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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMB8 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
88.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
49.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
41.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
40.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
35.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
33.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
32.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
31.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
31.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
30.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
30.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
29.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
28.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
28.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
27.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
26.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
26.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
25.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
25.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
24.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
24.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
24.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
23.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
23.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
23.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
23.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
23.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
22.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
22.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
22.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
22.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
22.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
21.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
21.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
21.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
21.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
21.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
21.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
20.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
20.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
20.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
20.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
20.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
20.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
20.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
19.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
19.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
19.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
19.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
18.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
18.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
18.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
18.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
18.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
18.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
18.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
18.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
17.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
17.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
17.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
17.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
17.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
17.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
17.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
17.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
17.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
16.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
16.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
16.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
16.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
16.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
16.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
15.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
15.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
15.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
15.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
15.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
14.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
14.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
14.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
14.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
14.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
14.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
14.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
13.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
13.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
13.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
13.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
13.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
13.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
13.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
13.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
13.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
12.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
12.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
12.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
12.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
12.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
11.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
10.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
8.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
8.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
6.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
6.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
5.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
4.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
4.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
4.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
4.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
3.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
2.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
2.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
2.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
1.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMB8 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
76.3
Number of samples
231
Samples
Sample
Description
TPM
DO45277
0 years, male, NA, stage:3, alive, 600 days
436.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
309.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
276.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
231.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
225.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
222.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
204.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
195.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
190.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
182.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
181.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
177.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
170.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
165.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
162.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
162.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
160.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
156.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
155.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
153.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
151.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
150.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
149.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
147.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
