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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BRD2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
37.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
37.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
33.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
29.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
27.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
24.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
24.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
23.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
23.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
22.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
22.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
20.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
20.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
20.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
20.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
18.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
17.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
17.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
16.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
16.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
15.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
15.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
15.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
14.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
13.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
11.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
11.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
8.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
8.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
8.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
7.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
7.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
6.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
6.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
5.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
4.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
4.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
4.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
3.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
3.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
2.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
2.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
2.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
1.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
1.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
1.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BRD2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
67.0
Number of samples
231
Samples
Sample
Description
TPM
DO48746
0 years, male, NA, stage:3, alive, 570 days
289.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
159.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
155.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
152.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
137.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
136.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
135.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
134.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
131.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
123.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
120.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
111.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
108.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
108.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
107.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
106.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
106.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
104.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
103.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
102.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
99.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
96.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
95.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
95.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
95.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
94.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
93.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
91.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
91.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
90.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
90.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
90.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
89.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
88.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
88.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
88.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
86.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
86.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
85.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
85.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
85.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
84.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
84.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
84.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
84.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
83.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
83.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
82.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
82.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
81.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
79.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
79.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
79.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
78.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
77.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
77.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
77.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
76.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
76.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
76.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
76.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
75.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
75.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
75.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
75.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
74.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
74.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
74.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
74.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
74.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
74.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
74.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
