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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PBX2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
51.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
31.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
29.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
28.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
27.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
27.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
26.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
24.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
24.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
23.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
23.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
22.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
21.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
21.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
19.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
19.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
19.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
19.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
18.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
17.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
17.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
16.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
16.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
16.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
16.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
16.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
15.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
15.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
15.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
15.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
15.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
14.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
14.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
14.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
14.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
13.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
12.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
11.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
11.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
11.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
10.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
9.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
9.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
8.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
6.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
6.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
6.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
6.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
5.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
5.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
5.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
5.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
4.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
4.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
3.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
3.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
3.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
3.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
3.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
2.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
2.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
2.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
2.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
2.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
2.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
2.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
2.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
2.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
2.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
1.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PBX2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
27.2
Number of samples
231
Samples
Sample
Description
TPM
DO45189
0 years, female, NA, stage:2, alive, 1200 days
94.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
82.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
81.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
68.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
67.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
67.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
67.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
66.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
63.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
63.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
62.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
60.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
59.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
59.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
57.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
56.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
56.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
55.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
55.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
53.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
47.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
46.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
45.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
44.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
44.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
43.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
42.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
41.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
41.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
40.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
39.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
39.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
39.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
38.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
38.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
38.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
37.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
36.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
36.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
36.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
36.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
36.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
36.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
