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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
OXLD1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
129.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
126.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
101.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
78.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
75.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
71.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
67.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
61.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
56.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
52.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
51.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
51.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
50.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
50.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
47.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
47.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
45.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
43.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
43.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
43.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
43.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
42.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
42.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
39.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
38.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
38.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
37.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
37.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
37.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
37.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
36.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
36.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
35.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
35.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
35.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
34.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
34.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
33.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
33.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
33.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
33.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
33.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
33.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
32.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
32.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
32.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
32.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
31.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
31.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
31.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
30.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
30.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
30.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
30.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
30.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
29.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
29.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
29.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
29.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
29.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
29.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
29.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
28.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
28.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
28.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
28.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
27.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
27.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
27.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
27.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
27.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
26.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
26.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
26.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
26.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
26.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
26.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
26.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
26.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
26.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
26.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
26.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
25.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
25.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
25.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
25.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
25.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
25.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
25.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
24.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
24.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
24.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
24.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
24.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
24.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
23.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
23.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
23.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
23.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
23.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
23.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
23.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
23.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
23.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
23.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
23.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
23.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
22.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
22.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
22.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
22.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
22.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
22.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
22.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
22.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
22.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
21.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
21.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
21.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
21.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
21.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
20.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
20.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
20.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
20.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
20.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
20.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
20.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
20.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
20.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
20.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
20.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
20.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
20.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
20.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
20.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
20.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
20.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
20.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
20.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
20.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
20.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
20.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
19.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
19.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
19.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
19.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
19.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
19.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
19.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
19.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
19.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
19.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
18.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
18.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
18.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
18.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
18.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
18.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
