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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TAP2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
29.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
29.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
18.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
10.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
9.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
6.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
4.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
4.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
4.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
4.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
4.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
3.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
3.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
3.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
3.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
3.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
3.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
3.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
3.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
3.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
2.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
2.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
2.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
2.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
2.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
2.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
2.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
2.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
2.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
2.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
2.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
2.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
2.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
2.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
2.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
2.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
2.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
2.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
1.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
1.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
1.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
1.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
1.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
1.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
1.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
1.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
1.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TAP2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.1
Number of samples
231
Samples
Sample
Description
TPM
DO45287
0 years, male, NA, stage:1, alive, 390 days
84.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
82.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
63.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
57.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
56.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
44.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
41.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
41.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
40.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
39.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
39.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
37.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
36.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
35.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
33.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
32.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
32.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
30.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
29.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
28.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
28.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
27.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
26.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
25.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
24.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
24.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
24.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
23.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
23.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
23.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
22.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
21.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
21.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
20.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
20.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
20.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
19.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
19.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
19.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
19.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
18.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
18.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
18.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
17.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
17.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
17.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
17.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
17.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
17.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
16.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
16.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
16.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
16.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
16.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
16.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
15.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
15.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
15.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
14.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
14.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
14.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
14.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
14.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
14.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
13.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
13.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
12.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
11.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
11.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
10.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
10.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
7.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
5.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
4.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
4.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
4.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
4.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
3.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
724
Normal
1.9
1031
Tumor
1.6
213
Tumor
1.5
557
Tumor
1.5
211
Tumor
1.4
661
Tumor
1.4
861
Tumor
1.4
1015
Tumor
1.4
467
Tumor
1.3
917
Tumor
1.3
1043
Tumor
1.3
434
Normal
1.3
113
Tumor
1.1
262
Normal
1.1
383
Tumor
1.1
217
Tumor
0.9
385
Tumor
0.9
755
Tumor
0.9
311
Tumor
0.9
685
Tumor
0.8
188
Normal
0.8
915
Tumor
0.8
451
Tumor
0.7
375
Tumor
0.7
977
Tumor
0.7
327
Tumor
0.6
823
Tumor
0.6
966
Normal
0.6
914
Normal
0.6
814
Normal
0.6
573
Tumor
0.5
721
Tumor
0.5
261
Tumor
0.5
455
Tumor
0.5
524
Normal
0.5
362
Normal
0.5
343
Tumor
0.5
663
Tumor
0.4
978
Normal
0.4
491
Tumor
0.4
535
Tumor
0.4
387
Tumor
0.4
355
Tumor
0.4
492
Normal
0.4
493
Tumor
0.4
857
Tumor
0.4
523
Tumor
0.4
147
Tumor
0.4
127
Tumor
0.4
937
Tumor
0.4
135
Tumor
0.3
497
Tumor
0.3
867
Tumor
0.3
395
Tumor
0.3
126
Normal
0.3
283
Tumor
0.3
141
Tumor
0.3
468
Normal
0.3
1027
Tumor
0.3
277
Tumor
0.3
865
Tumor
0.3
427
Tumor
0.2
536
Normal
0.2
125
Tumor
0.2
883
Tumor
0.2
267
Tumor
0.2
686
Normal
0.2
161
Tumor
0.2
191
Tumor
0.2
366
Normal
0.2
745
Tumor
0.2
195
Tumor
0.2
913
Tumor
0.2
433
Tumor
0.2
785
Tumor
0.2
185
Tumor
0.2
187
Tumor
0.2
365
Tumor
0.2
487
Tumor
0.1
628
Normal
0.1
963
Tumor
0.1
146
Normal
0.1
641
Tumor
0.1
123
Tumor
0.1
471
Tumor
0.1
516
Normal
0.1
432
Normal
0.1
627
Tumor
0.1
916
Normal
0.1
386
Normal
0.1
957
Tumor
0.1
851
Tumor
0.1
953
Tumor
0.1
662
Normal
0.1
461
Tumor
0.1
975
Tumor
0.1
145
Tumor
0.1
313
Tumor
0.1
212
Normal
0.1
525
Tumor
0.1
384
Normal
0.1
443
Tumor
0.0
478
Normal
0.0
413
Tumor
0.0
353
Tumor
0.0
943
Tumor
0.0
142
Normal
0.0
231
Tumor
0.0
268
Normal
0.0
138
Normal
0.0
514
Normal
0.0
258
Normal
0.0
221
Tumor
0.0
456
Normal
0.0
284
Normal
0.0
635
Tumor
0.0
357
Tumor
0.0
741
Tumor
0.0
114
Normal
0.0
852
Normal
0.0
533
Tumor
0.0
956
Normal
0.0
218
Normal
0.0
955
Tumor
0.0
925
Tumor
0.0
421
Tumor
0.0
444
Normal
0.0
172
Normal
0.0
513
Tumor
-0.1
136
Normal
-0.1
132
Normal
-0.1
227
Tumor
-0.1
553
Tumor
-0.1
447
Tumor
-0.1
358
Normal
-0.1
137
Tumor
-0.1
367
Tumor
-0.1
558
Normal
-0.1
425
Tumor
-0.1
951
Tumor
-0.1
192
Normal
-0.1
272
Normal
-0.1
777
Tumor
-0.1
224
Normal
-0.1
446
Normal
-0.1
445
Tumor
-0.1
124
Normal
-0.1
1013
Tumor
-0.1
922
Normal
-0.1
396
Normal
-0.1
1028
Normal
-0.1
615
Tumor
-0.1
574
Normal
-0.1
214
Normal
-0.1
716
Normal
-0.2
498
Normal
-0.2
232
Normal
-0.2
332
Normal
-0.2
1041
Tumor
-0.2
567
Tumor
-0.2
352
Normal
-0.2
257
Tumor
-0.2
813
Tumor
-0.2
452
Normal
-0.2
1044
Normal
-0.2
952
Normal
-0.2
466
Normal
-0.2
526
Normal
-0.2
881
Tumor
-0.2
527
Tumor
-0.2
361
Tumor
-0.2
697
Tumor
-0.2
817
Tumor
-0.2
858
Normal
-0.2
111
Normal
-0.2
344
Normal
-0.2
1016
Normal
-0.2
223
Tumor
-0.2
391
Tumor
-0.2
672
Normal
-0.2
388
Normal
-0.2
416
Normal
-0.2
528
Normal
-0.2
271
Tumor
-0.2
162
Normal
-0.2
564
Normal
-0.2
695
Tumor
-0.2
518
Normal
-0.2
368
Normal
-0.2
873
Tumor
-0.2
494
Normal
-0.2
423
Tumor
-0.3
664
Normal
-0.3
815
Tumor
-0.3
816
Normal
-0.3
864
Normal
-0.3
874
Normal
-0.3
351
Tumor
-0.3
1042
Normal
-0.3
228
Normal
-0.3
411
Tumor
-0.3
394
Normal
-0.3
666
Normal
-0.3
128
Normal
-0.3
431
Tumor
-0.3
563
Tumor
-0.3
538
Normal
-0.3
312
Normal
-0.3
918
Normal
-0.3
464
Normal
-0.3
572
Normal
-0.3
148
Normal
-0.3
738
Normal
-0.3
786
Normal
-0.3
923
Tumor
-0.3
756
Normal
-0.3
954
Normal
-0.3
286
Normal
-0.3
877
Tumor
-0.3
1021
Tumor
-0.3
976
Normal
-0.4
742
Normal
-0.4
186
Normal
-0.4
171
Tumor
-0.4
341
Tumor
-0.4
571
Tumor
-0.4
778
Normal
-0.4
818
Normal
-0.4
422
Normal
-0.4
636
Normal
-0.4
392
Normal
-0.4
728
Normal
-0.4
696
Normal
-0.4
436
Normal
-0.4
393
Tumor
-0.4
1014
Normal
-0.4
968
Normal
-0.4
984
Normal
-0.4
474
Normal
-0.4
477
Tumor
-0.4
414
Normal
-0.4
278
Normal
-0.4
297
Tumor
-0.4
713
Tumor
-0.4
354
Normal
-0.4
435
Tumor
-0.4
617
Tumor
-0.4
866
Normal
-0.4
862
Normal
-0.4
727
Tumor
-0.4
463
Tumor
-0.4
426
Normal
-0.4
648
Normal
-0.4
376
Normal
-0.4
537
Tumor
-0.4
356
Normal
-0.4
665
Tumor
-0.4
328
Normal
-0.4
824
Normal
-0.4
222
Normal
-0.4
715
Tumor
-0.4
424
Normal
-0.4
647
Tumor
-0.4
618
Normal
-0.4
415
Tumor
-0.4
671
Tumor
-0.4
546
Normal
-0.4
481
Tumor
-0.4
868
Normal
-0.4
448
Normal
-0.4
863
Tumor
-0.4
483
Tumor
-0.5
982
Normal
-0.5
364
Normal
-0.5
926
Normal
-0.5
465
Tumor
-0.5
642
Normal
-0.5
722
Normal
-0.5
554
Normal
-0.5
1045
Tumor
-0.5
534
Normal
-0.5
1025
Tumor
-0.5
944
Normal
-0.5
196
Normal
-0.5
1046
Normal
-0.5
1026
Normal
-0.5
958
Normal
-0.5
515
Tumor
-0.5
938
Normal
-0.5
714
Normal
-0.5
412
Normal
-0.5
1022
Normal
-0.5
428
Normal
-0.6
884
Normal
-0.6
462
Normal
-0.6
924
Normal
-0.6
488
Normal
-0.6
482
Normal
-0.6
967
Tumor
-0.6
616
Normal
-0.6
723
Tumor
-0.6
983
Tumor
-0.6
342
Normal
-0.6
878
Normal
-0.6
298
Normal
-0.6
568
Normal
-0.6
112
Tumor
-0.6
737
Tumor
-0.6
981
Tumor
-0.6
921
Tumor
-0.6
744
Normal
-0.6
882
Normal
-0.6
698
Normal
-0.6
1032
Normal
-0.7
964
Normal
-0.7
314
Normal
-0.7
472
Normal
-0.7
473
Tumor
-0.7
912
Normal
-0.7
363
Tumor
-0.8
517
Tumor
-0.8
331
Tumor
-0.8
746
Normal
-0.8
911
Tumor
-0.8
484
Normal
-0.9
545
Tumor
-0.9
131
Tumor
-0.9
285
Tumor
-0.9
965
Tumor
-1.2
743
Tumor
-1.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