144.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
144.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
141.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
140.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
132.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
130.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
127.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
126.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
126.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
124.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
121.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
118.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
118.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
116.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
115.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
112.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
112.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
110.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
110.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
109.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
109.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
108.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
107.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
104.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
104.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
102.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
102.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
101.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
101.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
101.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
100.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
99.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
99.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
99.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
99.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
98.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
98.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
97.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
96.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
94.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
94.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
94.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
94.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
93.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
92.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
89.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
88.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
88.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
87.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
87.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
87.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
85.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
85.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
85.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
84.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
84.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
83.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
83.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
83.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
81.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
81.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
80.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
79.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
79.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
79.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
79.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
78.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
78.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
77.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
76.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
74.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
73.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
72.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
72.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
71.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
71.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
70.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
70.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
69.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
69.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
69.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
68.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
68.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
66.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
65.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
65.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
64.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
63.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
63.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
62.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
61.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
61.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
61.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
59.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
59.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
58.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
57.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
57.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
56.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
56.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
56.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
56.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
56.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
56.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
55.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
55.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
55.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
54.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
54.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
54.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
54.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
53.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
53.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
53.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
53.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
52.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
50.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
50.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
50.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
50.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
49.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
49.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
48.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
48.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
47.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
47.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
46.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
46.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
45.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
45.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
45.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
45.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
44.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
44.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
44.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
44.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
43.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
43.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
43.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
42.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
42.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
42.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
42.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