73.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
72.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
71.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
71.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
71.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
71.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
70.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
69.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
69.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
68.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
68.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
68.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
68.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
67.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
67.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
67.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
66.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
66.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
65.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
65.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
65.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
65.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
64.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
64.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
64.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
64.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
64.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
64.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
64.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
64.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
64.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
63.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
63.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
63.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
63.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
63.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
63.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
63.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
62.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
62.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
62.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
62.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
62.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
62.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
62.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
62.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
61.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
61.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
61.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
61.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
61.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
61.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
61.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
60.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
60.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
60.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
60.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
60.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
60.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
59.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
59.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
59.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
59.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
58.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
58.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
58.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
58.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
57.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
56.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
56.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
56.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
56.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
56.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
56.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
56.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
55.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
55.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
55.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
55.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
55.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
55.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
54.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
54.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
54.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
53.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
53.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
53.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
53.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
53.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
52.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
52.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
52.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
52.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
52.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
51.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
51.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
51.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
51.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
50.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
50.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
49.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
49.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
49.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
49.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
49.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
49.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
48.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
48.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
48.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
48.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
48.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
48.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
48.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
47.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
47.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
47.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
47.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
47.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
47.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
46.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
46.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
46.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
46.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
46.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
45.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
45.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
45.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
43.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
43.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
43.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
43.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
42.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
42.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
41.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
41.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
41.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
41.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
39.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
38.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
38.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
37.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
37.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
37.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
37.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
36.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
36.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
36.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
35.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
33.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
33.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
28.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
28.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
27.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
26.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
26.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
25.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
24.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
23.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
21.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
123
Tumor
0.9
965
Tumor
0.8
977
Tumor
0.8
191
Tumor
0.8
957
Tumor
0.8
497
Tumor
0.8
161
Tumor
0.7
911
Tumor
0.7
211
Tumor
0.7
663
Tumor
0.7
1013
Tumor
0.7
411
Tumor
0.6
1041
Tumor
0.6
865
Tumor
0.6
951
Tumor
0.6
355
Tumor
0.6
413
Tumor
0.6
351
Tumor
0.6
661
Tumor
0.6
131
Tumor
0.6
431
Tumor
0.6
535
Tumor
0.5
813
Tumor
0.5
385
Tumor
0.5
715
Tumor
0.5
913
Tumor
0.5
877
Tumor
0.5
923
Tumor
0.5
313
Tumor
0.5
127
Tumor
0.5
777
Tumor
0.5
427
Tumor
0.5
983
Tumor
0.5
425
Tumor
0.5
943
Tumor
0.5
112
Tumor
0.5
367
Tumor
0.5
331
Tumor
0.4
685
Tumor
0.4
523
Tumor
0.4
695
Tumor
0.4
213
Tumor
0.4
823
Tumor
0.4
467
Tumor
0.4
533
Tumor
0.4
493
Tumor
0.4
1025
Tumor
0.4
814
Normal
0.4
517
Tumor
0.4
545
Tumor
0.4
463
Tumor
0.4
343
Tumor
0.4
375
Tumor
0.4
953
Tumor
0.3
537
Tumor
0.3
785
Tumor
0.3
553
Tumor
0.3
527
Tumor
0.3
357
Tumor
0.3
883
Tumor
0.3
277
Tumor
0.3
433
Tumor
0.3
487
Tumor
0.3
573
Tumor
0.3
311
Tumor
0.3
737
Tumor
0.3
473
Tumor
0.3
445
Tumor
0.3
135
Tumor
0.3
815
Tumor
0.3
271
Tumor
0.3
261
Tumor
0.3
267
Tumor
0.3
171
Tumor
0.3
443
Tumor
0.3
975
Tumor
0.3
1045
Tumor
0.3
141
Tumor
0.3
881
Tumor
0.2
724
Normal
0.2
186
Normal
0.2
557
Tumor
0.2
395
Tumor
0.2
563
Tumor
0.2
387
Tumor
0.2
817
Tumor
0.2
391
Tumor
0.2
635
Tumor
0.2
455
Tumor
0.2
227
Tumor
0.2
641
Tumor
0.2
1027
Tumor
0.2
283
Tumor
0.2
483
Tumor
0.2
665
Tumor
0.2
721
Tumor
0.2
192
Normal
0.2
383
Tumor
0.2
917
Tumor
0.2
1021
Tumor
0.2
162
Normal
0.2
145
Tumor
0.2
536
Normal
0.1
137
Tumor
0.1
515
Tumor
0.1
1031
Tumor
0.1
231
Tumor
0.1
146
Normal
0.1
285
Tumor
0.1
477
Tumor
0.1
471
Tumor
0.1
341
Tumor
0.1
873
Tumor
0.1
221
Tumor
0.1
647
Tumor
0.1
727
Tumor
0.1
963
Tumor
0.1
465
Tumor
0.1
538
Normal
0.1
423
Tumor
0.1
188
Normal
0.1
697
Tumor
0.1
615
Tumor
0.1
863
Tumor
0.1
421
Tumor
0.1
861
Tumor
0.1
447
Tumor
0.1
384
Normal
0.1
698
Normal
0.1
867
Tumor
0.1
444
Normal
0.1
185
Tumor
0.1
874
Normal
0.1
297
Tumor
0.0
435
Tumor
0.0
257
Tumor
0.0
148
Normal
0.0
434
Normal
0.0
147
Tumor
0.0
491
Tumor
0.0
574
Normal
0.0
217
Tumor
0.0
925
Tumor
0.0
567
Tumor
0.0
671
Tumor
0.0
741
Tumor
0.0
396
Normal
0.0
478
Normal
0.0
446
Normal
0.0
524
Normal
0.0
432
Normal
0.0
393
Tumor
0.0
138
Normal
0.0
534
Normal
0.0
1046
Normal
0.0
126
Normal
0.0
113
Tumor
0.0
461
Tumor
0.0
862
Normal
0.0
528
Normal
0.0
966
Normal
0.0
124
Normal
0.0
386
Normal
0.0
912
Normal
0.0
984
Normal
0.0
745
Tumor
0.0
884
Normal
0.0
114
Normal
0.0
525
Tumor
0.0
312
Normal
0.0
756
Normal
0.0
492
Normal
0.0
1032
Normal
0.0
664
Normal
0.0
187
Tumor
0.0
744
Normal
0.0
864
Normal
0.0
755
Tumor
0.0
426
Normal
-0.1
662
Normal
-0.1
937
Tumor
-0.1
356
Normal
-0.1
636
Normal
-0.1
172
Normal
-0.1
672
Normal
-0.1
915
Tumor
-0.1
1014
Normal
-0.1
958
Normal
-0.1
716
Normal
-0.1
328
Normal
-0.1
554
Normal
-0.1
954
Normal
-0.1
366
Normal
-0.1
572
Normal
-0.1
516
Normal
-0.1
498
Normal
-0.1
882
Normal
-0.1
314
Normal
-0.1
921
Tumor
-0.1
778
Normal
-0.1
298
Normal
-0.1
488
Normal
-0.1
416
Normal
-0.1
924
Normal
-0.1
857
Tumor
-0.1
361
Tumor
-0.1
978
Normal
-0.1
284
Normal
-0.1
1044
Normal
-0.1
142
Normal
-0.1
851
Tumor
-0.1
415
Tumor
-0.1
448
Normal
-0.1
571
Tumor
-0.1
546
Normal
-0.1
132
Normal
-0.1
1043
Tumor
-0.1
568
Normal
-0.1
878
Normal
-0.1
412
Normal
-0.1
955
Tumor
-0.1
352
Normal
-0.1
364
Normal
-0.1
1042
Normal
-0.1
368
Normal
-0.1
481
Tumor
-0.1
564
Normal
-0.1
195
Tumor
-0.1
472
Normal
-0.1
362
Normal
-0.1
513
Tumor
-0.1
365
Tumor
-0.1
214
Normal
-0.1
922
Normal
-0.1
916
Normal
-0.1
136
Normal
-0.1
866
Normal
-0.1
451
Tumor
-0.1
327
Tumor
-0.1
746
Normal
-0.1
518
Normal
-0.1
738
Normal
-0.1
332
Normal
-0.1
344
Normal
-0.1
628
Normal
-0.1
944
Normal
-0.1
278
Normal
-0.1
642
Normal
-0.1
494
Normal
-0.1
1028
Normal
-0.1
462
Normal
-0.1
224
Normal
-0.1
1016
Normal
-0.2
1026
Normal
-0.2
686
Normal
-0.2
223
Tumor
-0.2
964
Normal
-0.2
976
Normal
-0.2
466
Normal
-0.2
212
Normal
-0.2
464
Normal
-0.2
1015
Tumor
-0.2
868
Normal
-0.2
558
Normal
-0.2
824
Normal
-0.2
818
Normal
-0.2
394
Normal
-0.2
627
Tumor
-0.2
786
Normal
-0.2
228
Normal
-0.2
918
Normal
-0.2
218
Normal
-0.2
354
Normal
-0.2
363
Tumor
-0.2
376
Normal
-0.2
286
Normal
-0.2
388
Normal
-0.2
436
Normal
-0.2
392
Normal
-0.2
914
Normal
-0.2
452
Normal
-0.2
1022
Normal
-0.2
852
Normal
-0.2
858
Normal
-0.2
742
Normal
-0.2
196
Normal
-0.2
714
Normal
-0.2
456
Normal
-0.2
424
Normal
-0.2
617
Tumor
-0.2
482
Normal
-0.2
468
Normal
-0.2
128
Normal
-0.2
648
Normal
-0.2
938
Normal
-0.2
982
Normal
-0.2
666
Normal
-0.2
696
Normal
-0.2
125
Tumor
-0.2
956
Normal
-0.2
484
Normal
-0.2
526
Normal
-0.2
353
Tumor
-0.2
414
Normal
-0.2
514
Normal
-0.3
968
Normal
-0.3
926
Normal
-0.3
474
Normal
-0.3
722
Normal
-0.3
952
Normal
-0.3
728
Normal
-0.3
616
Normal
-0.3
272
Normal
-0.3
358
Normal
-0.3
422
Normal
-0.3
713
Tumor
-0.3
816
Normal
-0.3
723
Tumor
-0.3
342
Normal
-0.3
981
Tumor
-0.3
222
Normal
-0.3
428
Normal
-0.3
111
Normal
-0.3
268
Normal
-0.3
262
Normal
-0.3
232
Normal
-0.4
258
Normal
-0.4
618
Normal
-0.4
967
Tumor
-0.6
743
Tumor
-0.8
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