35.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
35.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
35.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
35.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
35.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
34.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
34.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
34.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
34.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
33.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
33.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
33.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
33.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
32.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
32.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
32.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
32.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
31.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
31.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
31.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
31.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
31.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
31.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
30.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
29.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
29.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
29.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
29.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
29.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
29.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
29.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
29.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
28.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
28.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
28.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
28.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
28.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
28.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
28.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
27.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
27.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
27.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
27.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
26.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
26.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
26.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
26.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
26.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
26.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
25.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
25.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
25.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
25.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
25.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
25.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
24.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
24.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
24.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
23.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
23.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
23.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
23.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
23.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
23.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
23.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
23.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
23.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
23.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
23.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
23.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
22.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
22.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
22.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
22.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
22.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
22.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
22.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
22.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
21.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
21.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
21.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
21.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
21.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
21.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
21.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
21.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
21.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
21.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
21.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
21.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
21.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
21.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
21.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
21.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
20.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
20.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
20.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
20.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
20.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
20.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
19.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
19.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
19.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
19.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
19.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
19.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
19.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
19.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
19.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
19.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
19.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
19.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
19.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
19.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
19.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
19.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
19.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
19.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
19.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
18.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
18.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
18.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
18.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
18.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
18.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
18.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
18.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
17.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
17.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
17.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
17.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
17.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
17.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
16.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
16.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
16.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
16.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
16.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
16.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
16.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
16.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
15.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
15.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
15.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
15.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
15.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
14.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
14.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
14.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
14.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.6
131
Tumor
1.5
331
Tumor
1.3
523
Tumor
1.2
737
Tumor
1.0
343
Tumor
1.0
192
Normal
1.0
196
Normal
0.9
661
Tumor
0.9
695
Tumor
0.8
671
Tumor
0.7
357
Tumor
0.7
497
Tumor
0.7
271
Tumor
0.7
351
Tumor
0.7
367
Tumor
0.7
517
Tumor
0.7
283
Tumor
0.6
975
Tumor
0.6
385
Tumor
0.6
285
Tumor
0.6
545
Tumor
0.6
727
Tumor
0.6
463
Tumor
0.6
431
Tumor
0.6
425
Tumor
0.6
672
Normal
0.6
716
Normal
0.6
467
Tumor
0.5
191
Tumor
0.5
813
Tumor
0.5
455
Tumor
0.5
722
Normal
0.5
277
Tumor
0.5
715
Tumor
0.5
877
Tumor
0.5
477
Tumor
0.5
211
Tumor
0.5
222
Normal
0.5
666
Normal
0.5
445
Tumor
0.4
218
Normal
0.4
267
Tumor
0.4
515
Tumor
0.4
195
Tumor
0.4
664
Normal
0.4
817
Tumor
0.4
572
Normal
0.4
814
Normal
0.4
1031
Tumor
0.4
525
Tumor
0.4
435
Tumor
0.4
214
Normal
0.4
433
Tumor
0.4
456
Normal
0.3
662
Normal
0.3
713
Tumor
0.3
465
Tumor
0.3
1041
Tumor
0.3
141
Tumor
0.3
943
Tumor
0.3
146
Normal
0.3
261
Tumor
0.3
297
Tumor
0.3
421
Tumor
0.3
983
Tumor
0.3
473
Tumor
0.3
341
Tumor
0.3
127
Tumor
0.3
686
Normal
0.3
363
Tumor
0.2
665
Tumor
0.2
413
Tumor
0.2
744
Normal
0.2
464
Normal
0.2
452
Normal
0.2
366
Normal
0.2
487
Tumor
0.2
663
Tumor
0.2
138
Normal
0.2
128
Normal
0.2
965
Tumor
0.2
538
Normal
0.2
217
Tumor
0.2
161
Tumor
0.2
268
Normal
0.2
568
Normal
0.2
391
Tumor
0.2
145
Tumor
0.2
471
Tumor
0.2
1025
Tumor
0.2
224
Normal
0.2
648
Normal
0.2
466
Normal
0.2
451
Tumor
0.2
312
Normal
0.2
231
Tumor
0.2
723
Tumor
0.2
136
Normal
0.2
468
Normal
0.2
647
Tumor
0.2
426
Normal
0.2
635
Tumor
0.2
493
Tumor
0.2
696
Normal
0.2
423
Tumor
0.2
881
Tumor
0.2
685
Tumor
0.2
444
Normal
0.1
937
Tumor
0.1
124
Normal
0.1
135
Tumor
0.1
574
Normal
0.1
227
Tumor
0.1
112
Tumor
0.1
571
Tumor
0.1
1021
Tumor
0.1
553
Tumor
0.1
126
Normal
0.1
427
Tumor
0.1
298
Normal
0.1
738
Normal
0.1
724
Normal
0.1
516
Normal
0.1
498
Normal
0.1
883
Tumor
0.1
125
Tumor
0.1
365
Tumor
0.1
513
Tumor
0.1
714
Normal
0.1
492
Normal
0.1
823
Tumor
0.1
443
Tumor
0.1
221
Tumor
0.1
967
Tumor
0.1
742
Normal
0.1
491
Tumor
0.1
741
Tumor
0.1
278
Normal
0.1
123
Tumor
0.1
878
Normal
0.1
364
Normal
0.1
524
Normal
0.1
558
Normal
0.1
258
Normal
0.1
212
Normal
0.1
461
Tumor
0.1
272
Normal
0.1
132
Normal
0.1
313
Tumor
0.1
917
Tumor
0.1
815
Tumor
0.1
185
Tumor
0.1
488
Normal
0.1
564
Normal
0.1
376
Normal
0.1
262
Normal
0.1
361
Tumor
0.1
857
Tumor
0.0
358
Normal
0.0
483
Tumor
0.0
352
Normal
0.0
284
Normal
0.0
1045
Tumor
0.0
228
Normal
0.0
535
Tumor
0.0
641
Tumor
0.0
865
Tumor
0.0
527
Tumor
0.0
286
Normal
0.0
142
Normal
N/A
137
Tumor
0.0
911
Tumor
0.0
368
Normal
0.0
356
Normal
0.0
977
Tumor
0.0
721
Tumor
0.0
446
Normal
0.0
914
Normal
0.0
563
Tumor
0.0
918
Normal
0.0
355
Tumor
0.0
114
Normal
0.0
518
Normal
0.0
213
Tumor
0.0
554
Normal
0.0
536
Normal
0.0
416
Normal
-0.1
257
Tumor
-0.1
478
Normal
-0.1
474
Normal
-0.1
332
Normal
-0.1
546
Normal
-0.1
314
Normal
-0.1
342
Normal
-0.1
494
Normal
-0.1
697
Tumor
-0.1
187
Tumor
-0.1
147
Tumor
-0.1
951
Tumor
-0.1
188
Normal
-0.1
384
Normal
-0.1
232
Normal
-0.1
415
Tumor
-0.1
353
Tumor
-0.1
537
Tumor
-0.1
1042
Normal
-0.1
573
Tumor
-0.1
484
Normal
-0.1
728
Normal
-0.1
434
Normal
-0.1
171
Tumor
-0.1
422
Normal
-0.1
447
Tumor
-0.1
816
Normal
-0.1
953
Tumor
-0.1
424
Normal
-0.1
557
Tumor
-0.1
913
Tumor
-0.1
956
Normal
-0.1
926
Normal
-0.1
412
Normal
-0.1
777
Tumor
-0.1
311
Tumor
-0.2
955
Tumor
-0.2
344
Normal
-0.2
414
Normal
-0.2
1044
Normal
-0.2
884
Normal
-0.2
223
Tumor
-0.2
354
Normal
-0.2
617
Tumor
-0.2
628
Normal
-0.2
472
Normal
-0.2
533
Tumor
-0.2
1013
Tumor
-0.2
818
Normal
-0.2
383
Tumor
-0.2
528
Normal
-0.2
851
Tumor
-0.2
924
Normal
-0.2
113
Tumor
-0.2
785
Tumor
-0.2
436
Normal
-0.2
882
Normal
-0.2
148
Normal
-0.2
852
Normal
-0.2
526
Normal
-0.2
432
Normal
-0.2
698
Normal
-0.2
428
Normal
-0.2
1043
Tumor
-0.2
534
Normal
-0.3
327
Tumor
-0.3
1026
Normal
-0.3
618
Normal
-0.3
1027
Tumor
-0.3
1015
Tumor
-0.3
1032
Normal
-0.3
921
Tumor
-0.3
411
Tumor
-0.3
362
Normal
-0.3
186
Normal
-0.3
858
Normal
-0.3
462
Normal
-0.3
642
Normal
-0.3
968
Normal
-0.3
778
Normal
-0.3
615
Tumor
-0.3
923
Tumor
-0.3
786
Normal
-0.3
1046
Normal
-0.3
448
Normal
-0.3
912
Normal
-0.3
111
Normal
-0.3
952
Normal
-0.3
862
Normal
-0.3
874
Normal
-0.3
755
Tumor
-0.3
567
Tumor
-0.4
1028
Normal
-0.4
328
Normal
-0.4
976
Normal
-0.4
922
Normal
-0.4
481
Tumor
-0.4
957
Tumor
-0.4
863
Tumor
-0.4
958
Normal
-0.4
172
Normal
-0.4
746
Normal
-0.4
627
Tumor
-0.4
963
Tumor
-0.4
745
Tumor
-0.4
636
Normal
-0.4
387
Tumor
-0.4
756
Normal
-0.4
1016
Normal
-0.4
1022
Normal
-0.4
982
Normal
-0.4
964
Normal
-0.5
954
Normal
-0.5
866
Normal
-0.5
824
Normal
-0.5
386
Normal
-0.5
162
Normal
-0.5
482
Normal
-0.5
616
Normal
-0.5
375
Tumor
-0.6
984
Normal
-0.6
396
Normal
-0.6
925
Tumor
-0.6
944
Normal
-0.6
867
Tumor
-0.6
981
Tumor
-0.6
915
Tumor
-0.6
861
Tumor
-0.6
916
Normal
-0.6
388
Normal
-0.6
1014
Normal
-0.7
514
Normal
-0.7
864
Normal
-0.7
395
Tumor
-0.7
938
Normal
-0.7
873
Tumor
-0.7
392
Normal
-0.7
978
Normal
-0.8
966
Normal
-0.8
393
Tumor
-0.8
394
Normal
-0.8
868
Normal
-1.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