18.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
18.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
18.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
18.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
18.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
18.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
18.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
18.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
18.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
18.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
18.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
18.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
18.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
17.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
17.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
17.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
17.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
17.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
17.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
17.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
17.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
17.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
17.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
17.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
17.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
17.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
17.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
16.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
16.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
16.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
16.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
16.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
16.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
16.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
16.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
16.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
16.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
16.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
16.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
16.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
16.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
16.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
15.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
15.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
15.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
15.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
15.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
15.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
15.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
15.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
15.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
15.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
15.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
14.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
14.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
14.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
14.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
14.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
14.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
14.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
14.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
13.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
13.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
13.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
13.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
13.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
13.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
12.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
12.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
12.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
10.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
9.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
7.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
6.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
2.2
741
Tumor
2.1
465
Tumor
1.8
477
Tumor
1.4
627
Tumor
1.4
423
Tumor
1.4
685
Tumor
1.1
1041
Tumor
1.1
745
Tumor
1.1
911
Tumor
1.1
981
Tumor
1.0
435
Tumor
1.0
925
Tumor
1.0
361
Tumor
0.9
867
Tumor
0.9
433
Tumor
0.9
957
Tumor
0.9
1027
Tumor
0.9
615
Tumor
0.9
123
Tumor
0.8
513
Tumor
0.8
915
Tumor
0.8
563
Tumor
0.8
861
Tumor
0.8
714
Normal
0.7
913
Tumor
0.7
137
Tumor
0.6
431
Tumor
0.6
411
Tumor
0.6
716
Normal
0.6
912
Normal
0.6
267
Tumor
0.6
695
Tumor
0.6
715
Tumor
0.5
1045
Tumor
0.5
515
Tumor
0.5
112
Tumor
0.5
231
Tumor
0.5
365
Tumor
0.5
953
Tumor
0.5
564
Normal
0.5
572
Normal
0.5
944
Normal
0.5
452
Normal
0.5
686
Normal
0.5
356
Normal
0.5
777
Tumor
0.5
785
Tumor
0.5
742
Normal
0.5
636
Normal
0.4
342
Normal
0.4
857
Tumor
0.4
696
Normal
0.4
756
Normal
0.4
481
Tumor
0.4
722
Normal
0.4
128
Normal
0.4
882
Normal
0.4
744
Normal
0.3
483
Tumor
0.3
557
Tumor
0.3
526
Normal
0.3
352
Normal
0.3
554
Normal
0.3
863
Tumor
0.3
525
Tumor
0.3
1046
Normal
0.3
1013
Tumor
0.3
938
Normal
0.3
473
Tumor
0.3
977
Tumor
0.3
436
Normal
0.3
358
Normal
0.3
721
Tumor
0.3
954
Normal
0.3
964
Normal
0.3
727
Tumor
0.3
171
Tumor
0.3
448
Normal
0.3
493
Tumor
0.3
862
Normal
0.3
357
Tumor
0.3
355
Tumor
0.3
883
Tumor
0.2
728
Normal
0.2
344
Normal
0.2
354
Normal
0.2
955
Tumor
0.2
786
Normal
0.2
635
Tumor
0.2
432
Normal
0.2
858
Normal
0.2
257
Tumor
0.2
127
Tumor
0.2
186
Normal
0.2
466
Normal
0.2
746
Normal
0.2
571
Tumor
0.2
698
Normal
0.2
924
Normal
0.2
884
Normal
0.2
665
Tumor
0.2
393
Tumor
0.2
648
Normal
0.2
132
Normal
0.2
546
Normal
0.2
952
Normal
0.2
314
Normal
0.2
426
Normal
0.2
478
Normal
0.2
878
Normal
0.2
421
Tumor
0.2
376
Normal
0.2
416
Normal
0.2
414
Normal
0.2
642
Normal
0.2
298
Normal
0.2
392
Normal
0.2
424
Normal
0.2
484
Normal
0.2
262
Normal
0.2
574
Normal
0.2
1015
Tumor
0.2
738
Normal
0.1
261
Tumor
0.1
124
Normal
0.1
868
Normal
0.1
415
Tumor
0.1
1031
Tumor
0.1
422
Normal
0.1
1032
Normal
0.1
461
Tumor
0.1
568
Normal
0.1
914
Normal
0.1
388
Normal
0.1
471
Tumor
0.1
332
Normal
0.1
524
Normal
0.1
516
Normal
0.1
528
Normal
0.1
328
Normal
0.1
146
Normal
0.1
628
Normal
0.1
474
Normal
0.1
864
Normal
0.1
976
Normal
0.1
866
Normal
0.1
232
Normal
0.1
111
Normal
0.1
664
Normal
0.1
258
Normal
0.1
364
Normal
0.1
468
Normal
0.1
558
Normal
0.0
494
Normal
0.0
958
Normal
0.0
394
Normal
0.0
517
Tumor
0.0
1044
Normal
0.0
462
Normal
0.0
937
Tumor
0.0
662
Normal
0.0
1026
Normal
0.0
482
Normal
0.0
272
Normal
0.0
446
Normal
0.0
456
Normal
0.0
327
Tumor
0.0
472
Normal
0.0
518
Normal
0.0
553
Tumor
0.0
922
Normal
0.0
824
Normal
0.0
396
Normal
0.0
145
Tumor
0.0
538
Normal
0.0
618
Normal
0.0
823
Tumor
0.0
138
Normal
0.0
464
Normal
0.0
1022
Normal
0.0
187
Tumor
0.0
666
Normal
0.0
488
Normal
0.0
412
Normal
0.0
148
Normal
0.0
196
Normal
0.0
573
Tumor
0.0
534
Normal
0.0
873
Tumor
0.0
368
Normal
0.0
968
Normal
0.0
212
Normal
0.0
353
Tumor
0.0
228
Normal
0.0
141
Tumor
-0.1
271
Tumor
-0.1
286
Normal
-0.1
444
Normal
-0.1
498
Normal
-0.1
172
Normal
-0.1
1043
Tumor
-0.1
737
Tumor
-0.1
113
Tumor
-0.1
451
Tumor
-0.1
136
Normal
-0.1
162
Normal
-0.1
224
Normal
-0.1
443
Tumor
-0.1
865
Tumor
-0.1
218
Normal
-0.1
284
Normal
-0.1
492
Normal
-0.1
362
Normal
-0.1
956
Normal
-0.1
778
Normal
-0.1
921
Tumor
-0.1
966
Normal
-0.1
641
Tumor
-0.1
191
Tumor
-0.1
126
Normal
-0.1
1042
Normal
-0.1
1028
Normal
-0.1
147
Tumor
-0.2
818
Normal
-0.2
114
Normal
-0.2
816
Normal
-0.2
366
Normal
-0.2
926
Normal
-0.2
723
Tumor
-0.2
142
Normal
-0.2
963
Tumor
-0.2
1025
Tumor
-0.2
491
Tumor
-0.2
672
Normal
-0.2
647
Tumor
-0.2
188
Normal
-0.2
161
Tumor
-0.2
214
Normal
-0.2
222
Normal
-0.2
185
Tumor
-0.2
278
Normal
-0.2
965
Tumor
-0.2
268
Normal
-0.2
386
Normal
-0.2
1014
Normal
-0.2
982
Normal
-0.2
523
Tumor
-0.2
213
Tumor
-0.2
425
Tumor
-0.2
384
Normal
-0.2
874
Normal
-0.2
297
Tumor
-0.3
536
Normal
-0.3
724
Normal
-0.3
951
Tumor
-0.3
343
Tumor
-0.3
514
Normal
-0.3
713
Tumor
-0.3
312
Normal
-0.3
1021
Tumor
-0.3
975
Tumor
-0.3
192
Normal
-0.3
341
Tumor
-0.3
616
Normal
-0.3
1016
Normal
-0.4
195
Tumor
-0.4
487
Tumor
-0.4
434
Normal
-0.4
227
Tumor
-0.4
463
Tumor
-0.4
125
Tumor
-0.4
497
Tumor
-0.4
455
Tumor
-0.4
527
Tumor
-0.4
445
Tumor
-0.4
918
Normal
-0.4
217
Tumor
-0.4
978
Normal
-0.4
852
Normal
-0.5
881
Tumor
-0.5
923
Tumor
-0.5
428
Normal
-0.5
537
Tumor
-0.5
567
Tumor
-0.5
967
Tumor
-0.5
545
Tumor
-0.5
983
Tumor
-0.5
221
Tumor
-0.5
351
Tumor
-0.5
391
Tumor
-0.5
383
Tumor
-0.5
984
Normal
-0.5
916
Normal
-0.6
617
Tumor
-0.6
375
Tumor
-0.6
363
Tumor
-0.6
387
Tumor
-0.6
447
Tumor
-0.6
131
Tumor
-0.6
467
Tumor
-0.6
663
Tumor
-0.6
943
Tumor
-0.7
671
Tumor
-0.7
427
Tumor
-0.7
135
Tumor
-0.7
817
Tumor
-0.7
851
Tumor
-0.7
535
Tumor
-0.7
877
Tumor
-0.7
313
Tumor
-0.8
413
Tumor
-0.8
755
Tumor
-0.8
277
Tumor
-0.9
815
Tumor
-0.9
367
Tumor
-0.9
697
Tumor
-1.0
223
Tumor
-1.0
743
Tumor
-1.1
395
Tumor
-1.1
311
Tumor
-1.1
285
Tumor
-1.2
661
Tumor
-1.2
814
Normal
-1.2
813
Tumor
-1.3
385
Tumor
-1.3
283
Tumor
-1.3
331
Tumor
-1.3
917
Tumor
-1.4
211
Tumor
-1.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