42.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
41.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
41.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
41.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
40.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
40.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
38.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
38.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
38.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
37.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
37.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
37.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
36.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
36.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
36.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
36.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
35.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
35.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
35.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
35.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
34.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
33.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
32.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
32.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
32.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
32.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
31.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
31.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
30.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
30.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
30.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
30.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
30.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
29.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
29.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
29.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
28.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
28.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
27.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
26.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
25.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
25.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
22.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
22.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
22.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
22.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
22.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
21.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
20.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
20.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
19.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
18.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
18.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
18.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
16.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
9.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
4.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
966
Normal
0.7
952
Normal
0.6
327
Tumor
0.6
755
Tumor
0.6
777
Tumor
0.6
416
Normal
0.5
955
Tumor
0.4
957
Tumor
0.4
686
Normal
0.4
113
Tumor
0.4
218
Normal
0.4
147
Tumor
0.4
914
Normal
0.4
1022
Normal
0.4
362
Normal
0.4
1015
Tumor
0.4
742
Normal
0.4
432
Normal
0.4
141
Tumor
0.4
366
Normal
0.4
978
Normal
0.3
724
Normal
0.3
627
Tumor
0.3
938
Normal
0.3
558
Normal
0.3
738
Normal
0.3
778
Normal
0.3
816
Normal
0.3
861
Tumor
0.3
436
Normal
0.3
448
Normal
0.3
1043
Tumor
0.3
434
Normal
0.3
1026
Normal
0.3
953
Tumor
0.3
114
Normal
0.3
756
Normal
0.3
126
Normal
0.3
213
Tumor
0.3
745
Tumor
0.3
716
Normal
0.3
698
Normal
0.3
516
Normal
0.3
982
Normal
0.3
956
Normal
0.3
857
Tumor
0.3
852
Normal
0.3
1016
Normal
0.3
723
Tumor
0.3
261
Tumor
0.3
523
Tumor
0.3
696
Normal
0.3
925
Tumor
0.3
188
Normal
0.3
286
Normal
0.3
128
Normal
0.3
662
Normal
0.3
568
Normal
0.3
1014
Normal
0.3
514
Normal
0.3
313
Tumor
0.3
721
Tumor
0.3
546
Normal
0.2
628
Normal
0.2
355
Tumor
0.2
513
Tumor
0.2
728
Normal
0.2
714
Normal
0.2
452
Normal
0.2
1028
Normal
0.2
515
Tumor
0.2
518
Normal
0.2
666
Normal
0.2
212
Normal
0.2
1044
Normal
0.2
968
Normal
0.2
858
Normal
0.2
456
Normal
0.2
824
Normal
0.2
353
Tumor
0.2
111
Normal
0.2
376
Normal
0.2
648
Normal
0.2
1027
Tumor
0.2
746
Normal
0.2
557
Tumor
0.2
664
Normal
0.2
867
Tumor
0.2
823
Tumor
0.2
1013
Tumor
0.2
951
Tumor
0.2
572
Normal
0.2
874
Normal
0.2
528
Normal
0.2
386
Normal
0.2
414
Normal
0.2
695
Tumor
0.2
865
Tumor
0.2
214
Normal
0.2
468
Normal
0.2
358
Normal
0.2
554
Normal
0.2
786
Normal
0.2
262
Normal
0.2
964
Normal
0.2
228
Normal
0.2
196
Normal
0.2
884
Normal
0.1
298
Normal
0.1
534
Normal
0.1
312
Normal
0.1
866
Normal
0.1
526
Normal
0.1
785
Tumor
0.1
494
Normal
0.1
364
Normal
0.1
217
Tumor
0.1
124
Normal
0.1
685
Tumor
0.1
328
Normal
0.1
1046
Normal
0.1
926
Normal
0.1
922
Normal
0.1
1045
Tumor
0.1
412
Normal
0.1
278
Normal
0.1
661
Tumor
0.1
356
Normal
0.1
272
Normal
0.1
882
Normal
0.1
944
Normal
0.1
224
Normal
0.1
574
Normal
0.1
342
Normal
0.1
878
Normal
0.1
958
Normal
0.1
616
Normal
0.1
211
Tumor
0.1
564
Normal
0.1
195
Tumor
0.1
344
Normal
0.1
284
Normal
0.1
461
Tumor
0.1
142
Normal
0.1
536
Normal
0.1
573
Tumor
0.1
482
Normal
0.1
487
Tumor
0.1
146
Normal
0.1
663
Tumor
0.1
186
Normal
0.1
524
Normal
0.1
924
Normal
0.1
474
Normal
0.1
222
Normal
0.1
467
Tumor
0.1
383
Tumor
0.1
722
Normal
0.0
466
Normal
0.0
918
Normal
0.0
415
Tumor
0.0
1042
Normal
0.0
462
Normal
0.0
984
Normal
0.0
864
Normal
0.0
493
Tumor
0.0
618
Normal
0.0
484
Normal
0.0
422
Normal
0.0
191
Tumor
0.0
365
Tumor
0.0
172
Normal
0.0
136
Normal
0.0
1031
Tumor
0.0
883
Tumor
0.0
396
Normal
0.0
492
Normal
0.0
916
Normal
0.0
488
Normal
0.0
538
Normal
0.0
873
Tumor
0.0
148
Normal
0.0
392
Normal
0.0
862
Normal
0.0
636
Normal
0.0
818
Normal
0.0
472
Normal
N/A
917
Tumor
0.0
192
Normal
0.0
741
Tumor
0.0
913
Tumor
0.0
954
Normal
0.0
615
Tumor
0.0
352
Normal
0.0
127
Tumor
0.0
232
Normal
0.0
161
Tumor
0.0
368
Normal
0.0
311
Tumor
0.0
138
Normal
0.0
162
Normal
0.0
672
Normal
0.0
375
Tumor
0.0
464
Normal
0.0
258
Normal
0.0
388
Normal
0.0
384
Normal
0.0
426
Normal
0.0
498
Normal
0.0
332
Normal
-0.1
976
Normal
-0.1
277
Tumor
-0.1
912
Normal
-0.1
137
Tumor
-0.1
915
Tumor
-0.1
424
Normal
-0.1
981
Tumor
-0.1
455
Tumor
-0.1
471
Tumor
-0.1
354
Normal
-0.1
314
Normal
-0.1
937
Tumor
-0.1
394
Normal
-0.1
393
Tumor
-0.1
446
Normal
-0.1
223
Tumor
-0.1
744
Normal
-0.1
553
Tumor
-0.1
497
Tumor
-0.1
617
Tumor
-0.1
185
Tumor
-0.1
1032
Normal
-0.1
451
Tumor
-0.1
814
Normal
-0.1
423
Tumor
-0.1
635
Tumor
-0.1
444
Normal
-0.1
727
Tumor
-0.1
1041
Tumor
-0.1
868
Normal
-0.1
642
Normal
-0.1
395
Tumor
-0.2
428
Normal
-0.2
977
Tumor
-0.2
132
Normal
-0.2
411
Tumor
-0.2
478
Normal
-0.2
975
Tumor
-0.2
911
Tumor
-0.2
387
Tumor
-0.2
341
Tumor
-0.2
343
Tumor
-0.2
1021
Tumor
-0.2
465
Tumor
-0.2
481
Tumor
-0.2
477
Tumor
-0.2
433
Tumor
-0.2
361
Tumor
-0.2
268
Normal
-0.2
923
Tumor
-0.3
267
Tumor
-0.3
135
Tumor
-0.3
533
Tumor
-0.3
187
Tumor
-0.3
491
Tumor
-0.3
447
Tumor
-0.3
963
Tumor
-0.3
527
Tumor
-0.3
385
Tumor
-0.3
647
Tumor
-0.3
881
Tumor
-0.3
443
Tumor
-0.3
1025
Tumor
-0.3
563
Tumor
-0.4
567
Tumor
-0.4
271
Tumor
-0.4
697
Tumor
-0.4
427
Tumor
-0.4
943
Tumor
-0.4
445
Tumor
-0.4
535
Tumor
-0.4
813
Tumor
-0.4
851
Tumor
-0.4
525
Tumor
-0.4
221
Tumor
-0.5
145
Tumor
-0.5
123
Tumor
-0.5
421
Tumor
-0.5
715
Tumor
-0.5
863
Tumor
-0.5
641
Tumor
-0.5
283
Tumor
-0.5
171
Tumor
-0.5
125
Tumor
-0.5
737
Tumor
-0.5
357
Tumor
-0.5
257
Tumor
-0.5
413
Tumor
-0.6
665
Tumor
-0.6
431
Tumor
-0.6
297
Tumor
-0.6
227
Tumor
-0.6
483
Tumor
-0.6
231
Tumor
-0.7
983
Tumor
-0.7
517
Tumor
-0.7
435
Tumor
-0.7
713
Tumor
-0.7
537
Tumor
-0.7
367
Tumor
-0.7
112
Tumor
-0.8
967
Tumor
-0.8
817
Tumor
-0.8
391
Tumor
-0.8
425
Tumor
-0.8
463
Tumor
-0.9
285
Tumor
-0.9
473
Tumor
-0.9
877
Tumor
-0.9
921
Tumor
-0.9
363
Tumor
-1.0
545
Tumor
-1.0
671
Tumor
-1.0
351
Tumor
-1.0
331
Tumor
-1.2
815
Tumor
-1.2
571
Tumor
-1.2
965
Tumor
-1.2
131
Tumor
-1.8
743
Tumor
-2.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
