normal
-0.7
392
Normal
-0.7
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
